mRNA_S-firma_F_contig10231.358.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10231.358.1
Unique NamemRNA_S-firma_F_contig10231.358.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10231.358.1 vs. uniprot
Match: A0A6H5LDC1_9PHAE (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDC1_9PHAE)

HSP 1 Score: 481 bits (1237), Expect = 7.120e-161
Identity = 241/275 (87.64%), Postives = 252/275 (91.64%), Query Frame = 1
Query:    1 QAMGIMTKEEWPVFMKTLKDPLPACFRIHSDCSFKDQVKKQLMELLEAPMVVEGREVKAVQELPWYPGALAYRLGCDRRFIRKQPHLAEFHKWLTSNMESGNITRQEAVSMLPPLFLDVHPKHLVLDMCAAPGSKTAQLMEMVSAPPPRAPDGXXXXXXAASGDNDDGEVGLVVANDSDRDRAYMLAHQCKRVKSPAICITWCPAQLLPNLGAAGAERGSDKGVFDRVLADVPCSGDGTLRKQPAIWRTWTVAGGLGLHPLQLLITLRGAAMLKV 825
            QAMGIM KEEWP+FM TLK+PLPACFRIHSDCSFKDQVKKQL+ELLEAPMV++G+EVKAV+ELPWY G LAYRLGCDRRFIRKQPHLAEFHKWLT  MESGNITRQEAVSMLPPLFLDV PKHLVLDMCAAPGSKTAQLMEM+SAP       XXXXXX       DG+VGLVVANDSDRDRAYMLAHQCKRV+SPAICITWC AQ LPNLGAAGAERGSDKGVFDRVLADVPCSGDGTLRKQPAIWRTWTVAGGLGLHPLQLLITLRGAAMLK+
Sbjct:   58 QAMGIMPKEEWPLFMNTLKEPLPACFRIHSDCSFKDQVKKQLLELLEAPMVIDGKEVKAVRELPWYAGGLAYRLGCDRRFIRKQPHLAEFHKWLTGLMESGNITRQEAVSMLPPLFLDVQPKHLVLDMCAAPGSKTAQLMEMISAPS-ATXXXXXXXXXXXXXXXXDGDVGLVVANDSDRDRAYMLAHQCKRVQSPAICITWCSAQSLPNLGAAGAERGSDKGVFDRVLADVPCSGDGTLRKQPAIWRTWTVAGGLGLHPLQLLITLRGAAMLKI 331          
BLAST of mRNA_S-firma_F_contig10231.358.1 vs. uniprot
Match: D8LLJ3_ECTSI (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLJ3_ECTSI)

HSP 1 Score: 300 bits (768), Expect = 3.190e-93
Identity = 159/178 (89.33%), Postives = 162/178 (91.01%), Query Frame = 1
Query:  292 MESGNITRQEAVSMLPPLFLDVHPKHLVLDMCAAPGSKTAQLMEMVSAPPPRAPDGXXXXXXAASGDNDDGEVGLVVANDSDRDRAYMLAHQCKRVKSPAICITWCPAQLLPNLGAAGAERGSDKGVFDRVLADVPCSGDGTLRKQPAIWRTWTVAGGLGLHPLQLLITLRGAAMLKV 825
            MESGNITRQEAVSMLPPLFLDV PKHLVLDMCAAPGSKTAQLMEMVSAP   +   XXXXXX       DGEVGLVVANDSDRDRAYMLAHQCKRV+SPAICITWC AQ LPNLGAAGAERGSDKGVFDRVLADVPCSGDGTLRKQPAIWRTWTVAGGLGLHPLQLLITLRGAAMLK+
Sbjct:    1 MESGNITRQEAVSMLPPLFLDVQPKHLVLDMCAAPGSKTAQLMEMVSAP---SXXXXXXXXXXXXXXXPDGEVGLVVANDSDRDRAYMLAHQCKRVQSPAICITWCSAQSLPNLGAAGAERGSDKGVFDRVLADVPCSGDGTLRKQPAIWRTWTVAGGLGLHPLQLLITLRGAAMLKI 175          
BLAST of mRNA_S-firma_F_contig10231.358.1 vs. uniprot
Match: A0A835ZA58_9STRA (S-adenosyl-L-methionine-dependent methyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA58_9STRA)

HSP 1 Score: 261 bits (668), Expect = 4.560e-83
Identity = 128/209 (61.24%), Postives = 153/209 (73.21%), Query Frame = 1
Query:  202 GALAYRLGCDRRFIRKQPHLAEFHKWLTSNMESGNITRQEAVSMLPPLFLDVHPKHLVLDMCAAPGSKTAQLMEMVSAPPPRAPDGXXXXXXAASGDNDDGEVGLVVANDSDRDRAYMLAHQCKRVKSPAICITWCPAQLLPNLGAAGAERGS-DKGVFDRVLADVPCSGDGTLRKQPAIWRTWTVAGGLGLHPLQLLITLRGAAMLKV 825
            G LAY+LG DRR IRK P L   H+WL ++ ESG ITRQE VSM+PPLFLDVHP H++LDMCAAPGSKTAQL+EMV+AP             A++    +   GLV+AND++RDRAY+LAHQC+R  +P +C+TWC AQL P LG     +G+ DKG+FDRVLADVPCSGDGT RK P IWR W+  G L LHPLQL I  RGAA+LKV
Sbjct:   20 GELAYKLGADRRQIRKTPQLKALHEWLLAHTESGAITRQEEVSMVPPLFLDVHPGHIILDMCAAPGSKTAQLLEMVTAP-------------ASTSTAGESPEGLVIANDANRDRAYLLAHQCRRTAAPCLCVTWCAAQLFPTLGPDAGGKGTVDKGIFDRVLADVPCSGDGTARKAPNIWRMWSTHGPLTLHPLQLSIAARGAALLKV 215          
BLAST of mRNA_S-firma_F_contig10231.358.1 vs. uniprot
Match: H3HAP2_PHYRM (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HAP2_PHYRM)

HSP 1 Score: 253 bits (645), Expect = 1.470e-75
Identity = 132/276 (47.83%), Postives = 170/276 (61.59%), Query Frame = 1
Query:    1 QAMGIMTKEEWPVFMKTLKDPLPACFRIHSDCSFKDQVKKQLMELLEAP-MVVEGREVKAVQELPWYPGALAYRLGCDRRFIRKQPHLAEFHKWLTSNMESGNITRQEAVSMLPPLFLDVHPKHLVLDMCAAPGSKTAQLMEMVSAPPPRAPDGXXXXXXAASGDNDDGEVGLVVANDSDRDRAYMLAHQCKRVKSPAICITWCPAQLLPNLGAAGAERGSDKGVFDRVLADVPCSGDGTLRKQPAIWRTWTVAGGLGLHPLQLLITLRGAAMLKV 825
            +A  I+   +W  F K L  PLP  FRI+S C F D++++ + +  +   +VV+   V+ +  +PWYP +  +    +RR +RK P L EF  WL     SG+ITRQEAVSM+PPL L V P H VLDMCAAPGSKT+QL+E + +               A+G       G+VVAND D  RAYML HQ KR+ SPA+ +T   AQ +P LG  G E+   +GVFDRVL D PCSGDGTLRK P IW+ W+   G+ LHPLQL I  RGAA+LKV
Sbjct:   47 KAQNIVPDADWDAFKKALATPLPTTFRINSSCPFADRIREHIEQDFKFDGLVVDDEPVEPISPMPWYPDSRGFTWSVERRRVRKLPILKEFQSWLVELSNSGSITRQEAVSMIPPLVLGVEPHHKVLDMCAAPGSKTSQLLESLHS------------QEFATGKT---PTGVVVANDVDLKRAYMLVHQSKRISSPALLVTCHEAQNIPFLGKDGTEK---EGVFDRVLCDAPCSGDGTLRKNPLIWKNWSAKNGIALHPLQLQIAKRGAALLKV 304          
BLAST of mRNA_S-firma_F_contig10231.358.1 vs. uniprot
Match: G4ZPP8_PHYSP (SAM_MT_RSMB_NOP domain-containing protein (Fragment) n=3 Tax=Phytophthora TaxID=4783 RepID=G4ZPP8_PHYSP)

HSP 1 Score: 249 bits (635), Expect = 7.210e-75
Identity = 132/278 (47.48%), Postives = 168/278 (60.43%), Query Frame = 1
Query:    1 QAMGIMTKEEWPVFMKTLKDPLPACFRIHSDCSFKDQVKKQLMELLEAP-MVVEGREVKAVQELPWYPGALAYRLGCDRRFIRKQPHLAEFHKWLTSNMESGNITRQEAVSMLPPLFLDVHPKHLVLDMCAAPGSKTAQLMEMVSAPPPRAPDGXXXXXXAASGDNDDGEV--GLVVANDSDRDRAYMLAHQCKRVKSPAICITWCPAQLLPNLGAAGAERGSDKGVFDRVLADVPCSGDGTLRKQPAIWRTWTVAGGLGLHPLQLLITLRGAAMLKV 825
            +A  IM   +W  F K L  PLP  FRI+S C F D++++ + +  +   +VV+   V+ +  +PWYP    +    +RR +RK P L EF  WL     SG+ITRQEAVSM+PPL L V   H VLDMCAAPGSKT+QL+E +                  S + + G+   G+VVAND D  RAYML HQ KR+ SPA+ +T   AQ +P LG  G ER    GVFDR+L D PCSGDGTLRK P IW+ W+   G+ LHPLQL I  RGAA+LKV
Sbjct:   51 KAQNIMADADWAAFKKALATPLPTTFRINSSCPFADRIREHIEQDFKFDGLVVDDEPVEPISPMPWYPDNRGFTWSVERRRVRKLPILKEFQSWLVELSNSGSITRQEAVSMIPPLVLGVESHHKVLDMCAAPGSKTSQLLESLH-----------------SKEFETGKTPTGVVVANDVDLKRAYMLVHQSKRISSPALLVTCHEAQNIPFLGEDGTER---DGVFDRILCDAPCSGDGTLRKNPLIWKNWSAKNGIALHPLQLQIAKRGAALLKV 308          
BLAST of mRNA_S-firma_F_contig10231.358.1 vs. uniprot
Match: A0A484DRY9_BRELC (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DRY9_BRELC)

HSP 1 Score: 251 bits (640), Expect = 1.060e-74
Identity = 133/276 (48.19%), Postives = 169/276 (61.23%), Query Frame = 1
Query:    1 QAMGIMTKEEWPVFMKTLKDPLPACFRIHSDCSFKDQVKKQL-MELLEAPMVVEGREVKAVQELPWYPGALAYRLGCDRRFIRKQPHLAEFHKWLTSNMESGNITRQEAVSMLPPLFLDVHPKHLVLDMCAAPGSKTAQLMEMVSAPPPRAPDGXXXXXXAASGDNDDGEVGLVVANDSDRDRAYMLAHQCKRVKSPAICITWCPAQLLPNLGAAGAERGSDKGVFDRVLADVPCSGDGTLRKQPAIWRTWTVAGGLGLHPLQLLITLRGAAMLKV 825
            +A  IM+  +WP F K L  PLP  FRI+S C F +++++ +  +     +V+E   V+ ++ + WYP    +    +RR +RK P L EF  WL     SG+ITRQEAVSM+PPL L V   H VLDMCAAPGSKT+QL+E + +               A+G       GLVVAND D  RAYML HQ KR+ SPA+ +T   AQ LP LG  G E     GVFDR+L DVPCSGDGTLRK P IW++W+   G+ LHPLQL I  RGAA+LKV
Sbjct:   48 KAQNIMSDSDWPAFKKALATPLPTTFRINSSCLFAERIREHIDQDFKFDTLVLENEPVEPIRAMSWYPDNRGFTWSVERRRVRKLPILKEFQTWLVGLSTSGSITRQEAVSMIPPLVLGVKSHHKVLDMCAAPGSKTSQLLESLHS------------QELATGQT---PTGLVVANDVDLKRAYMLVHQSKRISSPALVVTCHEAQNLPFLGQEGTEH---DGVFDRILCDVPCSGDGTLRKNPLIWKSWSAKNGIVLHPLQLQIAKRGAALLKV 305          
BLAST of mRNA_S-firma_F_contig10231.358.1 vs. uniprot
Match: A0A662X353_9STRA (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X353_9STRA)

HSP 1 Score: 251 bits (641), Expect = 1.300e-74
Identity = 137/284 (48.24%), Postives = 168/284 (59.15%), Query Frame = 1
Query:    1 QAMGIMTKEEWPVFMKTLKDPLPACFRIHSDCSFKDQVKKQLMELLEA---------PMVVEGREVKAVQELPWYPGALAYRLGCDRRFIRKQPHLAEFHKWLTSNMESGNITRQEAVSMLPPLFLDVHPKHLVLDMCAAPGSKTAQLMEMVSAPPPRAPDGXXXXXXAASGDNDDGEVGLVVANDSDRDRAYMLAHQCKRVKSPAICITWCPAQLLPNLGAAGAERGSDKGVFDRVLADVPCSGDGTLRKQPAIWRTWTVAGGLGLHPLQLLITLRGAAMLKV 825
            +A  IMT  +W  F K L  PLP  FRI+S C F D+ +  L+ L             +VV+   V+ +  +PWYP    +    +RR +RK P L EF  WL     SG+ITRQEAVSM+PPL L V P H VLDMCAAPGSKT+QL+E + +               ASG       G+VVAND D  RAYML HQ KR+ SPA+ +T   AQ +P LG  G ER   +GVFDR+L D PCSGDGTLRK P IW+ W+   G+ LHPLQL I  RGAA+LKV
Sbjct:   52 KAQDIMTDADWEPFKKALATPLPTTFRINSSCPFADRYETLLILLFSLFVMMDFKFDGLVVDEEPVEPISSMPWYPDNRGFTWSVERRRVRKLPILKEFQTWLVELSNSGSITRQEAVSMIPPLVLGVEPHHKVLDMCAAPGSKTSQLLESLHS------------QERASGKT---PTGVVVANDVDLKRAYMLVHQSKRISSPALLVTCHEAQNIPFLGDDGTER---EGVFDRILCDAPCSGDGTLRKNPLIWKHWSAKNGIALHPLQLQIAKRGAALLKV 317          
BLAST of mRNA_S-firma_F_contig10231.358.1 vs. uniprot
Match: A0A8K1C4V8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C4V8_PYTOL)

HSP 1 Score: 250 bits (638), Expect = 2.950e-74
Identity = 132/276 (47.83%), Postives = 170/276 (61.59%), Query Frame = 1
Query:    1 QAMGIMTKEEWPVFMKTLKDPLPACFRIHSDCSFKDQVKKQLMELLEAP-MVVEGREVKAVQELPWYPGALAYRLGCDRRFIRKQPHLAEFHKWLTSNMESGNITRQEAVSMLPPLFLDVHPKHLVLDMCAAPGSKTAQLMEMVSAPPPRAPDGXXXXXXAASGDNDDGEVGLVVANDSDRDRAYMLAHQCKRVKSPAICITWCPAQLLPNLGAAGAERGSDKGVFDRVLADVPCSGDGTLRKQPAIWRTWTVAGGLGLHPLQLLITLRGAAMLKV 825
            QA  ++  EEW  FM  L  PLP  FRI++ C+F D++++++    +   +VV+   V  + E+PWYP    ++   +RR IRK P L EF KWL    +SG+ITRQEAVSM+PPL L V P H VLDMCAAPGSKT+QL+E + A  P             +G+      G+V+AND D  RAYML HQ KR+ SPA+ +T   AQ +P LG    E     G FDR+L D PCSGDGTLRK P IW+ W    GL LHPLQ+ I  RGA++LKV
Sbjct:   52 QAQEVVAPEEWESFMAYLAKPLPTTFRINNSCAFADRIRERIATDFKFDGLVVDHEAVDPISEMPWYPNNKGFQWSVERRRIRKLPILNEFQKWLIELSDSGSITRQEAVSMIPPLVLGVEPHHKVLDMCAAPGSKTSQLLESLHAQEP------------ITGET---PTGMVMANDVDLKRAYMLVHQSKRMGSPALLVTCHEAQHIPYLGG---EEEKQNGFFDRILCDAPCSGDGTLRKNPIIWKQWDAKNGLSLHPLQVEIAKRGASLLKV 309          
BLAST of mRNA_S-firma_F_contig10231.358.1 vs. uniprot
Match: W2QK78_PHYPN (SAM_MT_RSMB_NOP domain-containing protein n=15 Tax=Phytophthora TaxID=4783 RepID=W2QK78_PHYPN)

HSP 1 Score: 247 bits (631), Expect = 4.810e-74
Identity = 130/276 (47.10%), Postives = 167/276 (60.51%), Query Frame = 1
Query:    1 QAMGIMTKEEWPVFMKTLKDPLPACFRIHSDCSFKDQVKKQLMELLEAP-MVVEGREVKAVQELPWYPGALAYRLGCDRRFIRKQPHLAEFHKWLTSNMESGNITRQEAVSMLPPLFLDVHPKHLVLDMCAAPGSKTAQLMEMVSAPPPRAPDGXXXXXXAASGDNDDGEVGLVVANDSDRDRAYMLAHQCKRVKSPAICITWCPAQLLPNLGAAGAERGSDKGVFDRVLADVPCSGDGTLRKQPAIWRTWTVAGGLGLHPLQLLITLRGAAMLKV 825
            +A  I+   +W  F K L  PLP  FRI+S C F D++++ + +  +   +VV+   V+ +  +PWYP    +    +RR +RK P L EF  WL     SG+ITRQEAVSM+PPL L V P H VLDMCAAPGSKT+QL+E + +               A+G       G+VVAND D  RAYML HQ KR+ SPA+ +T   AQ +P LG  G E    +GVFDR+L D PCSGDGTLRK P IW+ W+   G+ LHPLQL I  RGA +LKV
Sbjct:   53 KAQNIVADADWDAFKKALGTPLPTTFRINSSCPFADRIREHIEQDFKFDGLVVDDEPVEPISCMPWYPDNRGFTWSVERRRVRKLPILKEFQSWLVELSNSGSITRQEAVSMIPPLVLGVEPYHKVLDMCAAPGSKTSQLLESLHS------------QELATGKT---PTGVVVANDVDLKRAYMLVHQSKRINSPALLVTCHEAQNIPFLGKDGTES---EGVFDRILCDAPCSGDGTLRKNPLIWKNWSAKNGIALHPLQLQIAKRGATLLKV 310          
BLAST of mRNA_S-firma_F_contig10231.358.1 vs. uniprot
Match: A0A421F623_9STRA (SAM_MT_RSMB_NOP domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421F623_9STRA)

HSP 1 Score: 248 bits (634), Expect = 1.250e-73
Identity = 132/276 (47.83%), Postives = 170/276 (61.59%), Query Frame = 1
Query:    1 QAMGIMTKEEWPVFMKTLKDPLPACFRIHSDCSFKDQVKKQLMELLEAP-MVVEGREVKAVQELPWYPGALAYRLGCDRRFIRKQPHLAEFHKWLTSNMESGNITRQEAVSMLPPLFLDVHPKHLVLDMCAAPGSKTAQLMEMVSAPPPRAPDGXXXXXXAASGDNDDGEVGLVVANDSDRDRAYMLAHQCKRVKSPAICITWCPAQLLPNLGAAGAERGSDKGVFDRVLADVPCSGDGTLRKQPAIWRTWTVAGGLGLHPLQLLITLRGAAMLKV 825
            +A GI+ + +W  F K L  PLP  FRI+S C F D++++ + +  +   +VV+   V+ +  + WYP    +    +RR +RK P L  F  WL     SG+ITRQEAVSM+PPL L V P H VLDMCAAPGSKT+QL+E + +               A+G+      G+VVAND D  RAYML HQ KR+ SPA+ +T   AQ +P LG  G E  SD GVFDR+L D PCSGDGTLRK P IW+ W+   G+ LHPLQL I  RGAA+LKV
Sbjct:   53 KAQGIVPEADWEAFKKALATPLPTTFRINSSCPFADRIREHIEQDFKFDGLVVDDEPVEPISNMQWYPDNRGFTWSVERRRVRKLPILKAFQTWLVELSNSGSITRQEAVSMIPPLVLGVEPHHKVLDMCAAPGSKTSQLLESLHS------------QELATGNT---PTGVVVANDVDLKRAYMLVHQSKRISSPALLVTCHEAQNIPFLGEEGTE--SD-GVFDRILCDAPCSGDGTLRKNPLIWKNWSAKNGIALHPLQLQIAKRGAALLKV 310          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10231.358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LDC1_9PHAE7.120e-16187.64SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=... [more]
D8LLJ3_ECTSI3.190e-9389.33SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=... [more]
A0A835ZA58_9STRA4.560e-8361.24S-adenosyl-L-methionine-dependent methyltransferas... [more]
H3HAP2_PHYRM1.470e-7547.83SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=... [more]
G4ZPP8_PHYSP7.210e-7547.48SAM_MT_RSMB_NOP domain-containing protein (Fragmen... [more]
A0A484DRY9_BRELC1.060e-7448.19SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=... [more]
A0A662X353_9STRA1.300e-7448.24SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=... [more]
A0A8K1C4V8_PYTOL2.950e-7447.83Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W2QK78_PHYPN4.810e-7447.10SAM_MT_RSMB_NOP domain-containing protein n=15 Tax... [more]
A0A421F623_9STRA1.250e-7347.83SAM_MT_RSMB_NOP domain-containing protein n=4 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10231contigS-firma_F_contig10231:30..4987 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LLJ3
PFAMsMethyltr_RsmB-F,zf-CCHC_2
Max annot lvl2759|Eukaryota
KEGG koko:K15334,ko:K15335
Evalue4.86e-94
EggNOG OGsCOG0144@1|root,KOG2198@2759|Eukaryota
EC2.1.1.202,2.1.1.203
DescriptiontRNA (cytosine-5-)-methyltransferase activity
COG categoryJ
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Exons5
Model size825
Cds size819
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10231.358.1prot_S-firma_F_contig10231.358.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10231 30..4981 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815552.8851469-CDS-S-firma_F_contig10231:29..1871622815552.8851469-CDS-S-firma_F_contig10231:29..187Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10231 30..187 -
1696949410.9112484-CDS-S-firma_F_contig10231:29..1871696949410.9112484-CDS-S-firma_F_contig10231:29..187Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10231 30..187 -
1622815552.8949816-CDS-S-firma_F_contig10231:724..10191622815552.8949816-CDS-S-firma_F_contig10231:724..1019Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10231 725..1019 -
1696949410.9283934-CDS-S-firma_F_contig10231:724..10191696949410.9283934-CDS-S-firma_F_contig10231:724..1019Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10231 725..1019 -
1622815552.9043407-CDS-S-firma_F_contig10231:1513..16241622815552.9043407-CDS-S-firma_F_contig10231:1513..1624Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10231 1514..1624 -
1696949410.9454274-CDS-S-firma_F_contig10231:1513..16241696949410.9454274-CDS-S-firma_F_contig10231:1513..1624Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10231 1514..1624 -
1622815552.9142182-CDS-S-firma_F_contig10231:3346..34971622815552.9142182-CDS-S-firma_F_contig10231:3346..3497Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10231 3347..3497 -
1696949410.9637346-CDS-S-firma_F_contig10231:3346..34971696949410.9637346-CDS-S-firma_F_contig10231:3346..3497Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10231 3347..3497 -
1622815552.9278195-CDS-S-firma_F_contig10231:4877..49811622815552.9278195-CDS-S-firma_F_contig10231:4877..4981Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10231 4878..4981 -
1696949410.9779708-CDS-S-firma_F_contig10231:4877..49811696949410.9779708-CDS-S-firma_F_contig10231:4877..4981Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10231 4878..4981 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815552.9380016-UTR-S-firma_F_contig10231:4981..49871622815552.9380016-UTR-S-firma_F_contig10231:4981..4987Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10231 4982..4987 -
1696949410.9869916-UTR-S-firma_F_contig10231:4981..49871696949410.9869916-UTR-S-firma_F_contig10231:4981..4987Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10231 4982..4987 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10231.358.1

>prot_S-firma_F_contig10231.358.1 ID=prot_S-firma_F_contig10231.358.1|Name=mRNA_S-firma_F_contig10231.358.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=273bp
MGIMTKEEWPVFMKTLKDPLPACFRIHSDCSFKDQVKKQLMELLEAPMVV
EGREVKAVQELPWYPGALAYRLGCDRRFIRKQPHLAEFHKWLTSNMESGN
ITRQEAVSMLPPLFLDVHPKHLVLDMCAAPGSKTAQLMEMVSAPPPRAPD
GAPDGAPAASGDNDDGEVGLVVANDSDRDRAYMLAHQCKRVKSPAICITW
CPAQLLPNLGAAGAERGSDKGVFDRVLADVPCSGDGTLRKQPAIWRTWTV
AGGLGLHPLQLLITLRGAAMLKV
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mRNA from alignment at S-firma_F_contig10231:30..4987-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10231.358.1 ID=mRNA_S-firma_F_contig10231.358.1|Name=mRNA_S-firma_F_contig10231.358.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=4958bp|location=Sequence derived from alignment at S-firma_F_contig10231:30..4987- (Sphaerotrichia firma ET2_F female)
CAGGCCATGGGCATCATGACCAAGGAGGAGTGGCCGGTGTTCATGAAGAC CCTCAAGGATCCCCTGCCGGCGTGCTTCCGGATACACTCCGACTGTAGCT TCAAGGACCAGTGAGTGACTCCTGCACAGAGCGAAGAAACGACAAAAGCG TATATATGTGTGTACATCGAAAGAGCCGTAAGAGGGAAAGGCAGGATTTT GTCGACGTGTTTCTCGGATCAATTCGATGCTTGTTTGATACATAGGATGG CGCTTCGTCTGGGTCTCCATCCCCAGGTGCCTACTTCGTATTTGTTCATT TATTTATTTGTTTTTCTCCTTCCATTGGTGTTTCTGTCGACTGCCACAAT AACACAGCAGCATCACTGCTGTGTACACAAGGAAGAAAAAAGCCCCAGTG CTTCCCCCGCTCCTGTGTGAACCCCGGTTGGTTCTAGATGTACAGAAGTA CACTGCAAGGCGTCGTCGTAACCTTGATACACCGCAAGGTGTTTCGTAAG TACACGTCTCACCTTGGCCGGCAGGACTGTCGGCAAAACAATGAGACGAA AAACCCACGCACAAAACGACAAAGCCGGAAACGTCAGGCAGAAAAAAGAA AGAAAGAAAGCCAAAATAACAAGAAAGGCTCCTGTCTGTCCTCGCGTGCG GATGGATCGGACTGACCCGATGCTTGCCCTCAGTTTTCGCTCAAGTTGGG GCTGCACGCCGCAGCTTCGAGACGCTTCGAAATGCCGCTCGAGTATCTAC GTAGATTACGTAGATTGAGAGGTGGAGCACGTCAGTCGCCCTACTCTATT CCACCGTTGCGGCTTCTCCCAGATCACGGAGCAAAAGGCACAGGCGAGTC CACCCCACCACCATGAACCATGAAATAGGCTAAATTTACCCTCTTGCTCT CGGATACAAAGCCTCTCCACCTCGTGGAGACATTAAGGCATTAGCCTAGA CGACATTGAGGCCGCAGCATCAGCCTAGACGACACGAAGGCCGCAGCATT AGCCTAGACGACATACGGCCGCAGCATTAGCCTAAACGGCATCAAGGCCG CAGCATTAGCCTAGACGACATAAGGCCGCAGCATGAGCCTACACGACACT AAGGCCGCAGCATTAGCCTACACGACATAAAAAGACGGAAAAGGACCACA GACAAAGCTCTTCGACCTCCTCGACGGTCTTACCCCCGCCGAAAGAAATG TCTCACGAATCTCACGAACAAACAAACGTGCATCATCGCTAAAAGATCGT TGTGGGTCGACTACAGTAGCGGCTACGGTTTAAGCGAAATCATTTCAAGA GAGAGCATGGATTCAAAGAGAGGAAAATGGCTAGCCCCGCCTACAATACA CTAACTCCTATTCCAACCCCCATTCGGTCCAAGAGAAAGCCGAATTCAAG AGAGTGAAACTGGCTTATCGCCACCCTCTCTCGAACCGTAGCCGCCACTG TAAACTGAAAGTGGACTCGAACGCGTGGCCTGACTGGCAGGGTGAAGAAG CAGCTTATGGAGCTCCTGGAGGCCCCGATGGTGGTCGAAGGCAGGGAGGT GAAGGCGGTGCAGGAGCTGCCCTGGTATCCGGGGGCCCTCGCGTATCGCC TAGGGTGCGACCGCCGGTTCATCCGCAAGCAGCCGCACCTGGTGAGAGAG AGACGAGAGAGGCAGCCGCTTCGTGTAGTGGTGGTTGGGTCAATTGCTGC TGCTGCTGCGGCTGCTGTGTGTGTGTGTGTGTGTGCCAGTTCTGCTTCGA CGATTGCGCTCCTTCGTCTCCCCTTTGCGGTTTCTTGTGCGAAACCGTCG GCGTTCTACGGGCGCTGCACCAGATGTGATCGGTTCGAACTGCTGTCTTT CTTTCCCGGGGACTTTACTCTGTTGTGTTGTATTGTGTGTGTGTGTGTGT GTGTGTTTTCCTCCCGTTATTGGATTCTGCCGTCTGCCCTACTGGCCCCT ATCCTCCGCTATGACTAGCTGGACGGCCCAACCGGGGTCACACAGACAGG AGGGGAGTTAGGGGGGGACCCCCTCCTGCCGTGCTTGTTGAGTATTAGGC ACACTTAATGTAATGTTGCATGCCGCTTTAAATAGTGCGTGAGTTCGCAC AGGGGGTACAAGGGAGGTGAAGTTTTTGGCGGCGGGATACCTCGCCAAAG AGGGCAGGTTGTCGAATTTCGAAACCCCGATTTTAATTTTATCCGACCGG TCTCGGCAAGATGTGTATGCACGTTCCAGATGGCATATTCTCCGACGTTG TTGACCCTCCCCATTGTAGAGATAACGGATGTGTATGCACGTTCCAGATG GCAAATTCTCCGACGTTGTTGACCCTGCCCATTGTAGAGATAACGGATGT GTATGCACGTTCCAAACGGGATATTCTCCGACGTTGTTGACCCTCCCCAT TGTAGAGATAACGGATGTGTATGCACGTTCCAAATGGCATACGTATTCTC CAACGTTGTTACTCTCCCCATTGTAGAGATGAACGGCCGTGAAAGGCGTC GCTATTTACATATTTACGGTGTTGACCCGTTCTCTCGCCGCGCCCAATTG ACAACGGTACAGACCCCCCCCAAGTCATTTGATAGTGAAAAAGGTGTCTT CGTAGTTTTTTAATAGTGCAGTTCATTCCATAGGTGAGAGAAAACTTATG GAGCCTGCGCGCCCAACGCCGCCTATCCTCGGATACGGATAACTTTACAT GGTCCGCACGACCTGCACCGCAGTGTGGTTGCCCCGTCCCCCCCGTACGA CAATTTAGACTGCGTTTCTTTTTTTCCTCCCAAAACATCCAAGTTCCACC GGTGTCAAACGCGCACCCCCTTCTTCCGCCCCCACAAAAATCAGCTGGGG GCACCCAGGACGATCTATTTAATAGCGCAGTTAATTCCATAGTTTACTTC ATGGTATGGTTTAGTTTCGGGGGTTGTGCCTTGGCGATCCGTCCTGAGGC GCAGCCTCCACCTGAAAAAAAGCCATTTTTTGGGGGGGGGGGTCGTGGTC TTGCACGAGTTTTGCCGTCGTCGAGGGAGTCTTTCTTTGGCGCGTCTCCG GTTTTGTTCTGGAGTGTAACGTATGCGTAACGGCTGCGTTTGGTCGCCTC TCGAACTCGAACATGCTACCACGAGAACATGCTGCCAGCTAACATGTTAA TATGCTAATATGCTACCATGCGAACATGTTGATATGCTGACATGTTAGTA AGCTATCATGCTAACATACTGACATGTTAATATGTTGATATGCTACCATG CTACCATCCTAACATGTAAATATGCAAACATGCTACCATGCGAACATGCT AGCCATGCTAACCATGCGAACATGCTAACGTGCTACCGTGCTAACATGCG AACATGCTCTCAGGCCGAGTTTCACAAGTGGCTGACCAGCAACATGGAGA GCGGCAACATCACGCGGCAGGAGGCCGTGAGCATGCTACCCCCTCTCTTC CTCGACGTGCACCCGAAGCACCTGGTGAGTCTGGCACCGTACTGCAGCCC CACGAAAGAAGGAAGGCAGAGCTGCTGCGCAGGTGGAGGTGCTGATACTG TACCCCTTCCGGTCTTTTTTTTTTTTTCTCACGTCACGTCATCCCCCTGT ACGTATGGAACTTTATTCGCCACGGAGCTCCCTGTCTCTCACAAAATGTT TTTACGTAGTTTGTGTTTGTTCTTTAGTTTCTTTAAGAATGAAAAATACA CGGAAAAAACAGCGATACTGCTGTAGAGATTCTACACCCGCTTTTCCACT CGCATCACACCCACGACGCCCCCGTTCTACCACGCACTTACCCCCACCCG CCCTGCACGTTCGATCCGCCGCAATAGGGGGGTAGGGTGGGTGGGTGGAG GAGGCGCAGCCGTCTCTAACGCCAAAGTTGTAACGGAACGCATCCATCCT CTCCGGACTTTTTTTTTTTTTTAAATCTCATGTTTTATGTTTATTTTTAT TTTCTTTCTTACGGGCAGGTGCTCGACATGTGCGCAGCGCCAGGCTCCAA GACGGCGCAGCTGATGGAGATGGTGTCCGCCCCCCCCCCCCGCGCCCCTG ACGGTGCCCCTGACGGTGCTCCCGCCGCGAGCGGGGACAACGACGACGGG GAGGTCGGGCTGGTGGTGGCCAACGACAGCGATCGTGACCGGGCGTACAT GCTGGCGCACCAGTGCAAGAGGGTCAAGAGCCCCGCCATATGCATCACGT GGTGCCCGGCGCAGCTGCTTCCCAACCTGGGGGCCGCCGGGGCCGAGAGG GGCTCGGACAAGGGTGGGTGATTCTTTTGTTGGCGGTGGTGATGGTGGTG GTGGTGGTGGTTGTTGTCGTTGGTGTTGTTGTCGTTGGTGTTTGGTGGTG GTGGTGGTGGTGGTGGTGGTGGTGGTATTAGTGTTGTCGTCGTCGTTGTC GTCGTCGTTGTTGTTGTTGTTGTTGTTGTTTGTGGTCGCACAGGCTTCGT CAGTCCCTGCAGCCCTGTGCTACAGTATAGTACCCAGTTGCGCCCTCGCC TACGGGCAGACGAAAGAGGGCAGGTCTCTTGGTTTTGCGGACACCATGTC TTGATACGTCTTGACAGTCTCACATCACACGTCTTGACCCGTATCTTGGA CACATCTCACACGTCTTAGGTGTCTCAGGTCTCACACGTCTTGACCCGTG TCTTGGACGCATGTCACACGTCTTAGGTGTCTCAGGTCTCACACGTCTTG CATGTCTTGACACATCTCACACGTCCTATCTACATGTCTCATGTCACATG TCTGACACGCCTTGACAGTCTCATGCCACACATACGTCCACGCCCGGCAG GTGTGTTCGACCGAGTCCTGGCCGATGTGCCTTGCAGCGGCGACGGCACC CTCCGTAAGCAGCCGGCGATCTGGAGGACTTGGACGGTCGCCGGCGGCCT CGGCCTGCACCCGCTGCAGCTGCTCATCACCCTCCGAGGGGCCGCCATGC TCAAAGTG
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Coding sequence (CDS) from alignment at S-firma_F_contig10231:30..4987-

>mRNA_S-firma_F_contig10231.358.1 ID=mRNA_S-firma_F_contig10231.358.1|Name=mRNA_S-firma_F_contig10231.358.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1638bp|location=Sequence derived from alignment at S-firma_F_contig10231:30..4987- (Sphaerotrichia firma ET2_F female)
ATGGGCATCATGACCAAGGAGGAGTGGCCGGTGTTCATGAAGACCCTCAA
GGATCCCCTGCCGGCGTGCTTCCGGATACACTCCGACTGTAGCTTCAAGG
ACCAATGGGCATCATGACCAAGGAGGAGTGGCCGGTGTTCATGAAGACCC
TCAAGGATCCCCTGCCGGCGTGCTTCCGGATACACTCCGACTGTAGCTTC
AAGGACCAGGTGAAGAAGCAGCTTATGGAGCTCCTGGAGGCCCCGATGGT
GGTCGAAGGCAGGGAGGTGAAGGCGGTGCAGGAGCTGCCCTGGTATCCGG
GGGCCCTCGCGTATCGCCTAGGGTGCGACCGCCGGTTCATCCGCAAGCAG
CCGCACCTGGGTGAAGAAGCAGCTTATGGAGCTCCTGGAGGCCCCGATGG
TGGTCGAAGGCAGGGAGGTGAAGGCGGTGCAGGAGCTGCCCTGGTATCCG
GGGGCCCTCGCGTATCGCCTAGGGTGCGACCGCCGGTTCATCCGCAAGCA
GCCGCACCTGGCCGAGTTTCACAAGTGGCTGACCAGCAACATGGAGAGCG
GCAACATCACGCGGCAGGAGGCCGTGAGCATGCTACCCCCTCTCTTCCTC
GACGTGCACCCGAAGCACCTGGCCGAGTTTCACAAGTGGCTGACCAGCAA
CATGGAGAGCGGCAACATCACGCGGCAGGAGGCCGTGAGCATGCTACCCC
CTCTCTTCCTCGACGTGCACCCGAAGCACCTGGTGCTCGACATGTGCGCA
GCGCCAGGCTCCAAGACGGCGCAGCTGATGGAGATGGTGTCCGCCCCCCC
CCCCCGCGCCCCTGACGGTGCCCCTGACGGTGCTCCCGCCGCGAGCGGGG
ACAACGACGACGGGGAGGTCGGGCTGGTGGTGGCCAACGACAGCGATCGT
GACCGGGCGTACATGCTGGCGCACCAGTGCAAGAGGGTCAAGAGCCCCGC
CATATGCATCACGTGGTGCCCGGCGCAGCTGCTTCCCAACCTGGGGGCCG
CCGGGGCCGAGAGGGGCTCGGACAAGGGTGCTCGACATGTGCGCAGCGCC
AGGCTCCAAGACGGCGCAGCTGATGGAGATGGTGTCCGCCCCCCCCCCCC
GCGCCCCTGACGGTGCCCCTGACGGTGCTCCCGCCGCGAGCGGGGACAAC
GACGACGGGGAGGTCGGGCTGGTGGTGGCCAACGACAGCGATCGTGACCG
GGCGTACATGCTGGCGCACCAGTGCAAGAGGGTCAAGAGCCCCGCCATAT
GCATCACGTGGTGCCCGGCGCAGCTGCTTCCCAACCTGGGGGCCGCCGGG
GCCGAGAGGGGCTCGGACAAGGGTGTGTTCGACCGAGTCCTGGCCGATGT
GCCTTGCAGCGGCGACGGCACCCTCCGTAAGCAGCCGGCGATCTGGAGGA
CTTGGACGGTCGCCGGCGGCCTCGGCCTGCACCCGCTGCAGCTGCTCATC
ACCCTCCGAGGGGCCGCCATGCTCAAAGTGGTGTGTTCGACCGAGTCCTG
GCCGATGTGCCTTGCAGCGGCGACGGCACCCTCCGTAAGCAGCCGGCGAT
CTGGAGGACTTGGACGGTCGCCGGCGGCCTCGGCCTGCACCCGCTGCAGC
TGCTCATCACCCTCCGAGGGGCCGCCATGCTCAAAGTG
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