mRNA_S-firma_F_contig10236.362.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10236.362.1
Unique NamemRNA_S-firma_F_contig10236.362.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10236.362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10236contigS-firma_F_contig10236:2877..3605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size730
Cds size729
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815553.2471652-CDS-S-firma_F_contig10236:2876..36051622815553.2471652-CDS-S-firma_F_contig10236:2876..3605Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10236 2877..3605 +
1696949411.2015047-CDS-S-firma_F_contig10236:2876..36051696949411.2015047-CDS-S-firma_F_contig10236:2876..3605Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10236 2877..3605 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10236.362.1prot_S-firma_F_contig10236.362.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10236 2877..3605 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10236.362.1

>prot_S-firma_F_contig10236.362.1 ID=prot_S-firma_F_contig10236.362.1|Name=mRNA_S-firma_F_contig10236.362.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=243bp
GKKDKQPFEVPGALLPAAAPRLRPSKVEPFQEYNEQTITAGCAGGQRDFD
VPGQQTPLDGSLHMDLLPNERILRQFDVNFRMQVSLLRKILWTVCMLCRS
CLSKPVFHRRRRIAITTQGRIGFFSSDLTGVQEGNCCCIKGGLRCDNAVN
IKWYHASELSALQFFVGQVHDVCPPWKIFCRDPYAVSLRLFFHKYPALSQ
MNAGGAGFVRFARTASPAKKFRAGVARNLFESLVGGARGLIAH
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mRNA from alignment at S-firma_F_contig10236:2877..3605+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10236.362.1 ID=mRNA_S-firma_F_contig10236.362.1|Name=mRNA_S-firma_F_contig10236.362.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=729bp|location=Sequence derived from alignment at S-firma_F_contig10236:2877..3605+ (Sphaerotrichia firma ET2_F female)
GGCAAGAAGGACAAGCAACCGTTCGAGGTCCCCGGCGCGCTGCTGCCGGC
GGCGGCGCCCCGCCTGCGCCCCTCCAAGGTGGAGCCCTTCCAGGAGTACA
ACGAGCAGACCATCACGGCGGGCTGCGCCGGCGGCCAGCGGGACTTTGAC
GTCCCTGGCCAGCAGACGCCCCTGGACGGCTCCCTCCACATGGACCTCCT
CCCCAATGAGCGCATCCTGCGCCAGTTCGACGTCAACTTCCGCATGCAGG
TCTCCCTCCTCCGCAAGATCCTGTGGACGGTGTGCATGCTGTGCCGCTCC
TGCCTGTCCAAGCCCGTCTTCCACCGCCGCCGCCGCATCGCCATCACCAC
CCAGGGCCGCATCGGCTTCTTCTCCTCCGACCTCACCGGCGTCCAGGAGG
GCAACTGCTGCTGCATCAAGGGCGGCCTCCGCTGCGACAACGCCGTCAAC
ATCAAGTGGTACCACGCCTCGGAGCTGTCCGCGCTGCAGTTCTTTGTCGG
CCAGGTGCACGACGTGTGCCCCCCGTGGAAGATTTTCTGCCGCGACCCGT
ACGCCGTCTCCCTCCGCCTCTTCTTCCACAAGTACCCCGCGCTGTCGCAG
ATGAACGCCGGCGGCGCCGGCTTTGTGCGCTTTGCCCGCACCGCCTCCCC
CGCCAAGAAGTTCCGGGCCGGCGTCGCCCGGAACCTGTTTGAGTCCCTCG
TCGGCGGCGCCCGCGGCTTGATCGCCCAC
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Coding sequence (CDS) from alignment at S-firma_F_contig10236:2877..3605+

>mRNA_S-firma_F_contig10236.362.1 ID=mRNA_S-firma_F_contig10236.362.1|Name=mRNA_S-firma_F_contig10236.362.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1458bp|location=Sequence derived from alignment at S-firma_F_contig10236:2877..3605+ (Sphaerotrichia firma ET2_F female)
GGCAAGAAGGACAAGCAACCGTTCGAGGTCCCCGGCGCGCTGCTGCCGGC
GGCGGCGCCCCGCCTGCGCCCCTCCAAGGTGGAGCCCTTCCAGGAGTACA
ACGAGCAGACCATCACGGCGGGCTGCGCCGGCGGCCAGCGGGACTTTGAC
GTCCCTGGCCAGCAGACGCCCCTGGACGGCTCCCTCCACATGGACCTCCT
CCCCAATGAGCGCATCCTGCGCCAGTTCGACGTCAACTTCCGCATGCAGG
TCTCCCTCCTCCGCAAGATCCTGTGGACGGTGTGCATGCTGTGCCGCTCC
TGCCTGTCCAAGCCCGTCTTCCACCGCCGCCGCCGCATCGCCATCACCAC
CCAGGGCCGCATCGGCTTCTTCTCCTCCGACCTCACCGGCGTCCAGGAGG
GCAACTGCTGCTGCATCAAGGGCGGCCTCCGCTGCGACAACGCCGTCAAC
ATCAAGTGGTACCACGCCTCGGAGCTGTCCGCGCTGCAGTTCTTTGTCGG
CCAGGTGCACGACGTGTGCCCCCCGTGGAAGATTTTCTGCCGCGACCCGT
ACGCCGTCTCCCTCCGCCTCTTCTTCCACAAGTACCCCGCGCTGTCGCAG
ATGAACGCCGGCGGCGCCGGCTTTGTGCGCTTTGCCCGCACCGCCTCCCC
CGCCAAGAAGTTCCGGGCCGGCGTCGCCCGGAACCTGTTTGAGTCCCTCG
TCGGCGGCGCCCGCGGCTTGATCGCCCACGGCAAGAAGGACAAGCAACCG
TTCGAGGTCCCCGGCGCGCTGCTGCCGGCGGCGGCGCCCCGCCTGCGCCC
CTCCAAGGTGGAGCCCTTCCAGGAGTACAACGAGCAGACCATCACGGCGG
GCTGCGCCGGCGGCCAGCGGGACTTTGACGTCCCTGGCCAGCAGACGCCC
CTGGACGGCTCCCTCCACATGGACCTCCTCCCCAATGAGCGCATCCTGCG
CCAGTTCGACGTCAACTTCCGCATGCAGGTCTCCCTCCTCCGCAAGATCC
TGTGGACGGTGTGCATGCTGTGCCGCTCCTGCCTGTCCAAGCCCGTCTTC
CACCGCCGCCGCCGCATCGCCATCACCACCCAGGGCCGCATCGGCTTCTT
CTCCTCCGACCTCACCGGCGTCCAGGAGGGCAACTGCTGCTGCATCAAGG
GCGGCCTCCGCTGCGACAACGCCGTCAACATCAAGTGGTACCACGCCTCG
GAGCTGTCCGCGCTGCAGTTCTTTGTCGGCCAGGTGCACGACGTGTGCCC
CCCGTGGAAGATTTTCTGCCGCGACCCGTACGCCGTCTCCCTCCGCCTCT
TCTTCCACAAGTACCCCGCGCTGTCGCAGATGAACGCCGGCGGCGCCGGC
TTTGTGCGCTTTGCCCGCACCGCCTCCCCCGCCAAGAAGTTCCGGGCCGG
CGTCGCCCGGAACCTGTTTGAGTCCCTCGTCGGCGGCGCCCGCGGCTTGA
TCGCCCAC
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