mRNA_S-firma_F_contig1021.333.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig1021.333.1 vs. uniprot
Match: D7FYV2_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV2_ECTSI) HSP 1 Score: 790 bits (2040), Expect = 1.310e-252 Identity = 481/722 (66.62%), Postives = 523/722 (72.44%), Query Frame = 2
Query: 2 GCSEMSLMAPLAKPMVPQPHGSVMSLARSSSLEGSTISDHLRSEGPGADRRDGG----------TGQTRARHVRKRSEGSGFDTASRWTDISREEKGKWLIQEYGKVLSDKKEDSSAQARPRATADAARHGGRRGDVSEVSVGAAGVGPVSEDDLSRSPYPAGARGRRXXXX-HRSTLSRTMGGASKSPPPREEDHTGENPGRLASFAGPE-HAS-YSDSGSPERARQSSLQADVVSK--GRPSRMSRLRNPWT-RTRHSSPSGDGR----TSASAAMSVVPEGMGETYSGHGGGVEVHETPQRRRTAKSGVAPMVVDILTD-TGAPASHRHSRSMSVSLEAVGRAVLFSGLGKEVTQAVANARQIAANRERMGGPEATRPTQLSMNEFGMLAEVITEADGQEETLEGGSGGAGQTYNPLAG-TGNGXXXXXXGPAGGQYRYHGTPQEGVRSSTA-GDVPHDQSEERGSHIRDRPPAEHRTRRISVGTLLGKSHHPQTRTRDRIDSQSTVPEGSHAGEASSMPG-SIGSNNTGGSVGHSGSAVAVGGTAVYSYGAGGADGGGGSG--------------WRRRNFVGSAGAAARAGYGFVVTTDLEPGIGGDRRALWTCFCSFKTRRKSYKMGRLTLHDLHEQNLEAMQSVVDLGRQLGRPIFTSLWSSRADRPNVGASG-PASRGSPAIGDN-------RRPFSSRPGSLLDVGSAIGGDS 2029
G SEMSLMAPLAKPMVPQ H SVMSLARSSSLEGSTISDHLRSEGPGAD GG GQ R RH RKRSEGSGFD ASRWTDISREEKGKWLIQEYGKVLSDKKE+S Q R + AD RH RRG+V +V+VG VGPVSEDDLSRSPYPAGARGRR HR+TLSRTMGG S+SPPPREED GEN R A+ A P HA+ +SDSGSPER R Q +VV K GRPSRMSRLRNPWT R RHSSPSGDG S SAAMSVV E GET G+ EV ETPQRRR +SGV P+VVD+L D TG PA+HRH+RSMS SLEAVGRAV FSGLGKEVT AVANARQ+AANRERMGG E R +LSMNEFGMLAEVI E GQE + + +GG GQ YNPL G G+G G G YRYHGT QEG RSS GDVP +Q+EER S IR++ AE++ RRISVGTLLGK+HHPQTR RDR+DSQS EGS++GEASSMPG +IG N+ WR+RNFVG G+AARAGYGFVVT DLEPG+ GDRRALWTCFCSFKTRRKSYKMGRL LHDLHE+NLEAMQSVVDLGRQLGRPIFTSLWSSRADRPNVG+S P SRGSP + DN RR F+SRPGSL DVGSAIGGDS
Sbjct: 2933 GFSEMSLMAPLAKPMVPQSHSSVMSLARSSSLEGSTISDHLRSEGPGADTWTGGXXXXXXXXXXAGQARPRHERKRSEGSGFDVASRWTDISREEKGKWLIQEYGKVLSDKKEESGTQGRAKGAADGGRHPSRRGEVPDVNVG---VGPVSEDDLSRSPYPAGARGRRSSRSIHRATLSRTMGGTSRSPPPREEDPPGENRARSATVATPAGHATCHSDSGSPERPRP---QQEVVPKSVGRPSRMSRLRNPWTSRARHSSPSGDGNGKAAVSGSAAMSVVREDKGETRVGNWSVPEVDETPQRRRATRSGVVPVVVDVLMDPTGIPANHRHTRSMSTSLEAVGRAVQFSGLGKEVTDAVANARQLAANRERMGGAEGPRSAKLSMNEFGMLAEVINEVGGQEGSFDIATGGTGQGYNPLGGGAGSGGPA---GAGGAPYRYHGTAQEGTRSSGGTGDVPQEQAEERSSSIREKHSAEYKPRRISVGTLLGKTHHPQTRPRDRMDSQSVGTEGSYSGEASSMPGGNIGGNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWRQRNFVGLGGSAARAGYGFVVTMDLEPGMSGDRRALWTCFCSFKTRRKSYKMGRLNLHDLHERNLEAMQSVVDLGRQLGRPIFTSLWSSRADRPNVGSSAAPGSRGSPGVSDNTNSNNSNRRVFASRPGSLFDVGSAIGGDS 3645
BLAST of mRNA_S-firma_F_contig1021.333.1 vs. uniprot
Match: A0A6H5KJE7_9PHAE (DENN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJE7_9PHAE) HSP 1 Score: 773 bits (1997), Expect = 5.740e-247 Identity = 476/739 (64.41%), Postives = 527/739 (71.31%), Query Frame = 2
Query: 2 GCSEMSLMAPLAKPMVPQPHGSVMSLARSSSLEGSTISDHLRSEGPGAD--------RRDGG-TGQTRARHVRKRSEGSGFDTASRWTDISREEKGKWLIQEYGKVLSDKKEDSSAQARPRATADAARHGGRRGDVSEVSVGAAGVGPVSEDDLSRSPYPAGARGRRXXXX-HRSTLSRTMGGASKS---PPPREEDHTGENPGRLASFAGP-EHA-SYSDSGSPERARQSSLQADVVSK--GRPSRMSRLRNPWT-RTRHSSPSGDGR----TSASAAMSVVPEGMGETYSGHGGGVEVHETPQRRRTAKSGVAPMVVDILTD-TGAPASHRHSRSMSVSLEAVGRAVLFSGLGKEVTQAVANARQIAANRERMGGPEATRPTQLSMNEFGMLAEVITEADGQEETLEGGSGGAGQ--TYNPLAGTGN----GXXXXXXGPAGGQYRYHGTPQEGVRSSTAGDVPHDQSEERGSHIRDRPPAEHRTRRISVGTLLGKSHHPQTRTRDRIDSQSTVPEGSHAGEASSMPG-SIGSNNTGGSVGHSGSAVAVGGTAVYSYGAGGADGGGGSG--------------------------WRRRNFVGSAGAAARAGYGFVVTTDLEPGIGGDRRALWTCFCSFKTRRKSYKMGRLTLHDLHEQNLEAMQSVVDLGRQLGRPIFTSLWSSRADRPNVGASG-PASRGSPAIGDN-------RRPFSSRPGSLLDVGSAIGGD 2026
G SEMSLMAPLAKPMVPQ H SVMSLARSSSLEGSTISDHLRSEGPGAD RRDGG GQ R RH RKRSEGSGF+ ASRWTDISREEKGKWLIQEYGKVLSDKKE+S Q R R AD RH RRG+V +V+VG VGPVSEDDLSRSPYPAGARGRR HR+TLSRTMGG S+ PP REED G+N R A+ A P +HA S+SDSGSP+R R+ Q +VV K GRPSRMSRLRNPWT RTRHSSPSGDG S SAAMSVV E GET G+ EV+ETPQRRR +SGV P+VVD+L D G P +HRH+RSMS SLEAVGRAV FSGLGKEVT AVANARQ+AA RERMGG + R +LSMNEFGML EVITE GQE + + +GG GQ T + + G G G G + R + R++ GD+P +Q+EER S IR+R AEH+ RRISVGTLLGK+HHPQTR RDRIDSQS EGS++GEASSMPG +IG N TGGS GH G+A G A Y Y +G WR+RNFVG G+AARAGYGFVVT DLEPG+ G+RRALWTCFCSFKTRRKSYKMGRL LHDLHE+NLEAMQ VVDLGRQLGRPIFTSLWSSRADRPNVG+S P SRGSP DN RR F+SRPGSL DVGSAIGGD
Sbjct: 2557 GFSEMSLMAPLAKPMVPQSHSSVMSLARSSSLEGSTISDHLRSEGPGADTWAGGGGNRRDGGGAGQARPRHERKRSEGSGFEWASRWTDISREEKGKWLIQEYGKVLSDKKEESGTQGRARGAADGGRHPSRRGEVPDVNVG---VGPVSEDDLSRSPYPAGARGRRSSRNIHRTTLSRTMGGTSRRRFRPPSREEDPPGDNRARSATVATPADHATSHSDSGSPDRPRR---QQEVVPKSVGRPSRMSRLRNPWTSRTRHSSPSGDGNGKASVSGSAAMSVVREDKGETRVGNWSTPEVYETPQRRRATRSGVVPVVVDVLMDPAGIPVTHRHTRSMSSSLEAVGRAVHFSGLGKEVTDAVANARQLAATRERMGGADGPRSAKLSMNEFGMLTEVITEVGGQEGSFDIATGGTGQGGTISWVRGGGRVAPQERAALRTGTMGRRKR-----ELARRANGTGDIPQEQTEERSSSIRERHSAEHKPRRISVGTLLGKTHHPQTRPRDRIDSQSVGTEGSYSGEASSMPGGNIGGNGTGGSXGHPGAAATTGXXAAYGY----------AGXXXXXXXXXXXXXXXXXXXXXXXXXXWRQRNFVGLGGSAARAGYGFVVTMDLEPGMSGNRRALWTCFCSFKTRRKSYKMGRLNLHDLHERNLEAMQRVVDLGRQLGRPIFTSLWSSRADRPNVGSSAAPGSRGSPGASDNINSNNSNRRVFASRPGSLFDVGSAIGGD 3274 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1021.333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1021.333.1 >prot_S-firma_F_contig1021.333.1 ID=prot_S-firma_F_contig1021.333.1|Name=mRNA_S-firma_F_contig1021.333.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=724bp MSLMAPLAKPMVPQPHGSVMSLARSSSLEGSTISDHLRSEGPGADRRDGGback to top mRNA from alignment at S-firma_F_contig1021:16033..25281- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig1021.333.1 ID=mRNA_S-firma_F_contig1021.333.1|Name=mRNA_S-firma_F_contig1021.333.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=9249bp|location=Sequence derived from alignment at S-firma_F_contig1021:16033..25281- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig1021:16033..25281- >mRNA_S-firma_F_contig1021.333.1 ID=mRNA_S-firma_F_contig1021.333.1|Name=mRNA_S-firma_F_contig1021.333.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=4344bp|location=Sequence derived from alignment at S-firma_F_contig1021:16033..25281- (Sphaerotrichia firma ET2_F female)back to top |