mRNA_S-firma_F_contig10229.353.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10229.353.1
Unique NamemRNA_S-firma_F_contig10229.353.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10229.353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10229contigS-firma_F_contig10229:1337..1919 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size472
Cds size471
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10229.353.1prot_S-firma_F_contig10229.353.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10229 1337..1919 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815552.2417374-CDS-S-firma_F_contig10229:1336..14501622815552.2417374-CDS-S-firma_F_contig10229:1336..1450Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10229 1337..1450 +
1696949410.3278198-CDS-S-firma_F_contig10229:1336..14501696949410.3278198-CDS-S-firma_F_contig10229:1336..1450Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10229 1337..1450 +
1622815552.2535472-CDS-S-firma_F_contig10229:1508..17591622815552.2535472-CDS-S-firma_F_contig10229:1508..1759Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10229 1509..1759 +
1696949410.3438623-CDS-S-firma_F_contig10229:1508..17591696949410.3438623-CDS-S-firma_F_contig10229:1508..1759Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10229 1509..1759 +
1622815552.2681694-CDS-S-firma_F_contig10229:1813..19191622815552.2681694-CDS-S-firma_F_contig10229:1813..1919Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10229 1814..1919 +
1696949410.3618293-CDS-S-firma_F_contig10229:1813..19191696949410.3618293-CDS-S-firma_F_contig10229:1813..1919Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10229 1814..1919 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10229.353.1

>prot_S-firma_F_contig10229.353.1 ID=prot_S-firma_F_contig10229.353.1|Name=mRNA_S-firma_F_contig10229.353.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=157bp
PRPGCAGGAQRWLSGLPGGCGDGCQQKVPVWVSSVLQHGVPEQGLACPQG
PAQGRDAHPQGCRTNDLCGQVSPPSFSSHPQPCSTAFVHVPPKPTPSSCA
ECPSPINLETRGCYNCGKLFCSRCTEAHATSKACEAWRFLWSAVSAADLT
RIRAALD
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mRNA from alignment at S-firma_F_contig10229:1337..1919+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10229.353.1 ID=mRNA_S-firma_F_contig10229.353.1|Name=mRNA_S-firma_F_contig10229.353.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=583bp|location=Sequence derived from alignment at S-firma_F_contig10229:1337..1919+ (Sphaerotrichia firma ET2_F female)
CCAAGACCTGGTTGCGCAGGCGGTGCTCAACGTTGGCTGTCAGGCTTGCC
CGGAGGGTGTGGAGATGGTTGCCAGCAAAAAGTGCCCGTGTGGGTTAGTT
CAGTACTGCAGCACGTAGGTTATGGGGGCCGTGGTGGTGGGTTCGCTTGC
CTCACCGCGTCCGGTTGAACAGGGAGTGCCAGAACAGGGACTGGCCTGCC
CACAGGGCCCAGCACAAGGCCGCGATGCGCACCCGCAAGGCTGCCGCACC
AACGACCTCTGTGGACAGGTAAGCCCCCCTTCCTTCTCCTCTCACCCTCA
ACCGTGCAGCACGGCATTCGTCCACGTTCCGCCGAAACCCACGCCCAGCT
CCTGCGCGGAGTGCCCCTCTCCGATCAACCTGGAAACTCGCGGGTGCTAC
AATTGCGGCAAGCTTTTCTGCAGGTGTGTACACGTCCCACAGCGAGCCTG
TTTTCTTCCCTCACCCTACACAACCAGCCGCTGCACAGAGGCCCACGCCA
CGTCCAAGGCTTGCGAGGCGTGGAGGTTTTTGTGGAGCGCGGTGTCCGCA
GCGGACCTGACTCGCATCCGCGCCGCCTTGGAC
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Coding sequence (CDS) from alignment at S-firma_F_contig10229:1337..1919+

>mRNA_S-firma_F_contig10229.353.1 ID=mRNA_S-firma_F_contig10229.353.1|Name=mRNA_S-firma_F_contig10229.353.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=942bp|location=Sequence derived from alignment at S-firma_F_contig10229:1337..1919+ (Sphaerotrichia firma ET2_F female)
CCAAGACCTGGTTGCGCAGGCGGTGCTCAACGTTGGCTGTCAGGCTTGCC
CGGAGGGTGTGGAGATGGTTGCCAGCAAAAAGTGCCCGTGTGGGTTAGTT
CAGTACTGCAGCACCCAAGACCTGGTTGCGCAGGCGGTGCTCAACGTTGG
CTGTCAGGCTTGCCCGGAGGGTGTGGAGATGGTTGCCAGCAAAAAGTGCC
CGTGTGGGTTAGTTCAGTACTGCAGCACGGAGTGCCAGAACAGGGACTGG
CCTGCCCACAGGGCCCAGCACAAGGCCGCGATGCGCACCCGCAAGGCTGC
CGCACCAACGACCTCTGTGGACAGGTAAGCCCCCCTTCCTTCTCCTCTCA
CCCTCAACCGTGCAGCACGGCATTCGTCCACGTTCCGCCGAAACCCACGC
CCAGCTCCTGCGCGGAGTGCCCCTCTCCGATCAACCTGGAAACTCGCGGG
TGCTACAATTGCGGCAAGCTTTTCTGCAGGGAGTGCCAGAACAGGGACTG
GCCTGCCCACAGGGCCCAGCACAAGGCCGCGATGCGCACCCGCAAGGCTG
CCGCACCAACGACCTCTGTGGACAGGTAAGCCCCCCTTCCTTCTCCTCTC
ACCCTCAACCGTGCAGCACGGCATTCGTCCACGTTCCGCCGAAACCCACG
CCCAGCTCCTGCGCGGAGTGCCCCTCTCCGATCAACCTGGAAACTCGCGG
GTGCTACAATTGCGGCAAGCTTTTCTGCAGCCGCTGCACAGAGGCCCACG
CCACGTCCAAGGCTTGCGAGGCGTGGAGGTTTTTGTGGAGCGCGGTGTCC
GCAGCGGACCTGACTCGCATCCGCGCCGCCTTGGACCCGCTGCACAGAGG
CCCACGCCACGTCCAAGGCTTGCGAGGCGTGGAGGTTTTTGTGGAGCGCG
GTGTCCGCAGCGGACCTGACTCGCATCCGCGCCGCCTTGGAC
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