mRNA_S-firma_F_contig1023.354.1 (mRNA) Sphaerotrichia firma ET2_F female
|
Overview
Homology
BLAST of mRNA_S-firma_F_contig1023.354.1 vs. uniprot
Match: D7FV39_ECTSI (5'-nucleotidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV39_ECTSI) HSP 1 Score: 482 bits (1241), Expect = 7.470e-164 Identity = 273/434 (62.90%), Postives = 312/434 (71.89%), Query Frame = 3
Query: 216 MGPIHGSANVAGKTQRIRSLLRERHDSPADGLQVIMDFDLTMTAPGSEQCHHMFETSSALPGELRRRLAPFFTGELELTTRDAWWEGFHAVLCDARVSKAQVAAVAGGADLTLRPGTADLMLLLQEIGVPLLVVSAGITDIVAETLRLHGLLLDNVTVRANTMLFGEDERLERFRESPPVHSRNKDQTVERERSYFFDSHKHRRCVVVVGDKPGDADVTAGFAPDDRCLKIGFFDHSHEHPHPDLPPLXXXXX--------PAAVDANGGRAGGNGRRNSGAVLEGLGFLSGTNSPVL------LENGPAASSA---ETFWSTSSLEEDERLQGRPGSQGGGEVFVSSSAGELRESESGEGREPGGTAVAADEMLRAYGESFDVVACGGHSMDIVADFVRHFIGASPPDAAADA*TET*N*RRKCTHTTPPKRK 1466
MGPIHGSA V K + IR+ LRE HD PA GLQVIMDFDLTMTAPGSEQCHHMFETS ALP +LRRRLAPFFTGE+ELTTR+AWWEGFH VL DA+V+KAQVAAVAGGADL LR GTA+LMLLLQE GVPLLVVSAGITDIVAETL +GLLLDNVTVRANTM FGED +LERFRES PVHSRNKD+T ERE++YF DS HRR +++VGDKPGDADV GFAPDD+CLKIGFFDHSHE DLPPL P A +NG AG + A LEGLGFL G N +L +E+ AA++A + S+ E ER++GRPGSQGGGE+FVS E E T A+E+LRAYG+ FDVVACGGHSMD+V DFVRHF+G A A TE R + + P+++
Sbjct: 1 MGPIHGSAAVGAKVESIRTALRELHDHPAHGLQVIMDFDLTMTAPGSEQCHHMFETSPALPEKLRRRLAPFFTGEIELTTREAWWEGFHDVLIDAKVTKAQVAAVAGGADLALRDGTAELMLLLQERGVPLLVVSAGITDIVAETLSRNGLLLDNVTVRANTMHFGEDGKLERFRESTPVHSRNKDKTAEREKAYF-DSTSHRRRLLIVGDKPGDADVNTGFAPDDQCLKIGFFDHSHEXXXXDLPPLPAPPAVTMSSAAAPVAAASNG-LAG-----ETTATLEGLGFLRGANRLMLRTTQSPMESTAAAAAAVQGSGAFQLSTSAEQERIRGRPGSQGGGEIFVSERGQEXXXXXXXE------TTAVAEELLRAYGDRFDVVACGGHSMDLVTDFVRHFVGDGGNSAVASVDTEAR--RHEARQSASPRKR 419
BLAST of mRNA_S-firma_F_contig1023.354.1 vs. uniprot
Match: A0A7S2X965_9EUKA (5'-nucleotidase n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2X965_9EUKA) HSP 1 Score: 119 bits (298), Expect = 2.290e-26 Identity = 77/232 (33.19%), Postives = 127/232 (54.74%), Query Frame = 3
Query: 249 GKTQRIRSLLRERHDSPADGLQVIMDFDLTMTAPGSEQCHHMFETSSALPGELRRRLA-----PFFTGELELTTRDAWWEGFHAVLCDARVSKAQVAAVAGGADLTL-RPGTADLMLLLQEIGVPLLVVSAGITDIVAETLRLHGLLLDNVTVRANTMLFGEDERLERFRESPPVHSRNKDQTVERERSYFFDSHKHRRCVVVVGDKPGDADVTAGFAPDDR--CLKIGFFD 920
G ++I SL +++ + I+DFD T+++ S +CHHM TS+ +P E ++ P TG+L WW+ H ++ + ++S+ Q+ + D + RPG DL+ LL++ +P+L+VSAG+ D++ L G N V +N M+F + +++ F E P + SRNK T ER + FFD H R+ +++GD P DAD+ P +R C+ IGF D
Sbjct: 28 GAEEKISSLRKDK-------MMAIIDFDRTISSKESVECHHMVGTSNVMPKEFLQKFTILIDNPKITGQL-------WWDLAHGLMLEYQLSEQQIDEIVAKEDHCIPRPGMRDLLALLEKEEIPVLIVSAGLQDVIERILAKWGFQFKNARVVSNKMVFDSEGKIKNFTE-PQITSRNKRLTYERNIA-FFDHHIDRKQFLIIGDSPRDADIKDDI-PIERGTCITIGFND 242
BLAST of mRNA_S-firma_F_contig1023.354.1 vs. uniprot
Match: A0A7S2NJK1_9EUKA (5'-nucleotidase n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2NJK1_9EUKA) HSP 1 Score: 112 bits (281), Expect = 4.770e-24 Identity = 68/204 (33.33%), Postives = 105/204 (51.47%), Query Frame = 3
Query: 309 LQVIMDFDLTMTAPGSEQCHHMFETSSALPGELRRRLAPFFTGELELTTRDA-WWEGFHAVLCDARVSKAQ-VAAVAGGADLTLRPGTADLMLLLQEIGVPLLVVSAGITDIVAETLRLHGLLLDNVTVRANTMLFGEDERLERFRESPPVHSRNKDQTVERERSYFFDSHKHRRCVVVVGDKPGDADVTAGFAPDDRCLKIGF 914
L +I DFD T+T+ S+QCH +F S + R + AP WW+ HA++ + Q + + A++ RPG +++ E+G+P+L+VSAGI+D++ E LR HG L +NVTV +N + + D + SPP+ S K S FF H RR ++V+GD D D + P D+ L +GF
Sbjct: 34 LMLITDFDATITSGDSQQCHDLFGESKLMSQAFRSQFAPLLDWAANPDIDGVEWWDRAHALMVQYGMPPRQLIPRLVREANMIPRPGALEMLKRCDELGIPVLIVSAGISDVIEEFLRQHGALTENVTVCSNRLNYAGDSTPKSTSPSPPITSFTKSYAYS-SASGFFSGHAERRYLLVLGDSVTDVDASQN-VPHDQSLSVGF 235
BLAST of mRNA_S-firma_F_contig1023.354.1 vs. uniprot
Match: A0A0M0JA97_9EUKA (5'-nucleotidase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JA97_9EUKA) HSP 1 Score: 112 bits (281), Expect = 8.510e-24 Identity = 69/207 (33.33%), Postives = 106/207 (51.21%), Query Frame = 3
Query: 300 ADGLQVIMDFDLTMTAPGSEQCHHMFETSSALPGELRRRLAPFFTGELELTTRDA-WWEGFHAVLCDARVSKAQ-VAAVAGGADLTLRPGTADLMLLLQEIGVPLLVVSAGITDIVAETLRLHGLLLDNVTVRANTMLFGEDERLERFRESPPVHSRNKDQTVERERSYFFDSHKHRRCVVVVGDKPGDADVTAGFAPDDRCLKIGF 914
A L +I DFD T+T SEQCH + S +P + R + AP WW+ H+++ V K Q + + +T RPG +L+ LQE+ +P+L+VSAG++D++ E LR HG L +NVTV +N + + D + PP+ S K S FF+ H R+ ++V+GD D D + P + L +GF
Sbjct: 51 AQNLLLITDFDATLTTGDSEQCHDLCGFSHVMPADFRSKFAPLLDWAANPDIDGVEWWDRAHSLMVQYGVPKRQLIPRLVREGKMTPRPGALELLRRLQELDIPVLIVSAGLSDVIEEWLRQHGALSENVTVCSNRLNYAADMTPKSVSPEPPITSFTKAYAYS-SASSFFEQHATRKHLIVLGDSVTDVDASK-HVPYEDFLSVGF 255
BLAST of mRNA_S-firma_F_contig1023.354.1 vs. uniprot
Match: A0A7S0HHM0_9EUKA (5'-nucleotidase n=2 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HHM0_9EUKA) HSP 1 Score: 112 bits (281), Expect = 1.320e-23 Identity = 82/270 (30.37%), Postives = 124/270 (45.93%), Query Frame = 3
Query: 180 VSSRRASATTLSMGPIHGSANVAGKTQRIRSLL--------------------RERH---DSPADGLQVIMDFDLTMTAPGSEQCHHMFETSSALPGELRRRLAPFFTGELELTTRDA-WWEGFHAVLCDARVSKAQ-VAAVAGGADLTLRPGTADLMLLLQEIGVPLLVVSAGITDIVAETLRLHGLLLDNVTVRANTMLFGEDERLERFRESPPVHSRNKDQTVERERSYFFDSHKHRRCVVVVGDKPGDADVTAGFAPDDRCLKIGF 914
V+S A A L+ P + A + G I +LL R+R D A+ + VI DFD T+T SEQCH + S L + R+ AP + WW+ H ++ + Q + + A + RPG +L+ L++ VP+L+VSAG++D++ E LR HG L +NV + +N + + D + PP+ S K+ S FF HKHRR ++ +GD D D A P D + IGF
Sbjct: 7 VASNNAIAMMLAKPPSNFEAAIIGAMAAISALLVLRARRQVCDWSPSAPFHWERKRAAMADLTANDVMVITDFDATITTGDSEQCHDLVGGSRLLSNDFRKDFAPLLDWTTDANIDGVPWWDAAHKLMVKHGMPPRQLIPRLVREAKMVPRPGALELLKSLEQHNVPVLIVSAGLSDVIEEFLRQHGALSENVVICSNRLNYDADVAPKSVTPDPPITSFTKEYAYS-SASSFFAEHKHRRAIIQLGDSLSDVDP-AKKVPYDHLISIGF 274
BLAST of mRNA_S-firma_F_contig1023.354.1 vs. uniprot
Match: A0A8C5QHH5_9ANUR (5'-nucleotidase n=2 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5QHH5_9ANUR) HSP 1 Score: 102 bits (255), Expect = 1.320e-20 Identity = 71/236 (30.08%), Postives = 114/236 (48.31%), Query Frame = 3
Query: 258 QRIRSLLRERHDSPADGLQVIMDFDLTMTAPGSE-----QCHHMFETSSALPGELRRRLAPFF------------TGELELTTRDAWWEGFHAVLCDARVSKAQVAAVAGGADLTLRPGTADLMLLLQEIGVPLLVVSAGITDIVAETLRLHGLLLDNVTVRANTMLFGEDERLERFRESPPVHSRNKDQTVERERSYFFDSHKHRRCVVVVGDKPGDADVTAGFAPDDRCLKIGF 914
+R+R L+ LQVI DFD+T++ G C+++ + S + + R++L F T E + WW H +LC+ + K ++A V + LR G L +PLL+ SAGI D++ E +R G+ N+ V +N M F E+ L F+ +H+ NK+ ++ R+R+YF K R +++VGD GD + G A D L+IGF
Sbjct: 17 ERVRELIMALQSGGEKKLQVISDFDMTLSRFGHNGERCPTCYNIIDNSKLISEDCRKKLKDLFNIYYPLEIDPDRTIEEKFPLMIEWWSKAHTLLCEQNIQKDKLAQVVKESQAMLREGFEVFFASLHRSEIPLLIFSAGIGDVLEEIIRQAGVFYPNINVVSNYMDFDENGILVGFK-GELIHTYNKNNSILRDRAYF-QQIKDRSNILLVGDTLGDLTMADGVAKLDNILRIGF 250
BLAST of mRNA_S-firma_F_contig1023.354.1 vs. uniprot
Match: A0A7K6IJ18_9CORV (5'-nucleotidase (Fragment) n=3 Tax=Passeriformes TaxID=9126 RepID=A0A7K6IJ18_9CORV) HSP 1 Score: 100 bits (249), Expect = 8.350e-20 Identity = 72/244 (29.51%), Postives = 118/244 (48.36%), Query Frame = 3
Query: 252 KTQRIRSLLRERHDSPADGLQVIMDFDLTMTAPG--SEQC---HHMFETSSALPGELRRRLA------------PFFTGELELTTRDAWWEGFHAVLCDARVSKAQVAAVAGGADLTLRPGTADLMLLLQEIGVPLLVVSAGITDIVAETLRLHGLLLDNVTVRANTMLFGEDERLERFRESPPVHSRNKDQTVERERSYFFDSHKHRRCVVVVGDKPGDADVTAGFAPDDRCLKIGFFDHSHE 932
+ +R+R +++ LQVI DFD+T++ G +C H++ +TS + + +++L P T E + WW H +L ++ K+ +A + ++ LR G + LQE VPL + SAGI DI+ E +R + NV V +N M F +D L F+E P +H+ NK+ TV + YF R ++++GD GD + G + LKIGF + E
Sbjct: 17 RPERVREIIQSLRQQGVAKLQVISDFDMTLSRFGCNGRRCPTSHNILDTSRVISEDGKKKLKDLLHYYYPIEIDPNRTLEEKCPLMVEWWTKAHELLVQQKIHKSDIAQIVRESEAMLRDGFKEFFDQLQENNVPLFIFSAGIGDILEEIIRQANVFYSNVNVVSNYMDFNDDGVLTHFKE-PLIHTYNKNNTVLQGTGYF-QQLSTRTSIILLGDSMGDLTMADGVPSVENILKIGFLNDKVE 258
BLAST of mRNA_S-firma_F_contig1023.354.1 vs. uniprot
Match: A0A8C5P4Q2_JACJA (5'-nucleotidase n=4 Tax=Jaculus jaculus TaxID=51337 RepID=A0A8C5P4Q2_JACJA) HSP 1 Score: 99.8 bits (247), Expect = 1.830e-19 Identity = 75/241 (31.12%), Postives = 118/241 (48.96%), Query Frame = 3
Query: 261 RIRSLLRERHDSPADGLQVIMDFDLTMT--APGSEQC---HHMFETSSALPGELRRRLA------------PFFTGELELTTRDAWWEGFHAVLCDARVSKAQVAAVAGGADLTLRPGTADLMLLLQEIGVPLLVVSAGITDIVAETLRLHGLLLDNVTVRANTMLFGEDERLERFRESPPVHSRNKDQTVERERSYFFDSHKHRRCVVVVGDKPGDADVTAGFAPDDRCLKIGFFDHSHE 932
R+R ++ AD LQVI DFD+T++ A ++C H++ + S + E R+ L+ P T + +L WW H +LC R+SK Q+A V + LR G L G+PL + SAGI D++ E +R +L N+ + +N M F ED L F+ +H+ NK+ +V E S +FD + + ++++GD GD + G LKIGF + E
Sbjct: 21 RVREIVGALRRGGADRLQVISDFDMTLSRFAYNGQRCPSSHNILDHSKIISEECRKELSALLRYYYPIEIDPQRTVQEKLPHMVEWWTKAHNLLCQQRISKFQIAQVVRESAAMLREGYKTFFDTLYHNGIPLFIFSAGIGDVLEEIIRQMKVLHPNIHIVSNYMDFTEDGFLRGFK-GQLIHTYNKNSSV-CENSGYFDKLQGKTNIILLGDSIGDLTMADGVPGVQNILKIGFLNDKVE 259
BLAST of mRNA_S-firma_F_contig1023.354.1 vs. uniprot
Match: A0A7K6BD51_UPUEP (5'-nucleotidase (Fragment) n=1 Tax=Upupa epops TaxID=57439 RepID=A0A7K6BD51_UPUEP) HSP 1 Score: 98.2 bits (243), Expect = 5.260e-19 Identity = 72/246 (29.27%), Postives = 121/246 (49.19%), Query Frame = 3
Query: 252 KTQRIRSLLRERHDSPADGLQVIMDFDLTMTAPG--SEQC---HHMFETSSALPGELRRRL-------APFFTGELELT-------TRDAWWEGFHAVLCDARVSKAQVAAVAGGADLTLRPGTADLMLLLQEIGVPLLVVSAGITDIVAETLRLHGLLLDNVTVRANTMLFGEDERLERFRESPPVHSRNKDQTVERERSYFFDSHKHRRCVVVVGDKPGDADVTAGFAPDDRCLKIGFFDHSHE 932
+ +R+R ++R + AD LQVI DFD+T++ G +C H++ + S + + +R++ AP G L+ + W H +L ++ K +A + +D+ LR G +L L E VPL + SAG+ D++ E +R + NV V AN M F + L+RF+ P +H+ NK+ +V + YF R ++++GD GD + G + LKIGF + E
Sbjct: 16 RPERVRGIIRSIRERGADRLQVISDFDMTLSRFGCNGRRCPTSHNILDNSRLISEDGKRKVGAPAWGAAPQLPGVSSLSPPHPDSLSASPRWSRAHELLSQQQIRKGDIAQIVRESDVMLRDGFQELFERLHEHRVPLFIFSAGVGDVLEEVIRQANVFHSNVNVVANYMDFDANGVLQRFK-GPLIHTYNKNNSVLQGTEYF-QQLSSRTSIILLGDSMGDLTMADGVPSVESILKIGFLNDKVE 259
BLAST of mRNA_S-firma_F_contig1023.354.1 vs. uniprot
Match: A0A7K9ZDK9_9CORV (5'-nucleotidase (Fragment) n=4 Tax=Passeriformes TaxID=9126 RepID=A0A7K9ZDK9_9CORV) HSP 1 Score: 97.4 bits (241), Expect = 9.490e-19 Identity = 70/242 (28.93%), Postives = 117/242 (48.35%), Query Frame = 3
Query: 258 QRIRSLLRERHDSPADGLQVIMDFDLTMTAPG--SEQC---HHMFETSSALPGELRRRLA------------PFFTGELELTTRDAWWEGFHAVLCDARVSKAQVAAVAGGADLTLRPGTADLMLLLQEIGVPLLVVSAGITDIVAETLRLHGLLLDNVTVRANTMLFGEDERLERFRESPPVHSRNKDQTVERERSYFFDSHKHRRCVVVVGDKPGDADVTAGFAPDDRCLKIGFFDHSHE 932
+R+R +++ + LQVI DFD+T++ G +C H++ +TS + + +++L P T E + WW H +L ++ K+ +A + ++ LR G + L + VPL + SAGI DI+ E +R + NV V +N M F +D L F+E P +H+ NK+ TV + YF R ++++GD GD + G + LKIGF + E
Sbjct: 19 ERVREIIQSLREQGVAKLQVISDFDMTLSRFGCNGRRCPTSHNILDTSRVISEDGKKKLKDLLHYYYPIEIDPNRTLEEKCPLMVEWWTKAHELLVQQKIHKSDIAQIVRESEAMLRDGFKEFFDQLHKNNVPLFIFSAGIGDILEEIIRQANVFYSNVNVVSNYMDFNDDGVLTHFKE-PLIHTYNKNNTVLQGTGYF-QQLSTRTSIILLGDSMGDLTMADGVPSVENILKIGFLNDKVE 258 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1023.354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1023.354.1 >prot_S-firma_F_contig1023.354.1 ID=prot_S-firma_F_contig1023.354.1|Name=mRNA_S-firma_F_contig1023.354.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=449bp MLLPGKDILRVCASSGLFLRHSSAWKLKIPVQGRPAWLHVSSRRASATTLback to top mRNA from alignment at S-firma_F_contig1023:671..3900- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig1023.354.1 ID=mRNA_S-firma_F_contig1023.354.1|Name=mRNA_S-firma_F_contig1023.354.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3230bp|location=Sequence derived from alignment at S-firma_F_contig1023:671..3900- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig1023:671..3900- >mRNA_S-firma_F_contig1023.354.1 ID=mRNA_S-firma_F_contig1023.354.1|Name=mRNA_S-firma_F_contig1023.354.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2694bp|location=Sequence derived from alignment at S-firma_F_contig1023:671..3900- (Sphaerotrichia firma ET2_F female)back to top |