mRNA_S-firma_F_contig1021.330.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig1021.330.1 vs. uniprot
Match: D7FYV6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV6_ECTSI) HSP 1 Score: 587 bits (1512), Expect = 7.820e-188 Identity = 397/731 (54.31%), Postives = 462/731 (63.20%), Query Frame = 1
Query: 244 VEREQRELETKYARERAVEEPLGQASVSPAKPMVPEFPVKKAAAATAMKSPRPNKTPREVEVSSDGDTNMLFFLVYLGDRRGILCVKDQRTTRWTECRHASVAHSQSASTTNVAADDPCPH--PASLRDLPPTREMISIEKLRGELWKQKQLTEVLRHEVGQQESEKRKLLDITRYAKESEAAALRAAYERRAYQHMSARELGKTGSVAAGTELWRVPPPSMMEGADGEGGGSSPKALRRTEVPRPSNGKHGGDNRIELEDTAEDRLLLAGLRRIGDQDQTPRRGSGPTSPRKDDLGGDSTFREQVPGVRAWSSGVASNSGGGGGNKDLLSHYDPLSPGGIRAETRYVFPDGSVRRRVETPRASGRAATGSGG---VAMPLVGTSRVASADLSLALGIDALSGGDAHAGARDRGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGGND---GAYRGPGAAPGAEWAPEGRPPRAYVPFLNLPATSGSKXXXXXXXXXXXXXXXXXXXGSVSDRS-APSLLPSVYSSAEKRRNPHRGRPLAGVGGVPISPGRSMLTGPSRHGTGASSSTRQTFVDTDSDNGRLWRPR---RRLGGGGGNSPIGDEELSDGGDSVGSGSTDVEFLRRRAEAKLRSLDRQEAAELEAAEDELDLLVSSSAQR-TGGVTAARAPTRQSQAGDGRSTATPTNKYARRTFSTASSSSNKSFMYSGRKKRPGTNQSESSMLGDSRWA 2397
VEREQ+ELE KYARERA EEPL QAS +PA V EFP KK +SPRP K+PRE+EV+ + + G RG ++ Q ++ V S+ + V +D P PH PAS R L RE +SIEKLR ELWKQKQLTEVLRHEVGQQE+EKRKL+DI R AKESEAAALRAAYERRA +H A+ELG G A G ELWRVPPP EGA+GEG SP A RR E + + + + + ++TAEDRLLLAGLRR+ D ++ P G RKDDLGGDSTFREQVPG RAWSSG SNS G +K Y +SPGGIRAE+RYVFPDGSVRRR+ETP A G V MPLVGTSR+ASADLS ALGID+L GG A D G D G +RGPGAAPGAEWAP GRPPRA+VPFLNLP ++G SD S +P LP VYS+A R+ RGRPLAG+GGV +SPGR+MLTGP R GTGA+S R + +T S + R + R RR G G++ IGDEE SD +SVGSGSTDVEFLRRRAEAKL+SLDR+EAAE +A E EL+LLV+SS R T VT AP S+A G A PT+ ARRT S ASSSS++S MYS RKKRPGTN+SESSMLGDSRWA
Sbjct: 818 VEREQKELERKYARERAAEEPLVQASSNPANLPVSEFPTKKGG---GTRSPRPIKSPRELEVNEKRHEDSVMMPHLPGRERGTPSIEAQ-----SDNGEQMVEPSKIETKGPVQSDGPSPHQPPASPRGLATPREGVSIEKLRTELWKQKQLTEVLRHEVGQQEAEKRKLIDIARVAKESEAAALRAAYERRASKHPPAKELGIAGGGAEGNELWRVPPPPSTEGAEGEGRTPSPSARRRAESNFAAKNAYVANRKFDTDETAEDRLLLAGLRRLSDGNRAPGGGCDTDRLRKDDLGGDSTFREQVPGARAWSSGAVSNSRDGRDSKRRPLDYGAVSPGGIRAESRYVFPDGSVRRRLETPAAEGGVGDXXXXXXXVPMPLVGTSRIASADLSFALGIDSLRGGGNGAAGDD-------------------VEKASWRRRGTGRTGSRDNEGGEHRGPGAAPGAEWAPVGRPPRAFVPFLNLPVSNGKANGNNSKEGRWASRD--------SDGSDSPYFLPPVYSAAVNGRSKRRGRPLAGIGGVLVSPGRAMLTGPGRPGTGATSPERPAYGETGSGHHRRRQSRQRARREGADLGSTSIGDEEFSDDCESVGSGSTDVEFLRRRAEAKLKSLDRREAAE-KAKEKELNLLVASSPARGTTDVTTPEAPAMHSRAVGGVRLALPTHNTARRTISAASSSSSRSLMYSRRKKRPGTNKSESSMLGDSRWA 1512
BLAST of mRNA_S-firma_F_contig1021.330.1 vs. uniprot
Match: A0A6H5KLL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLL2_9PHAE) HSP 1 Score: 531 bits (1368), Expect = 2.400e-166 Identity = 380/755 (50.33%), Postives = 449/755 (59.47%), Query Frame = 1
Query: 271 TKYARERAVEEPLGQASVSPAKPMVPEFPVKKAAAATAMKSPRPNKTPREVEVSS---DGDTNMLFFLVYLGDRRGILCVKDQRTTRWTECRHASVAHSQSASTTNVAADDPCPH--PASLRDLPPTREMISIEKLRGELWKQKQLTEVLRHEVGQQESEKRKLLDITRYAKESEAAALRAAYERRAYQHMSARELGKTGSVAAGTELWRVPPPSMMEGADGEGGGSSPKALRRTEVPRPSNGKHGGDNRIELEDTAEDRLLLAGLRRIGDQDQTPRRGSGPTSPRKDDLGGDSTFREQVPGVRAWSSGVASNSGGGGGNKDLLSHYDPLSPGGIRAETRYVFPDGSVRRRVETPRASGRAATGSGG--VAMPLVGTSRVASADLSLALGIDALSGGDAHAGARDRGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGGNDGAYRGPGAAPGAEWAPEGRPPRAYVPFLNLPATSGSKXXXXXXXXXXXXXXXXXXXGSVSDRS-APSLLPSVYSSAEKRRNPHRGRPLAGVGGVPISPGRSMLTGPSRHGTGASSSTRQTFVDTDSDNGRLWRPRRRLGGGG---GNSPIGDEELSDGGDSVGSGSTDVEFLRRRAEAKLRSLDRQEAAE--------LEA--------------------------AEDELDLLVSSSAQR-TGGVTAARAPTRQSQAGDGRSTATPTNKYARRTFSTASSSSNKSFMYSGRKKRPGTNQSESSMLGDSRWA 2397
++YARERA EEPL QAS + A V EFP KK +SPRP +PRE+EV+ +G M L G RG ++ Q T+ S+ + V D P PH PAS R L RE +SIEKLR ELWKQKQLTEVLRHEVGQQE+EKRKL+DI R AKESEAAALRAAYERRA +H A+ELG G A G ELWRVPPP +EG +GEG SP RR E R + + ++++++TAEDRLLLAGLRR+GD ++ P G G + R + GGDSTFREQVPG AWSSG AS+ G +K Y +SPGGIRAE+RYVFPDGSVR+R+ETP A G V MPLVGTSR+ASADLS ALGID+L GG + A D G G +RGPGAAPGAEWAP GRPPRA+VPFLNLP +G SD S +PS LP VYS+A R+ RGRPLAG+GGV +SPGR+MLTGP R GTGA+S R + + S + R + RRR G + IGDEE SD DSVGSGSTDVEFLRRRAEAKL+SLDRQEAA +EA AE+EL+LLV+SS R T T AP S+A G A PT+ ARR S ASSSS++S MYS +KKRPGTN+SESSMLG+SRWA
Sbjct: 855 SRYARERAAEEPLVQASSNLADLPVSEFPTKKGG---GTRSPRPINSPRELEVNEKRHEGSVMMPHLLP--GRERGTPSIEAQ-----TDNGEQMAEPSKIKTKGPVQRDGPSPHQPPASSRGLATPREGVSIEKLRTELWKQKQLTEVLRHEVGQQEAEKRKLIDIARVAKESEAAALRAAYERRASKHPPAKELGIAGGAAEGNELWRVPPPPAVEGVEGEGRTPSPSDRRRAESTRAAKNACVANRKLDMDETAEDRLLLAGLRRLGDGNRAP--GGGCDTDRLRN-GGDSTFREQVPGALAWSSGAASSGRDGRDSKGRPLDYGAVSPGGIRAESRYVFPDGSVRQRLETPAAEGGVGXXXXXXXVPMPLVGTSRIASADLSFALGIDSLRGGGSGAAGDD----------------VEKASGRRRSTGRTGSRGNEGGEHRGPGAAPGAEWAPVGRPPRAFVPFLNLPVLNGKASGNTSKERRWASRG--------SDGSDSPSFLPPVYSAAVNGRSKRRGRPLAGIGGVLVSPGRAMLTGPGRPGTGATSPERPAYGEAGSVHHRRRQSRRRARREGVDRDSISIGDEEFSDDCDSVGSGSTDVEFLRRRAEAKLQSLDRQEAAVKAKGNTFIMEAQCAFRFLALALLARKTNVSPSAPPVQAEEELNLLVASSPARGTTDATTPEAPALHSRAVGGVRAAAPTHNTARRMISAASSSSSRSLMYSRQKKRPGTNKSESSMLGESRWA 1572 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1021.330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1021.330.1 >prot_S-firma_F_contig1021.330.1 ID=prot_S-firma_F_contig1021.330.1|Name=mRNA_S-firma_F_contig1021.330.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=805bp MQTRRDIERAQQELDERKEEMRLQKEREQLHKRYEQEGRLAKALESEKLLback to top mRNA from alignment at S-firma_F_contig1021:859..5539+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig1021.330.1 ID=mRNA_S-firma_F_contig1021.330.1|Name=mRNA_S-firma_F_contig1021.330.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=4681bp|location=Sequence derived from alignment at S-firma_F_contig1021:859..5539+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig1021:859..5539+ >mRNA_S-firma_F_contig1021.330.1 ID=mRNA_S-firma_F_contig1021.330.1|Name=mRNA_S-firma_F_contig1021.330.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=4830bp|location=Sequence derived from alignment at S-firma_F_contig1021:859..5539+ (Sphaerotrichia firma ET2_F female)back to top |