mRNA_S-firma_F_contig1023.355.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig1023.355.1 vs. uniprot
Match: D7FRK7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRK7_ECTSI) HSP 1 Score: 855 bits (2208), Expect = 3.030e-295 Identity = 515/866 (59.47%), Postives = 598/866 (69.05%), Query Frame = 3
Query: 51 MLRTTLAGVGATT---SACRKSAARQAAATSLTGVRD--GQPAPLCCLR--EWRRH-SSTQEAEQKGTVAEAGA-LGDVNTRRNPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXREEQEEKRGTFVVRTPNSLSPFKVAVPSTTAEAMAMNISIKEKSKRDAXXXXXXXXXXXVAPRAPRRSRPIGRKPTPAAYAATAGVAKAERPRAPSVMVVTPNASSKAIQMKVPRTTAECIQLNKAIRERYPGEVQQEHDHNNNKVNASYSDRWRNPPASAPSGGXXSSKGAHGGAAGSVLSSPQMFGYA---QGPGEPHLERTIGNLYNGTHWEQIVKVWEEIEEKEKGGEVVKLGHTTYEHIMSAFIAHMDLAVVARCGRVFDHLVASGQNIRPAMYNLYIKGCAVGKLGTRAVALIESLDRLPGKRYKPNPQFFYNLLSATSAECMVSESKLYYGVMRDMGYDASNHVFQSLLDMFIREKRLVDALRIVEDTHQAAGMKPRDALMNKLTYSSMRHGEPELMHKTLDLLLLTSNVVNPLTVKNVLYMATRQRDVDMATKIWVAAQQWGHRFSQPDYSFMVQTFFAVGKDDMALATLVQAYKASKSSSSQKHRERIEVTRKTLTFAAQRLAVSNKRLDEAYYTLTLLKDSGEPVPVEAVNTIVVGCAIRQATDRCFATAEALPVVFDLAPNLDTYNALMHVLGNMRAQDNDNVALGIGMSLLDQIEQEDVKPNQETFMSLVDLVCMSDGLTEDFATNLVERMTAKHGLRLDQDIVDTLASAFEDRGMDSLSQQWADKMPSLEDVAPALDSNSLPAPPGA----------ATFT-HQGESGGAEVRARRVAQDRGRYTGFDDGRFKALRHST 2579
M+RTT+AGV + +A SAARQ A++ G R A C R RRH SS +EAE+K + +A +GD + ++ + + TFVVRTP+S S KV VPSTTAEAMAMN+SI+E + R XXXXXXXXXX T G AER R PS+MVVTPNA SK+IQM+VP TTAECI+LN+A++ERYP + Q+ + +NN VNA YS RWRNPPA GG +G H + S P++ YA Q EP +RTIGNL+ W+QIV+VWEEIEE+EK G V LG TTYE +M AFI+H GC+V +LGTRAVALIE LDRLPGKR+KPNPQFF+NLLSAT AE MV ESKLYYG+MRDMG++ +N+ Q++LDM+IRE RLVDALR+VEDTHQA GM+PRD LMNKLTY+ MR GEPELMHKTLDLLLLT N+VNP+TVKNVLYMATR+RD DMATK+WVAAQQWGH FSQ DYSF+VQTFFAVGKDDMALATLVQAYK E++EV RKTLTF AQRLAVSNKR+D+AYYTLTLLK++GEPVPVEAVN+I+V CAIRQA DRCFATAEALPVVF+LAPNLDTYNALMHVLG MRAQD DN LGIGMSLLDQIE+E+VKPNQETFMSL+DL CMSDGLTEDFA +LVERMT+KHGLRL+QDIVDTLASAFE+RGMDSL+Q W +KMPSL+ + S PA A FT QG VRARRVAQDRGRYTGFDDGRFKA+R ST
Sbjct: 1 MIRTTIAGVDSLLHRGAAAATSAARQGASSRGLGDRQQHASAAVAICWRGGPTRRHWSSQKEAEEKDSAGDAAVDVGDYSPDATATTE--------------------------EPAPPKPQRTFVVRTPDSSSSLKVTVPSTTAEAMAMNLSIRENA-RAKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRG-RPAERRRVPSMMVVTPNARSKSIQMEVPLTTAECIKLNRAVKERYPTQQQEADEDSNNGVNAGYSRRWRNPPAPGVGGG----QGLHHAYGAGLSSFPEIVRYADVEQSAREPSYDRTIGNLHKARRWDQIVRVWEEIEEREKRGVTVGLGWTTYECLMDAFISH---------------------------------GCSVARLGTRAVALIEGLDRLPGKRFKPNPQFFFNLLSATCAEGMVGESKLYYGIMRDMGFEPTNNTLQNMLDMYIREDRLVDALRVVEDTHQA-GMRPRDPLMNKLTYACMRQGEPELMHKTLDLLLLTGNIVNPMTVKNVLYMATRRRDDDMATKMWVAAQQWGHSFSQADYSFVVQTFFAVGKDDMALATLVQAYK-----------EKVEVNRKTLTFCAQRLAVSNKRVDQAYYTLTLLKENGEPVPVEAVNSIIVACAIRQAVDRCFATAEALPVVFELAPNLDTYNALMHVLGAMRAQDTDNATLGIGMSLLDQIEKEEVKPNQETFMSLIDLACMSDGLTEDFADDLVERMTSKHGLRLEQDIVDTLASAFEERGMDSLAQAWTNKMPSLDAPSDETFDASSPAXXXXXXXXXXXXXXADFTCEQGNGSDGVVRARRVAQDRGRYTGFDDGRFKAIRDST 789
BLAST of mRNA_S-firma_F_contig1023.355.1 vs. uniprot
Match: A0A2K1LA39_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1LA39_PHYPA) HSP 1 Score: 62.4 bits (150), Expect = 4.440e-6 Identity = 31/105 (29.52%), Postives = 55/105 (52.38%), Query Frame = 3
Query: 1908 LDEAYYTLTLLKDSGEPVPVEAVNTIVVGCAIRQATDRCFATAEALPVVFDLAPNLDTYNALMHVLGNMRAQDNDNVALGIGMSLLDQIEQEDVKPNQETFMSLV 2222
LD AY+ L + SG+PVP+ A+N +++GCA DR + T E++ F L P+ + NAL+ G N + L + +++ + P+Q +F ++
Sbjct: 443 LDGAYFKLAEMHASGQPVPIAAINCVILGCANIWDADRAYQTFESISSTFGLRPDSHSINALLEAFGK-------NKKTAEAVKLFEYMKESGIAPDQRSFELMI 540 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1023.355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1023.355.1 >prot_S-firma_F_contig1023.355.1 ID=prot_S-firma_F_contig1023.355.1|Name=mRNA_S-firma_F_contig1023.355.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=917bp MLRTTLAGVGATTSACRKSAARQAAATSLTGVRDGQPAPLCCLREWRRHSback to top mRNA from alignment at S-firma_F_contig1023:4038..15725+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig1023.355.1 ID=mRNA_S-firma_F_contig1023.355.1|Name=mRNA_S-firma_F_contig1023.355.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=11688bp|location=Sequence derived from alignment at S-firma_F_contig1023:4038..15725+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig1023:4038..15725+ >mRNA_S-firma_F_contig1023.355.1 ID=mRNA_S-firma_F_contig1023.355.1|Name=mRNA_S-firma_F_contig1023.355.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=5502bp|location=Sequence derived from alignment at S-firma_F_contig1023:4038..15725+ (Sphaerotrichia firma ET2_F female)back to top |