mRNA_S-firma_F_contig10220.343.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10220.343.1
Unique NamemRNA_S-firma_F_contig10220.343.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10220.343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10220contigS-firma_F_contig10220:641..1157 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size517
Cds size384
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10220.343.1prot_S-firma_F_contig10220.343.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10220 732..1115 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815551.5027008-UTR-S-firma_F_contig10220:640..7311622815551.5027008-UTR-S-firma_F_contig10220:640..731Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10220 641..731 +
1696949409.845136-UTR-S-firma_F_contig10220:640..7311696949409.845136-UTR-S-firma_F_contig10220:640..731Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10220 641..731 +
1622815551.5251374-UTR-S-firma_F_contig10220:1115..11571622815551.5251374-UTR-S-firma_F_contig10220:1115..1157Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10220 1116..1157 +
1696949409.8652263-UTR-S-firma_F_contig10220:1115..11571696949409.8652263-UTR-S-firma_F_contig10220:1115..1157Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10220 1116..1157 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815551.5160675-CDS-S-firma_F_contig10220:731..11151622815551.5160675-CDS-S-firma_F_contig10220:731..1115Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10220 732..1115 +
1696949409.8552275-CDS-S-firma_F_contig10220:731..11151696949409.8552275-CDS-S-firma_F_contig10220:731..1115Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10220 732..1115 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10220.343.1

>prot_S-firma_F_contig10220.343.1 ID=prot_S-firma_F_contig10220.343.1|Name=mRNA_S-firma_F_contig10220.343.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=128bp
MVRPGSWAKRLCPRHVRTAGCMAWLVQIRPNQVHTYNHTTLLFAWVTDSL
VLGRRRAARSNKRGGVVCLPYGEPSLRLLFFKETWNCSWWAVFPPRLSRL
RSEDGCMHNLLGTEQTPFSTQPCTRET*
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mRNA from alignment at S-firma_F_contig10220:641..1157+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10220.343.1 ID=mRNA_S-firma_F_contig10220.343.1|Name=mRNA_S-firma_F_contig10220.343.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=517bp|location=Sequence derived from alignment at S-firma_F_contig10220:641..1157+ (Sphaerotrichia firma ET2_F female)
AGTGGATTAAGCTAGGGTGGGTTCGGGTACGTAGGTTCAGGGTGACAGCG
AGTGGCGGGGAAGGAAGGCCTCCCTGTTGTTGGTGTGTTTGATGGTCCGC
CCGGGGTCGTGGGCTAAGAGGCTTTGTCCGCGGCATGTACGAACAGCCGG
CTGTATGGCATGGCTCGTTCAGATCAGACCAAACCAGGTGCACACATACA
ATCACACGACGCTGCTGTTCGCGTGGGTGACTGACTCCCTTGTGCTTGGG
CGGAGGCGAGCCGCGAGAAGCAATAAGAGGGGGGGTGTGGTGTGTCTCCC
CTACGGCGAGCCGTCTCTCCGATTGTTGTTTTTTAAAGAGACGTGGAATT
GTTCGTGGTGGGCTGTTTTTCCCCCCCGACTCTCTCGTCTCCGGTCGGAG
GACGGATGCATGCATAATTTACTAGGTACCGAACAAACACCATTCTCCAC
ACAGCCGTGCACTAGAGAGACTTGAAACAATGATAAGGTCGTTCGTCCGG
CGGTTGGCAACGGTCAT
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Coding sequence (CDS) from alignment at S-firma_F_contig10220:641..1157+

>mRNA_S-firma_F_contig10220.343.1 ID=mRNA_S-firma_F_contig10220.343.1|Name=mRNA_S-firma_F_contig10220.343.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=768bp|location=Sequence derived from alignment at S-firma_F_contig10220:641..1157+ (Sphaerotrichia firma ET2_F female)
ATGGTCCGCCCGGGGTCGTGGGCTAAGAGGCTTTGTCCGCGGCATGTACG
AACAGCCGGCTGTATGGCATGGCTCGTTCAGATCAGACCAAACCAGGTGC
ACACATACAATCACACGACGCTGCTGTTCGCGTGGGTGACTGACTCCCTT
GTGCTTGGGCGGAGGCGAGCCGCGAGAAGCAATAAGAGGGGGGGTGTGGT
GTGTCTCCCCTACGGCGAGCCGTCTCTCCGATTGTTGTTTTTTAAAGAGA
CGTGGAATTGTTCGTGGTGGGCTGTTTTTCCCCCCCGACTCTCTCGTCTC
CGGTCGGAGGACGGATGCATGCATAATTTACTAGGTACCGAACAAACACC
ATTCTCCACACAGCCGTGCACTAGAGAGACTTGAATGGTCCGCCCGGGGT
CGTGGGCTAAGAGGCTTTGTCCGCGGCATGTACGAACAGCCGGCTGTATG
GCATGGCTCGTTCAGATCAGACCAAACCAGGTGCACACATACAATCACAC
GACGCTGCTGTTCGCGTGGGTGACTGACTCCCTTGTGCTTGGGCGGAGGC
GAGCCGCGAGAAGCAATAAGAGGGGGGGTGTGGTGTGTCTCCCCTACGGC
GAGCCGTCTCTCCGATTGTTGTTTTTTAAAGAGACGTGGAATTGTTCGTG
GTGGGCTGTTTTTCCCCCCCGACTCTCTCGTCTCCGGTCGGAGGACGGAT
GCATGCATAATTTACTAGGTACCGAACAAACACCATTCTCCACACAGCCG
TGCACTAGAGAGACTTGA
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