mRNA_S-firma_F_contig1020.319.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig1020.319.1 vs. uniprot
Match: D8LJK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJK8_ECTSI) HSP 1 Score: 339 bits (869), Expect = 1.050e-113 Identity = 181/305 (59.34%), Postives = 213/305 (69.84%), Query Frame = 1
Query: 1 VYSCSRDTTLRQWNRSGSSALRVFEGHDMACTALALSADERTLASGSRDTSVRTWDVQTGQCTASAKIPRNLVTCLKYLSAESSASVVQGGEDLRLRVWDVRQAGLRPSLTIEGYTFFPLCVDVSAYGHEVLTSCKGFSGTGCETKLWDLRNTGAPVREYTGHAQDTTSCVFLETQRGVVDEEGRIDDG----DSGWDVPASVSYR-MVATASKDETIKIYDRDSGDTVVDHAELGCGGFTGLACQHDPGSGLPVLCASTITGGLYVFQLGQTRVVESAG------GAEGWRLRCVGFVRGTAIL 882
+YSCSRDTT+RQWNRSG SALRVFEGHD+ACTA+ALS DE+TL SGS WDVQTGQCT+SAK+PRNLVTCLK LS S+SVVQ GLR S+T++GYTFFPL +DVS+ GH+VLTSCKGF+G GCETKLWDLR+ G PVREYTGH QDTT+CVF+ ++ G G + G + W ++ S R M+ATASKD T+KIYD G +VDH E CGG+TGLA Q D +G PV ASTITGGLY +L + V +AG G G RLRCVGFVRG IL
Sbjct: 1 MYSCSRDTTVRQWNRSGISALRVFEGHDLACTAIALSEDEKTLYSGSXXXXXXAWDVQTGQCTSSAKVPRNLVTCLKCLSGGPSSSVVQXXXXXXXXXXXXXXXGLRSSMTVDGYTFFPLFLDVSSDGHQVLTSCKGFNGAGCETKLWDLRSPGIPVREYTGHTQDTTACVFVTSKEGGDGGSGAREGGYGLSPAPWPSLSAPSSRGMIATASKDGTVKIYDLADGSILVDHVEPECGGYTGLAIQRDSRTGGPVFYASTITGGLYALRLEEK--VATAGTSRTGLGEGGLRLRCVGFVRGNPIL 303
BLAST of mRNA_S-firma_F_contig1020.319.1 vs. uniprot
Match: A0A6H5JBE9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE9_9PHAE) HSP 1 Score: 311 bits (797), Expect = 1.120e-102 Identity = 174/337 (51.63%), Postives = 203/337 (60.24%), Query Frame = 1
Query: 1 VYSCSRDTTLRQWNRSGSSALRVFEGHDMACTALALSA----------------------------------DERTLASGSRDTSVRTWDVQTGQCTASAKIPRNLVTCLKYLSAESSASVVQGGEDLRLRVWDVRQAGLRPSLTIEGYTFFPLCVDVSAYGHEVLTSCKGFSGTGCETKLWDLRNTGAPVREYTGHAQDTTSCVFLETQRGVVDEEGRIDDG-----DSGWDVPASVSYRMVATASKDETIKIYDRDSGDTVVDHAELGCGGFTGLACQHDPGSGLPVLCASTITGGLYVFQLGQTRVVESAGGAE----GWRLRCVGFVRGTAIL 882
+YSCSRDTT+RQWNRSG SALRVFEGHD+ACTA+ALS DE+ L SGSRDTS+R WDVQTGQC +SAK+PRNLVTCLK LS E S+SV QGGEDL+LRVWD R+ GLRPS+TI+GYTFFP LWDLR+ G PVREYTGH QDTT+CVF+ ++ G D G ++G + A S M+ATASKD T+KIYD G +VDH E CGG+TGLA Q D +G PV ASTITGGLY +L + + E G RLRCVGFVRG IL
Sbjct: 1 MYSCSRDTTVRQWNRSGISALRVFEGHDLACTAIALSEGDVPSQRKILPARQSILSKLFHDDDPPPYEHSLEDEKALYSGSRDTSIRAWDVQTGQCISSAKVPRNLVTCLKCLSGELSSSVAQGGEDLKLRVWDAREGGLRPSMTIDGYTFFP---------------------------LWDLRSPGIPVREYTGHTQDTTACVFVTSKEGGDDGSGVEENGYGVSPSPSTSLSAPSSRGMIATASKDGTVKIYDLADGSILVDHVEPECGGYTGLAIQRDSRTGAPVFYASTITGGLYALRLEEEVATAAQSQTELQEGGLRLRCVGFVRGNPIL 310
BLAST of mRNA_S-firma_F_contig1020.319.1 vs. uniprot
Match: A0A835ZHR6_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHR6_9STRA) HSP 1 Score: 207 bits (528), Expect = 1.040e-62 Identity = 124/270 (45.93%), Postives = 153/270 (56.67%), Query Frame = 1
Query: 1 VYSCSRDTTLRQWNRSGSSALRVFEGHDMACTALALSADERTLASGSRDTSVRTWDVQTGQCTASAKIPRNLVTCLKYLSAESSASVV-QGGEDLRLRVWDVRQAGLRPSLTIEGYTFFPLCVDVSAYGHEVLTSCKGFSGTGCETKLWDLRNTGAPVREYTGHAQDTTSCVFLETQRGVVDEEGRIDDGDSGWDVPASVSYRMVATASKDETIK--IYDRDSGDTVVDHAELGCGGFTGLACQHDPGSGLPVLCASTITGGLYVFQLGQ 801
YS SRDTTL QW + G L + GH + +AL LSADE L SGSRDTSVR WDV TGQ PRNLVTCLK + E +VV QGGEDL+LR+WD R P+ T++G+ +FPLC+DVS G+ +LT KGF+ GCE +LWD R TG V+EY GHAQD T+C+ A+ S V TASKD+TIK ++ R+SG + D AE H LCA+T TGGLY QL +
Sbjct: 6 AYSASRDTTLAQWGQ-GEGPLATYRGHTLTVSALDLSADETHLWSGSRDTSVRLWDVSTGQQRGMVATPRNLVTCLKCMPGEEGTNVVVQGGEDLKLRLWDFRTPSSVPAQTLDGFVYFPLCLDVSEDGNYLLTGSKGFNSVGCEGRLWD-RRTGQVVQEYNGHAQDVTACLLAPAAL-------------------AASSGGAVITASKDQTIKARVWGRESGQLLSDFAE-----------PHR-------LCAATFTGGLYDLQLSE 236
BLAST of mRNA_S-firma_F_contig1020.319.1 vs. uniprot
Match: K3WSF6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSF6_GLOUD) HSP 1 Score: 163 bits (413), Expect = 2.070e-44 Identity = 98/250 (39.20%), Postives = 138/250 (55.20%), Query Frame = 1
Query: 1 VYSCSRDTTLRQWNR------SGSSALR------VFEGHDMACTALALSADERTLASGSRDTSVRTWDVQTGQCTASAKIPRNLVTCLKYLSAESSASVVQGGEDLRLRVWDVRQAGLRPSLTIEGYTFFPLCVDVSAYGHEVLTSCKGFSGTGCETKLWDLRNTGAPVREYTGHAQDTTSCVFLETQRGVVDEEGRIDDGDSGWDVPASVSYRMVATASKDETIKIYDRDSGDTVVDHAELGCGGFTGL 714
+YSCSRDTT+ + S SS+ R GH + + +A++ DE +L SG RDT WD+ TG+ A +N++TC K++ E VVQG EDL L++WD R P+ + GY +F LCVDVS G+ LTS KGF+G GCE ++WD R TG + E+ GH QDTTSC FL + G + DS V AS + + TASKD ++K++D + + + E G FT +
Sbjct: 79 IYSCSRDTTIALTSHIASKSSSPSSSSRKQPQPVYLRGHHLNVSTIAVNDDETSLCSGGRDTQTIFWDLTTGRLKAKNTTSQNVITCSKWVPVEPL--VVQGSEDLTLKLWDERTNLRAPAQSFHGYVYFALCVDVSPDGNYFLTSSKGFNGVGCEVRIWD-RRTGKQLYEFNGHQQDTTSCCFLPSATGSSSNDSVTSPADS---VRAS-AIPIPVTASKDGSVKVWDAATSSVLCEALEPSGGMFTSI 321
BLAST of mRNA_S-firma_F_contig1020.319.1 vs. uniprot
Match: A0A485KVW2_9STRA (Aste57867_12386 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KVW2_9STRA) HSP 1 Score: 164 bits (414), Expect = 2.750e-44 Identity = 99/253 (39.13%), Postives = 138/253 (54.55%), Query Frame = 1
Query: 1 VYSCSRDTTLRQWNRSGSSALRV-------------FEGHDMACTALALSADERTLASGSRDTSVRTWDVQTGQCTASAKIPRNLVTCLKYLSAESSASVVQGGEDLRLRVWDVRQAGLRPSLTIEGYTFFPLCVDVSAYGHEVLTSCKGFSGTGCETKLWDLRNTGAPVREYTGHAQDTTSCVFLETQRGVVDEEGRIDDGDSGWDVPASVSYRMVATASKDETIKIYDRDSGDTVVDHAELGCGGFTGLAC 720
+YSCSRDTT+ + + GS A + GH + +ALA++ E TLASGSRDT V WDV T +N+VTC+ ++ +++ V QGGEDLR+R+WD R A P+ TIEGY +FPL + S GH +LTS KGF+ GCE ++WD R TG V E GHAQD T+C ++ GR +G TASKD +I+++D +GD + + G FT ++C
Sbjct: 117 LYSCSRDTTIAR-HTFGSLANDPTTPSPTAVTTHPPYHGHTLTVSALAINESESTLASGSRDTGVSLWDVATSMRRQHTITSQNIVTCMAWVPRDANV-VAQGGEDLRVRLWDAR-AWKAPTQTIEGYIYFPLSIACSDDGHYLLTSSKGFNAVGCEGRVWD-RRTGKQVAEMRGHAQDATACAYIP---------GRNHEG---------------ITASKDSSIRVWDTTTGDLLASTQDANAGMFTSVSC 341
BLAST of mRNA_S-firma_F_contig1020.319.1 vs. uniprot
Match: UPI00109BE923 (WD repeat-containing protein 31 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BE923) HSP 1 Score: 159 bits (401), Expect = 1.010e-43 Identity = 95/267 (35.58%), Postives = 136/267 (50.94%), Query Frame = 1
Query: 1 VYSCSRDTTLRQWNRSG--SSALRVFEGHDMACTALALSADERTLASGSRDTSVRTWDVQTGQCTASAKIPRNLVTCLKYLSAESSASVVQGGEDLRLRVWDVRQAGLRPSLTIEGYTFFPLCVDVSAYGHEVLTSCKGFSGTGCETKLWDLRNTGAPVREYTGHAQDTTSCVFLETQRGVVDEEGRIDDGDSGWDVPASVSYRMVATASKDETIKIYDRDSGDTVVDHAELGCGGFTGLACQHDPGSGLPVLCASTITGGLYVFQL 795
VYS SRD T++ W + +EGH + T + L+ D+ L SGSRD SVR WDV TGQC + ++ RNLV+C+K++ S VVQ GED ++VWD R L P+ T +F C D S G +LT GF+ +GCE LWDLR V +Y GH Q ++C+FL G+ + ++ATAS D T++I+ R++ + ++ G G T L + G LC S+ G+Y L
Sbjct: 3 VYSSSRDKTIKLWKIGDCHQDPIDTYEGHKLVVTGIDLNNDQTVLFSGSRDNSVRLWDVVTGQCISHNEVTRNLVSCVKWIP--QSHEVVQTGEDKMVKVWDTRT--LTPAFTFPPKQYFQTCCDCSDDGKYILTCNNGFNRSGCEATLWDLRQK-KQVYQYVGHTQTASACIFLPFTEGIA-------------------PHPLIATASHDSTLRIWKRETKECILVEEFPGSGPLTSLTAWPNGG-----LCVSSFHVGIYKLNL 240
BLAST of mRNA_S-firma_F_contig1020.319.1 vs. uniprot
Match: A0A1V9Z8M6_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z8M6_9STRA) HSP 1 Score: 157 bits (397), Expect = 5.820e-42 Identity = 99/281 (35.23%), Postives = 143/281 (50.89%), Query Frame = 1
Query: 1 VYSCSRDTTLRQWNRSGSSALRV-----FEGHDMACTALALSADERTLASGSRDTSVRTWDVQTGQCTASAKIPRNLVTCLKYLSAESSASVVQGGEDLRLRVWDVRQAGLRPSLTIEGYTFFPLCVDVSAYGHEVLTSCKG-------------FSGTGCETKLWDLRNTGAPVREYTGHAQDTTSCVFLETQRGVVDEEGRIDDGDSGWDVPASVSYRMVATASKDETIKIYDRDSGDTVVDHAELGCGGFTGLACQHDPGSGLPVLCASTITGGLYVF 789
+Y+CSRDTT+ ++ A+ F GH ++ +A+ ++ E LASGSRDTSV WDV T +N+VTC+ ++ + V QGGEDLR+R+WD R A P TIEGY +FPL +DVS G+ +LTS KG F+G GCE ++WD R TG V E GH QD T+C +++ + V TASKD ++++++ SG V + G FT L +G+ + S+ TG L V+
Sbjct: 97 LYACSRDTTISRYRLDFDGAVNTVKMESFAGHSLSVSAITINGSETQLASGSRDTSVSLWDVATTTQLQHTTTSQNIVTCMAWVPIHDTL-VAQGGEDLRVRIWDSR-AWKSPVQTIEGYVYFPLSLDVSDDGNYILTSSKGTILSWICWLMPLGFNGVGCEGRVWD-RRTGKQVCEMAGHLQDATACSYIKQRN------------------------EYVLTASKDSSLRVWNSASGALVSSTYDHALGMFTALTSLPPDDAGIVRIFTSSFTGHLAVY 350
BLAST of mRNA_S-firma_F_contig1020.319.1 vs. uniprot
Match: G1MSN0_MELGA (WD repeat domain 31 n=6 Tax=Galliformes TaxID=8976 RepID=G1MSN0_MELGA) HSP 1 Score: 153 bits (387), Expect = 6.210e-41 Identity = 104/273 (38.10%), Postives = 138/273 (50.55%), Query Frame = 1
Query: 4 YSCSRDTTLRQWNRSGSSALR-VFEGHDMACTALALSADERTLASGSRDTSVRTWDVQTGQCTASAKIPRNLVTCLKYLSAESSASVVQGGEDLRLRVWDVRQAGLRPSLTIEGYTFFPLCVDVSAYGHEVLTSCKGFSGTGCETKLWDLRNTGAPVREYTGHAQDTTSCVFLETQRGVVDEEGRIDDGDSGWDVPASVSYRMVATASKDETIKIYDRDSGDTVVDHAELGCGGFTGLA-CQHDPGSGLPVLCASTITGGLYVFQLGQTRVVE 816
+S SRD T+ W G+S R F GH++ T LA+S D L +GSRD +VR WDV+TG+C A + RNLVT L ++ E V+Q ED +R+WD R+ L+ + T G DVS G ++S GF+G GCE LWDLR T + V EY GH Q T SCVFL RG PA +AT+S D +K++DRD+ + G G LA C +LCAS G++V QL +E
Sbjct: 71 FSASRDRTVMMWELHGTSGPRQCFPGHELVVTGLAVSPDASRLCTGSRDNTVRKWDVETGECLCRAALSRNLVTHLCWVPGEPY--VIQTSEDKTIRMWDSRE--LQVAHTFPGKQHIQTSCDVSQDGRYCVSSSSGFAGEGCEATLWDLRQTRSRVCEYRGHLQTTASCVFLP--RG-----------------PALTP--SIATSSYDSKVKVWDRDTAACLATACLEGAGPLASLAACDSST-----LLCAS-FRSGIHVLQLRHREELE 312
BLAST of mRNA_S-firma_F_contig1020.319.1 vs. uniprot
Match: UPI0009E229CA (WD repeat-containing protein 31-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E229CA) HSP 1 Score: 152 bits (384), Expect = 4.140e-40 Identity = 95/261 (36.40%), Postives = 132/261 (50.57%), Query Frame = 1
Query: 1 VYSCSRDTTLRQWNRSGSSALRVFEGHDMACTALALSADERTLASGSRDTSVRTWDVQTGQCTASAKIPRNLVTCLKYLSAESSASVVQGGEDLRLRVWDVRQAGLRPSLTIEGYTFFPLCVDVSAYGHEVLTSCKGFSGTGCETKLWDLRNTGAPVREYTGHAQDTTSCVFLETQRGVVDEEGRIDDGDSGWDVPASVSYRMVATASKDETIKIYDRDSGDTVVDHAELGCGGFTGLACQHDPGSGLPVLCASTITGGLY 783
VYS SRD T++ W++ + L FEGH + TA+ L+ D L SGSRD VR WD + ++ RNLV+C+K++ + V Q GED LRVWD R ++P T +F D S G +LT GF+G GCE+ LWD+R R Y GH Q T++C+FL V W S ++ATAS D T+KI++R+ + + G G T L C D GS +C ST G++
Sbjct: 106 VYSSSRDKTIKAWHQEKNDPLLTFEGHRLVVTAIDLNDDGTLLFSGSRDNCVRLWDTTRKTSVSEKEVSRNLVSCVKWIPG-TQTQVAQTGEDKMLRVWDTRN--MQPVFTFPAQQYFQTYCDCSRDGRFILTCSNGFNGKGCESTLWDVRAQQMICR-YIGHYQTTSACIFLPRLEHV-------------W------SKDLIATASHDSTVKIWEREGTECITTLDCAGAGPLTDL-CVWDDGS----ICISTTNMGVF 338
BLAST of mRNA_S-firma_F_contig1020.319.1 vs. uniprot
Match: A0A8K1CV93_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CV93_PYTOL) HSP 1 Score: 152 bits (385), Expect = 5.500e-40 Identity = 105/291 (36.08%), Postives = 156/291 (53.61%), Query Frame = 1
Query: 1 VYSCSRDTTLRQWNRSGS----SALRVFEGHDMACTALALSADERTLASGSRDTSVRTWDVQTGQCTASAKIPRNLVTCLKYLSAESSASVVQGGEDLRLRVWDVRQAGLRPSLTIEGYTFFPLCVDVSAYGHEVLTSCKGFSGTGCETKLWDLRNTGAPVREYTGHAQDTTSCVFLETQRGVVDE-EGRIDDGDSGWDVPASVSYRMVATASKDETIKIYDRDSGDTVVDHAELGCGG-FTGLACQHDPGSGLPVLCASTITGGL--YVFQLGQTRVVESAGGAEGWRLR 849
+YS SRDTT+ + SA +GH + +A+A+ DE +L SG RDT WD+ T + + +N++TC K++ E V+QG EDL +++WD R A P T+ GY +FPLC+DVS G +TS KGF+G G E ++WD R G + ++ GH QD ++C FL RGV+D EG ++ +P VS ASKD +IK+++ ++ + ++ A G FT LA D G+ L A+T G L YV+ Q S G ++ W R
Sbjct: 114 LYSSSRDTTIAVTTPVSAAETESASIKLQGHTLNVSAIAVDTDETSLCSGGRDTQTMFWDLTTAKIKSKNTTAQNVITCSKWVPTEHV--VLQGSEDLSVKLWDERSALRTPVQTLRGYVYFPLCLDVSRDGLYFMTSSKGFNGVGAEVRVWD-RRVGKQLLQFEGHQQDASACCFLP--RGVLDSSEGEAPVPNASNGIPTPVS------ASKDGSIKVWNVNAENQLLCEANEPSGRMFTSLASTGDDGTVL----AATFNGDLHAYVYDTKQ----RSIGLSKSWHQR 385 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1020.319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1020.319.1 >prot_S-firma_F_contig1020.319.1 ID=prot_S-firma_F_contig1020.319.1|Name=mRNA_S-firma_F_contig1020.319.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=295bp VYSCSRDTTLRQWNRSGSSALRVFEGHDMACTALALSADERTLASGSRDTback to top mRNA from alignment at S-firma_F_contig1020:22058..24231- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig1020.319.1 ID=mRNA_S-firma_F_contig1020.319.1|Name=mRNA_S-firma_F_contig1020.319.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2174bp|location=Sequence derived from alignment at S-firma_F_contig1020:22058..24231- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig1020:22058..24231- >mRNA_S-firma_F_contig1020.319.1 ID=mRNA_S-firma_F_contig1020.319.1|Name=mRNA_S-firma_F_contig1020.319.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1770bp|location=Sequence derived from alignment at S-firma_F_contig1020:22058..24231- (Sphaerotrichia firma ET2_F female)back to top |