mRNA_S-firma_F_contig10231.358.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10231.358.1 vs. uniprot
Match: A0A6H5LDC1_9PHAE (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDC1_9PHAE) HSP 1 Score: 481 bits (1237), Expect = 7.120e-161 Identity = 241/275 (87.64%), Postives = 252/275 (91.64%), Query Frame = 1
Query: 1 QAMGIMTKEEWPVFMKTLKDPLPACFRIHSDCSFKDQVKKQLMELLEAPMVVEGREVKAVQELPWYPGALAYRLGCDRRFIRKQPHLAEFHKWLTSNMESGNITRQEAVSMLPPLFLDVHPKHLVLDMCAAPGSKTAQLMEMVSAPPPRAPDGXXXXXXAASGDNDDGEVGLVVANDSDRDRAYMLAHQCKRVKSPAICITWCPAQLLPNLGAAGAERGSDKGVFDRVLADVPCSGDGTLRKQPAIWRTWTVAGGLGLHPLQLLITLRGAAMLKV 825
QAMGIM KEEWP+FM TLK+PLPACFRIHSDCSFKDQVKKQL+ELLEAPMV++G+EVKAV+ELPWY G LAYRLGCDRRFIRKQPHLAEFHKWLT MESGNITRQEAVSMLPPLFLDV PKHLVLDMCAAPGSKTAQLMEM+SAP XXXXXX DG+VGLVVANDSDRDRAYMLAHQCKRV+SPAICITWC AQ LPNLGAAGAERGSDKGVFDRVLADVPCSGDGTLRKQPAIWRTWTVAGGLGLHPLQLLITLRGAAMLK+
Sbjct: 58 QAMGIMPKEEWPLFMNTLKEPLPACFRIHSDCSFKDQVKKQLLELLEAPMVIDGKEVKAVRELPWYAGGLAYRLGCDRRFIRKQPHLAEFHKWLTGLMESGNITRQEAVSMLPPLFLDVQPKHLVLDMCAAPGSKTAQLMEMISAPS-ATXXXXXXXXXXXXXXXXDGDVGLVVANDSDRDRAYMLAHQCKRVQSPAICITWCSAQSLPNLGAAGAERGSDKGVFDRVLADVPCSGDGTLRKQPAIWRTWTVAGGLGLHPLQLLITLRGAAMLKI 331
BLAST of mRNA_S-firma_F_contig10231.358.1 vs. uniprot
Match: D8LLJ3_ECTSI (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLJ3_ECTSI) HSP 1 Score: 300 bits (768), Expect = 3.190e-93 Identity = 159/178 (89.33%), Postives = 162/178 (91.01%), Query Frame = 1
Query: 292 MESGNITRQEAVSMLPPLFLDVHPKHLVLDMCAAPGSKTAQLMEMVSAPPPRAPDGXXXXXXAASGDNDDGEVGLVVANDSDRDRAYMLAHQCKRVKSPAICITWCPAQLLPNLGAAGAERGSDKGVFDRVLADVPCSGDGTLRKQPAIWRTWTVAGGLGLHPLQLLITLRGAAMLKV 825
MESGNITRQEAVSMLPPLFLDV PKHLVLDMCAAPGSKTAQLMEMVSAP + XXXXXX DGEVGLVVANDSDRDRAYMLAHQCKRV+SPAICITWC AQ LPNLGAAGAERGSDKGVFDRVLADVPCSGDGTLRKQPAIWRTWTVAGGLGLHPLQLLITLRGAAMLK+
Sbjct: 1 MESGNITRQEAVSMLPPLFLDVQPKHLVLDMCAAPGSKTAQLMEMVSAP---SXXXXXXXXXXXXXXXPDGEVGLVVANDSDRDRAYMLAHQCKRVQSPAICITWCSAQSLPNLGAAGAERGSDKGVFDRVLADVPCSGDGTLRKQPAIWRTWTVAGGLGLHPLQLLITLRGAAMLKI 175
BLAST of mRNA_S-firma_F_contig10231.358.1 vs. uniprot
Match: A0A835ZA58_9STRA (S-adenosyl-L-methionine-dependent methyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA58_9STRA) HSP 1 Score: 261 bits (668), Expect = 4.560e-83 Identity = 128/209 (61.24%), Postives = 153/209 (73.21%), Query Frame = 1
Query: 202 GALAYRLGCDRRFIRKQPHLAEFHKWLTSNMESGNITRQEAVSMLPPLFLDVHPKHLVLDMCAAPGSKTAQLMEMVSAPPPRAPDGXXXXXXAASGDNDDGEVGLVVANDSDRDRAYMLAHQCKRVKSPAICITWCPAQLLPNLGAAGAERGS-DKGVFDRVLADVPCSGDGTLRKQPAIWRTWTVAGGLGLHPLQLLITLRGAAMLKV 825
G LAY+LG DRR IRK P L H+WL ++ ESG ITRQE VSM+PPLFLDVHP H++LDMCAAPGSKTAQL+EMV+AP A++ + GLV+AND++RDRAY+LAHQC+R +P +C+TWC AQL P LG +G+ DKG+FDRVLADVPCSGDGT RK P IWR W+ G L LHPLQL I RGAA+LKV
Sbjct: 20 GELAYKLGADRRQIRKTPQLKALHEWLLAHTESGAITRQEEVSMVPPLFLDVHPGHIILDMCAAPGSKTAQLLEMVTAP-------------ASTSTAGESPEGLVIANDANRDRAYLLAHQCRRTAAPCLCVTWCAAQLFPTLGPDAGGKGTVDKGIFDRVLADVPCSGDGTARKAPNIWRMWSTHGPLTLHPLQLSIAARGAALLKV 215
BLAST of mRNA_S-firma_F_contig10231.358.1 vs. uniprot
Match: H3HAP2_PHYRM (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HAP2_PHYRM) HSP 1 Score: 253 bits (645), Expect = 1.470e-75 Identity = 132/276 (47.83%), Postives = 170/276 (61.59%), Query Frame = 1
Query: 1 QAMGIMTKEEWPVFMKTLKDPLPACFRIHSDCSFKDQVKKQLMELLEAP-MVVEGREVKAVQELPWYPGALAYRLGCDRRFIRKQPHLAEFHKWLTSNMESGNITRQEAVSMLPPLFLDVHPKHLVLDMCAAPGSKTAQLMEMVSAPPPRAPDGXXXXXXAASGDNDDGEVGLVVANDSDRDRAYMLAHQCKRVKSPAICITWCPAQLLPNLGAAGAERGSDKGVFDRVLADVPCSGDGTLRKQPAIWRTWTVAGGLGLHPLQLLITLRGAAMLKV 825
+A I+ +W F K L PLP FRI+S C F D++++ + + + +VV+ V+ + +PWYP + + +RR +RK P L EF WL SG+ITRQEAVSM+PPL L V P H VLDMCAAPGSKT+QL+E + + A+G G+VVAND D RAYML HQ KR+ SPA+ +T AQ +P LG G E+ +GVFDRVL D PCSGDGTLRK P IW+ W+ G+ LHPLQL I RGAA+LKV
Sbjct: 47 KAQNIVPDADWDAFKKALATPLPTTFRINSSCPFADRIREHIEQDFKFDGLVVDDEPVEPISPMPWYPDSRGFTWSVERRRVRKLPILKEFQSWLVELSNSGSITRQEAVSMIPPLVLGVEPHHKVLDMCAAPGSKTSQLLESLHS------------QEFATGKT---PTGVVVANDVDLKRAYMLVHQSKRISSPALLVTCHEAQNIPFLGKDGTEK---EGVFDRVLCDAPCSGDGTLRKNPLIWKNWSAKNGIALHPLQLQIAKRGAALLKV 304
BLAST of mRNA_S-firma_F_contig10231.358.1 vs. uniprot
Match: G4ZPP8_PHYSP (SAM_MT_RSMB_NOP domain-containing protein (Fragment) n=3 Tax=Phytophthora TaxID=4783 RepID=G4ZPP8_PHYSP) HSP 1 Score: 249 bits (635), Expect = 7.210e-75 Identity = 132/278 (47.48%), Postives = 168/278 (60.43%), Query Frame = 1
Query: 1 QAMGIMTKEEWPVFMKTLKDPLPACFRIHSDCSFKDQVKKQLMELLEAP-MVVEGREVKAVQELPWYPGALAYRLGCDRRFIRKQPHLAEFHKWLTSNMESGNITRQEAVSMLPPLFLDVHPKHLVLDMCAAPGSKTAQLMEMVSAPPPRAPDGXXXXXXAASGDNDDGEV--GLVVANDSDRDRAYMLAHQCKRVKSPAICITWCPAQLLPNLGAAGAERGSDKGVFDRVLADVPCSGDGTLRKQPAIWRTWTVAGGLGLHPLQLLITLRGAAMLKV 825
+A IM +W F K L PLP FRI+S C F D++++ + + + +VV+ V+ + +PWYP + +RR +RK P L EF WL SG+ITRQEAVSM+PPL L V H VLDMCAAPGSKT+QL+E + S + + G+ G+VVAND D RAYML HQ KR+ SPA+ +T AQ +P LG G ER GVFDR+L D PCSGDGTLRK P IW+ W+ G+ LHPLQL I RGAA+LKV
Sbjct: 51 KAQNIMADADWAAFKKALATPLPTTFRINSSCPFADRIREHIEQDFKFDGLVVDDEPVEPISPMPWYPDNRGFTWSVERRRVRKLPILKEFQSWLVELSNSGSITRQEAVSMIPPLVLGVESHHKVLDMCAAPGSKTSQLLESLH-----------------SKEFETGKTPTGVVVANDVDLKRAYMLVHQSKRISSPALLVTCHEAQNIPFLGEDGTER---DGVFDRILCDAPCSGDGTLRKNPLIWKNWSAKNGIALHPLQLQIAKRGAALLKV 308
BLAST of mRNA_S-firma_F_contig10231.358.1 vs. uniprot
Match: A0A484DRY9_BRELC (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DRY9_BRELC) HSP 1 Score: 251 bits (640), Expect = 1.060e-74 Identity = 133/276 (48.19%), Postives = 169/276 (61.23%), Query Frame = 1
Query: 1 QAMGIMTKEEWPVFMKTLKDPLPACFRIHSDCSFKDQVKKQL-MELLEAPMVVEGREVKAVQELPWYPGALAYRLGCDRRFIRKQPHLAEFHKWLTSNMESGNITRQEAVSMLPPLFLDVHPKHLVLDMCAAPGSKTAQLMEMVSAPPPRAPDGXXXXXXAASGDNDDGEVGLVVANDSDRDRAYMLAHQCKRVKSPAICITWCPAQLLPNLGAAGAERGSDKGVFDRVLADVPCSGDGTLRKQPAIWRTWTVAGGLGLHPLQLLITLRGAAMLKV 825
+A IM+ +WP F K L PLP FRI+S C F +++++ + + +V+E V+ ++ + WYP + +RR +RK P L EF WL SG+ITRQEAVSM+PPL L V H VLDMCAAPGSKT+QL+E + + A+G GLVVAND D RAYML HQ KR+ SPA+ +T AQ LP LG G E GVFDR+L DVPCSGDGTLRK P IW++W+ G+ LHPLQL I RGAA+LKV
Sbjct: 48 KAQNIMSDSDWPAFKKALATPLPTTFRINSSCLFAERIREHIDQDFKFDTLVLENEPVEPIRAMSWYPDNRGFTWSVERRRVRKLPILKEFQTWLVGLSTSGSITRQEAVSMIPPLVLGVKSHHKVLDMCAAPGSKTSQLLESLHS------------QELATGQT---PTGLVVANDVDLKRAYMLVHQSKRISSPALVVTCHEAQNLPFLGQEGTEH---DGVFDRILCDVPCSGDGTLRKNPLIWKSWSAKNGIVLHPLQLQIAKRGAALLKV 305
BLAST of mRNA_S-firma_F_contig10231.358.1 vs. uniprot
Match: A0A662X353_9STRA (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X353_9STRA) HSP 1 Score: 251 bits (641), Expect = 1.300e-74 Identity = 137/284 (48.24%), Postives = 168/284 (59.15%), Query Frame = 1
Query: 1 QAMGIMTKEEWPVFMKTLKDPLPACFRIHSDCSFKDQVKKQLMELLEA---------PMVVEGREVKAVQELPWYPGALAYRLGCDRRFIRKQPHLAEFHKWLTSNMESGNITRQEAVSMLPPLFLDVHPKHLVLDMCAAPGSKTAQLMEMVSAPPPRAPDGXXXXXXAASGDNDDGEVGLVVANDSDRDRAYMLAHQCKRVKSPAICITWCPAQLLPNLGAAGAERGSDKGVFDRVLADVPCSGDGTLRKQPAIWRTWTVAGGLGLHPLQLLITLRGAAMLKV 825
+A IMT +W F K L PLP FRI+S C F D+ + L+ L +VV+ V+ + +PWYP + +RR +RK P L EF WL SG+ITRQEAVSM+PPL L V P H VLDMCAAPGSKT+QL+E + + ASG G+VVAND D RAYML HQ KR+ SPA+ +T AQ +P LG G ER +GVFDR+L D PCSGDGTLRK P IW+ W+ G+ LHPLQL I RGAA+LKV
Sbjct: 52 KAQDIMTDADWEPFKKALATPLPTTFRINSSCPFADRYETLLILLFSLFVMMDFKFDGLVVDEEPVEPISSMPWYPDNRGFTWSVERRRVRKLPILKEFQTWLVELSNSGSITRQEAVSMIPPLVLGVEPHHKVLDMCAAPGSKTSQLLESLHS------------QERASGKT---PTGVVVANDVDLKRAYMLVHQSKRISSPALLVTCHEAQNIPFLGDDGTER---EGVFDRILCDAPCSGDGTLRKNPLIWKHWSAKNGIALHPLQLQIAKRGAALLKV 317
BLAST of mRNA_S-firma_F_contig10231.358.1 vs. uniprot
Match: A0A8K1C4V8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C4V8_PYTOL) HSP 1 Score: 250 bits (638), Expect = 2.950e-74 Identity = 132/276 (47.83%), Postives = 170/276 (61.59%), Query Frame = 1
Query: 1 QAMGIMTKEEWPVFMKTLKDPLPACFRIHSDCSFKDQVKKQLMELLEAP-MVVEGREVKAVQELPWYPGALAYRLGCDRRFIRKQPHLAEFHKWLTSNMESGNITRQEAVSMLPPLFLDVHPKHLVLDMCAAPGSKTAQLMEMVSAPPPRAPDGXXXXXXAASGDNDDGEVGLVVANDSDRDRAYMLAHQCKRVKSPAICITWCPAQLLPNLGAAGAERGSDKGVFDRVLADVPCSGDGTLRKQPAIWRTWTVAGGLGLHPLQLLITLRGAAMLKV 825
QA ++ EEW FM L PLP FRI++ C+F D++++++ + +VV+ V + E+PWYP ++ +RR IRK P L EF KWL +SG+ITRQEAVSM+PPL L V P H VLDMCAAPGSKT+QL+E + A P +G+ G+V+AND D RAYML HQ KR+ SPA+ +T AQ +P LG E G FDR+L D PCSGDGTLRK P IW+ W GL LHPLQ+ I RGA++LKV
Sbjct: 52 QAQEVVAPEEWESFMAYLAKPLPTTFRINNSCAFADRIRERIATDFKFDGLVVDHEAVDPISEMPWYPNNKGFQWSVERRRIRKLPILNEFQKWLIELSDSGSITRQEAVSMIPPLVLGVEPHHKVLDMCAAPGSKTSQLLESLHAQEP------------ITGET---PTGMVMANDVDLKRAYMLVHQSKRMGSPALLVTCHEAQHIPYLGG---EEEKQNGFFDRILCDAPCSGDGTLRKNPIIWKQWDAKNGLSLHPLQVEIAKRGASLLKV 309
BLAST of mRNA_S-firma_F_contig10231.358.1 vs. uniprot
Match: W2QK78_PHYPN (SAM_MT_RSMB_NOP domain-containing protein n=15 Tax=Phytophthora TaxID=4783 RepID=W2QK78_PHYPN) HSP 1 Score: 247 bits (631), Expect = 4.810e-74 Identity = 130/276 (47.10%), Postives = 167/276 (60.51%), Query Frame = 1
Query: 1 QAMGIMTKEEWPVFMKTLKDPLPACFRIHSDCSFKDQVKKQLMELLEAP-MVVEGREVKAVQELPWYPGALAYRLGCDRRFIRKQPHLAEFHKWLTSNMESGNITRQEAVSMLPPLFLDVHPKHLVLDMCAAPGSKTAQLMEMVSAPPPRAPDGXXXXXXAASGDNDDGEVGLVVANDSDRDRAYMLAHQCKRVKSPAICITWCPAQLLPNLGAAGAERGSDKGVFDRVLADVPCSGDGTLRKQPAIWRTWTVAGGLGLHPLQLLITLRGAAMLKV 825
+A I+ +W F K L PLP FRI+S C F D++++ + + + +VV+ V+ + +PWYP + +RR +RK P L EF WL SG+ITRQEAVSM+PPL L V P H VLDMCAAPGSKT+QL+E + + A+G G+VVAND D RAYML HQ KR+ SPA+ +T AQ +P LG G E +GVFDR+L D PCSGDGTLRK P IW+ W+ G+ LHPLQL I RGA +LKV
Sbjct: 53 KAQNIVADADWDAFKKALGTPLPTTFRINSSCPFADRIREHIEQDFKFDGLVVDDEPVEPISCMPWYPDNRGFTWSVERRRVRKLPILKEFQSWLVELSNSGSITRQEAVSMIPPLVLGVEPYHKVLDMCAAPGSKTSQLLESLHS------------QELATGKT---PTGVVVANDVDLKRAYMLVHQSKRINSPALLVTCHEAQNIPFLGKDGTES---EGVFDRILCDAPCSGDGTLRKNPLIWKNWSAKNGIALHPLQLQIAKRGATLLKV 310
BLAST of mRNA_S-firma_F_contig10231.358.1 vs. uniprot
Match: A0A421F623_9STRA (SAM_MT_RSMB_NOP domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421F623_9STRA) HSP 1 Score: 248 bits (634), Expect = 1.250e-73 Identity = 132/276 (47.83%), Postives = 170/276 (61.59%), Query Frame = 1
Query: 1 QAMGIMTKEEWPVFMKTLKDPLPACFRIHSDCSFKDQVKKQLMELLEAP-MVVEGREVKAVQELPWYPGALAYRLGCDRRFIRKQPHLAEFHKWLTSNMESGNITRQEAVSMLPPLFLDVHPKHLVLDMCAAPGSKTAQLMEMVSAPPPRAPDGXXXXXXAASGDNDDGEVGLVVANDSDRDRAYMLAHQCKRVKSPAICITWCPAQLLPNLGAAGAERGSDKGVFDRVLADVPCSGDGTLRKQPAIWRTWTVAGGLGLHPLQLLITLRGAAMLKV 825
+A GI+ + +W F K L PLP FRI+S C F D++++ + + + +VV+ V+ + + WYP + +RR +RK P L F WL SG+ITRQEAVSM+PPL L V P H VLDMCAAPGSKT+QL+E + + A+G+ G+VVAND D RAYML HQ KR+ SPA+ +T AQ +P LG G E SD GVFDR+L D PCSGDGTLRK P IW+ W+ G+ LHPLQL I RGAA+LKV
Sbjct: 53 KAQGIVPEADWEAFKKALATPLPTTFRINSSCPFADRIREHIEQDFKFDGLVVDDEPVEPISNMQWYPDNRGFTWSVERRRVRKLPILKAFQTWLVELSNSGSITRQEAVSMIPPLVLGVEPHHKVLDMCAAPGSKTSQLLESLHS------------QELATGNT---PTGVVVANDVDLKRAYMLVHQSKRISSPALLVTCHEAQNIPFLGEEGTE--SD-GVFDRILCDAPCSGDGTLRKNPLIWKNWSAKNGIALHPLQLQIAKRGAALLKV 310 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10231.358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10231.358.1 >prot_S-firma_F_contig10231.358.1 ID=prot_S-firma_F_contig10231.358.1|Name=mRNA_S-firma_F_contig10231.358.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=273bp MGIMTKEEWPVFMKTLKDPLPACFRIHSDCSFKDQVKKQLMELLEAPMVVback to top mRNA from alignment at S-firma_F_contig10231:30..4987- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10231.358.1 ID=mRNA_S-firma_F_contig10231.358.1|Name=mRNA_S-firma_F_contig10231.358.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=4958bp|location=Sequence derived from alignment at S-firma_F_contig10231:30..4987- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10231:30..4987- >mRNA_S-firma_F_contig10231.358.1 ID=mRNA_S-firma_F_contig10231.358.1|Name=mRNA_S-firma_F_contig10231.358.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1638bp|location=Sequence derived from alignment at S-firma_F_contig10231:30..4987- (Sphaerotrichia firma ET2_F female)back to top |