mRNA_S-firma_F_contig10218.339.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10218.339.1
Unique NamemRNA_S-firma_F_contig10218.339.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10218.339.1 vs. uniprot
Match: D8LCR1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCR1_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 7.450e-8
Identity = 65/153 (42.48%), Postives = 76/153 (49.67%), Query Frame = 1 
Query:    7 VLVPGLWSRAVKAVMFPPGADGGXXXXXXXXA-----------------VVSDRFRAVCLGEGGGSXXXXNSGDGVQEGGRCSGGLTRATGRGEAPAKLAEQIVQAISALHL-PEEGGKFGEDGEGCELC--CGGAGAGGGACGGDDALALSS 405
            VL PGLW RAV AV+FP      XXXXXXXX                  VVS R + VC G+             V+ G +  GG        E    LA++I+QAI +LH  P    K  E+G GC LC   GG G  GGACGGDDALA+SS
Sbjct:  410 VLAPGLWRRAVAAVLFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVSARLKLVCFGD-------------VRRGQQREGGGPEE----ETADDLADKILQAIGSLHSNPGAEAKAEEEG-GCALCRGAGGGGYSGGACGGDDALAMSS 544
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10218.339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCR1_ECTSI7.450e-842.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10218contigS-firma_F_contig10218:2135..2895 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size406
Cds size405
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815551.1367807-CDS-S-firma_F_contig10218:2134..23341622815551.1367807-CDS-S-firma_F_contig10218:2134..2334Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10218 2135..2334 -
1696949409.602275-CDS-S-firma_F_contig10218:2134..23341696949409.602275-CDS-S-firma_F_contig10218:2134..2334Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10218 2135..2334 -
1622815551.1476257-CDS-S-firma_F_contig10218:2690..28951622815551.1476257-CDS-S-firma_F_contig10218:2690..2895Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10218 2691..2895 -
1696949409.610846-CDS-S-firma_F_contig10218:2690..28951696949409.610846-CDS-S-firma_F_contig10218:2690..2895Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10218 2691..2895 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10218.339.1prot_S-firma_F_contig10218.339.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10218 2135..2895 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10218.339.1

>prot_S-firma_F_contig10218.339.1 ID=prot_S-firma_F_contig10218.339.1|Name=mRNA_S-firma_F_contig10218.339.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=135bp
GEVLVPGLWSRAVKAVMFPPGADGGSGGGGAGGAVVSDRFRAVCLGEGGG
SGAGGNSGDGVQEGGRCSGGLTRATGRGEAPAKLAEQIVQAISALHLPEE
GGKFGEDGEGCELCCGGAGAGGGACGGDDALALSS
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mRNA from alignment at S-firma_F_contig10218:2135..2895-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10218.339.1 ID=mRNA_S-firma_F_contig10218.339.1|Name=mRNA_S-firma_F_contig10218.339.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=761bp|location=Sequence derived from alignment at S-firma_F_contig10218:2135..2895- (Sphaerotrichia firma ET2_F female)
GGGGAAGTGCTGGTGCCCGGGCTGTGGAGTCGAGCGGTGAAGGCGGTGAT
GTTTCCACCCGGCGCAGATGGTGGCAGCGGCGGCGGGGGAGCGGGTGGCG
CGGTCGTTTCTGACAGGTTTAGGGCCGTCTGCTTGGGCGAGGGAGGCGGT
AGCGGCGCCGGCGGCAACAGCGGCGACGGCGTCCAAGAGGGGGGACGTTG
TAGTGGTGGGTGTCAAGAGGAGGAGTTGAACCACGACGTGTGTGGCAATA
TTTCTTGCGCTAGGGGAAGGGGGTGCAGAGGGCAACCTTTTGTTGCCCAG
ACGAGGGTGTAGAGTCTGCGCCGTCTAGCGGAAGGCACACAATGGCCACG
CTCTGCTTGATTTTCGTTTCGCCGGTTTGTTTAAGGTCTGCCACGAGGAA
GCTAGCGCTGGTGATCTGCTCCCCCGCAGCGGGAACCGACCAATCTCACA
ATGCGCATCCCATGCCAAGCCGAACCAGCAGCGCCACATACAGCTGTCAA
TGCTCACGCCCGCCCGCCCCCCCGCTCCGCTCCCTTCGGTCGCGCACCTC
GGGTTGGGCAGGAGGATTGACAAGAGCCACAGGGCGGGGGGAGGCACCTG
CCAAGCTCGCCGAGCAAATCGTGCAGGCCATCAGTGCTCTTCACCTGCCG
GAAGAGGGGGGGAAGTTCGGAGAAGACGGGGAGGGGTGCGAGCTGTGCTG
CGGCGGGGCCGGTGCGGGCGGCGGCGCCTGCGGGGGCGACGACGCGCTCG
CCTTGTCGTCG
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Coding sequence (CDS) from alignment at S-firma_F_contig10218:2135..2895-

>mRNA_S-firma_F_contig10218.339.1 ID=mRNA_S-firma_F_contig10218.339.1|Name=mRNA_S-firma_F_contig10218.339.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=810bp|location=Sequence derived from alignment at S-firma_F_contig10218:2135..2895- (Sphaerotrichia firma ET2_F female)
GGGGAAGTGCTGGTGCCCGGGCTGTGGAGTCGAGCGGTGAAGGCGGTGAT
GTTTCCACCCGGCGCAGATGGTGGCAGCGGCGGCGGGGGAGCGGGTGGCG
CGGTCGTTTCTGACAGGTTTAGGGCCGTCTGCTTGGGCGAGGGAGGCGGT
AGCGGCGCCGGCGGCAACAGCGGCGACGGCGTCCAAGAGGGGGGACGTTG
TAGTGGGGGAAGTGCTGGTGCCCGGGCTGTGGAGTCGAGCGGTGAAGGCG
GTGATGTTTCCACCCGGCGCAGATGGTGGCAGCGGCGGCGGGGGAGCGGG
TGGCGCGGTCGTTTCTGACAGGTTTAGGGCCGTCTGCTTGGGCGAGGGAG
GCGGTAGCGGCGCCGGCGGCAACAGCGGCGACGGCGTCCAAGAGGGGGGA
CGTTGTAGTGGAGGATTGACAAGAGCCACAGGGCGGGGGGAGGCACCTGC
CAAGCTCGCCGAGCAAATCGTGCAGGCCATCAGTGCTCTTCACCTGCCGG
AAGAGGGGGGGAAGTTCGGAGAAGACGGGGAGGGGTGCGAGCTGTGCTGC
GGCGGGGCCGGTGCGGGCGGCGGCGCCTGCGGGGGCGACGACGCGCTCGC
CTTGTCGTCGGAGGATTGACAAGAGCCACAGGGCGGGGGGAGGCACCTGC
CAAGCTCGCCGAGCAAATCGTGCAGGCCATCAGTGCTCTTCACCTGCCGG
AAGAGGGGGGGAAGTTCGGAGAAGACGGGGAGGGGTGCGAGCTGTGCTGC
GGCGGGGCCGGTGCGGGCGGCGGCGCCTGCGGGGGCGACGACGCGCTCGC
CTTGTCGTCG
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