mRNA_S-firma_F_contig1020.319.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1020.319.1
Unique NamemRNA_S-firma_F_contig1020.319.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig1020.319.1 vs. uniprot
Match: D8LJK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJK8_ECTSI)

HSP 1 Score: 339 bits (869), Expect = 1.050e-113
Identity = 181/305 (59.34%), Postives = 213/305 (69.84%), Query Frame = 1
Query:    1 VYSCSRDTTLRQWNRSGSSALRVFEGHDMACTALALSADERTLASGSRDTSVRTWDVQTGQCTASAKIPRNLVTCLKYLSAESSASVVQGGEDLRLRVWDVRQAGLRPSLTIEGYTFFPLCVDVSAYGHEVLTSCKGFSGTGCETKLWDLRNTGAPVREYTGHAQDTTSCVFLETQRGVVDEEGRIDDG----DSGWDVPASVSYR-MVATASKDETIKIYDRDSGDTVVDHAELGCGGFTGLACQHDPGSGLPVLCASTITGGLYVFQLGQTRVVESAG------GAEGWRLRCVGFVRGTAIL 882
            +YSCSRDTT+RQWNRSG SALRVFEGHD+ACTA+ALS DE+TL SGS       WDVQTGQCT+SAK+PRNLVTCLK LS   S+SVVQ               GLR S+T++GYTFFPL +DVS+ GH+VLTSCKGF+G GCETKLWDLR+ G PVREYTGH QDTT+CVF+ ++ G     G  + G     + W   ++ S R M+ATASKD T+KIYD   G  +VDH E  CGG+TGLA Q D  +G PV  ASTITGGLY  +L +   V +AG      G  G RLRCVGFVRG  IL
Sbjct:    1 MYSCSRDTTVRQWNRSGISALRVFEGHDLACTAIALSEDEKTLYSGSXXXXXXAWDVQTGQCTSSAKVPRNLVTCLKCLSGGPSSSVVQXXXXXXXXXXXXXXXGLRSSMTVDGYTFFPLFLDVSSDGHQVLTSCKGFNGAGCETKLWDLRSPGIPVREYTGHTQDTTACVFVTSKEGGDGGSGAREGGYGLSPAPWPSLSAPSSRGMIATASKDGTVKIYDLADGSILVDHVEPECGGYTGLAIQRDSRTGGPVFYASTITGGLYALRLEEK--VATAGTSRTGLGEGGLRLRCVGFVRGNPIL 303          
BLAST of mRNA_S-firma_F_contig1020.319.1 vs. uniprot
Match: A0A6H5JBE9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE9_9PHAE)

HSP 1 Score: 311 bits (797), Expect = 1.120e-102
Identity = 174/337 (51.63%), Postives = 203/337 (60.24%), Query Frame = 1
Query:    1 VYSCSRDTTLRQWNRSGSSALRVFEGHDMACTALALSA----------------------------------DERTLASGSRDTSVRTWDVQTGQCTASAKIPRNLVTCLKYLSAESSASVVQGGEDLRLRVWDVRQAGLRPSLTIEGYTFFPLCVDVSAYGHEVLTSCKGFSGTGCETKLWDLRNTGAPVREYTGHAQDTTSCVFLETQRGVVDEEGRIDDG-----DSGWDVPASVSYRMVATASKDETIKIYDRDSGDTVVDHAELGCGGFTGLACQHDPGSGLPVLCASTITGGLYVFQLGQTRVVESAGGAE----GWRLRCVGFVRGTAIL 882
            +YSCSRDTT+RQWNRSG SALRVFEGHD+ACTA+ALS                                   DE+ L SGSRDTS+R WDVQTGQC +SAK+PRNLVTCLK LS E S+SV QGGEDL+LRVWD R+ GLRPS+TI+GYTFFP                           LWDLR+ G PVREYTGH QDTT+CVF+ ++ G  D  G  ++G          + A  S  M+ATASKD T+KIYD   G  +VDH E  CGG+TGLA Q D  +G PV  ASTITGGLY  +L +     +    E    G RLRCVGFVRG  IL
Sbjct:    1 MYSCSRDTTVRQWNRSGISALRVFEGHDLACTAIALSEGDVPSQRKILPARQSILSKLFHDDDPPPYEHSLEDEKALYSGSRDTSIRAWDVQTGQCISSAKVPRNLVTCLKCLSGELSSSVAQGGEDLKLRVWDAREGGLRPSMTIDGYTFFP---------------------------LWDLRSPGIPVREYTGHTQDTTACVFVTSKEGGDDGSGVEENGYGVSPSPSTSLSAPSSRGMIATASKDGTVKIYDLADGSILVDHVEPECGGYTGLAIQRDSRTGAPVFYASTITGGLYALRLEEEVATAAQSQTELQEGGLRLRCVGFVRGNPIL 310          
BLAST of mRNA_S-firma_F_contig1020.319.1 vs. uniprot
Match: A0A835ZHR6_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHR6_9STRA)

HSP 1 Score: 207 bits (528), Expect = 1.040e-62
Identity = 124/270 (45.93%), Postives = 153/270 (56.67%), Query Frame = 1
Query:    1 VYSCSRDTTLRQWNRSGSSALRVFEGHDMACTALALSADERTLASGSRDTSVRTWDVQTGQCTASAKIPRNLVTCLKYLSAESSASVV-QGGEDLRLRVWDVRQAGLRPSLTIEGYTFFPLCVDVSAYGHEVLTSCKGFSGTGCETKLWDLRNTGAPVREYTGHAQDTTSCVFLETQRGVVDEEGRIDDGDSGWDVPASVSYRMVATASKDETIK--IYDRDSGDTVVDHAELGCGGFTGLACQHDPGSGLPVLCASTITGGLYVFQLGQ 801
             YS SRDTTL QW + G   L  + GH +  +AL LSADE  L SGSRDTSVR WDV TGQ       PRNLVTCLK +  E   +VV QGGEDL+LR+WD R     P+ T++G+ +FPLC+DVS  G+ +LT  KGF+  GCE +LWD R TG  V+EY GHAQD T+C+                         A+ S   V TASKD+TIK  ++ R+SG  + D AE            H        LCA+T TGGLY  QL +
Sbjct:    6 AYSASRDTTLAQWGQ-GEGPLATYRGHTLTVSALDLSADETHLWSGSRDTSVRLWDVSTGQQRGMVATPRNLVTCLKCMPGEEGTNVVVQGGEDLKLRLWDFRTPSSVPAQTLDGFVYFPLCLDVSEDGNYLLTGSKGFNSVGCEGRLWD-RRTGQVVQEYNGHAQDVTACLLAPAAL-------------------AASSGGAVITASKDQTIKARVWGRESGQLLSDFAE-----------PHR-------LCAATFTGGLYDLQLSE 236          
BLAST of mRNA_S-firma_F_contig1020.319.1 vs. uniprot
Match: K3WSF6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSF6_GLOUD)

HSP 1 Score: 163 bits (413), Expect = 2.070e-44
Identity = 98/250 (39.20%), Postives = 138/250 (55.20%), Query Frame = 1
Query:    1 VYSCSRDTTLRQWNR------SGSSALR------VFEGHDMACTALALSADERTLASGSRDTSVRTWDVQTGQCTASAKIPRNLVTCLKYLSAESSASVVQGGEDLRLRVWDVRQAGLRPSLTIEGYTFFPLCVDVSAYGHEVLTSCKGFSGTGCETKLWDLRNTGAPVREYTGHAQDTTSCVFLETQRGVVDEEGRIDDGDSGWDVPASVSYRMVATASKDETIKIYDRDSGDTVVDHAELGCGGFTGL 714
            +YSCSRDTT+   +       S SS+ R         GH +  + +A++ DE +L SG RDT    WD+ TG+  A     +N++TC K++  E    VVQG EDL L++WD R     P+ +  GY +F LCVDVS  G+  LTS KGF+G GCE ++WD R TG  + E+ GH QDTTSC FL +  G    +      DS   V AS +  +  TASKD ++K++D  +   + +  E   G FT +
Sbjct:   79 IYSCSRDTTIALTSHIASKSSSPSSSSRKQPQPVYLRGHHLNVSTIAVNDDETSLCSGGRDTQTIFWDLTTGRLKAKNTTSQNVITCSKWVPVEPL--VVQGSEDLTLKLWDERTNLRAPAQSFHGYVYFALCVDVSPDGNYFLTSSKGFNGVGCEVRIWD-RRTGKQLYEFNGHQQDTTSCCFLPSATGSSSNDSVTSPADS---VRAS-AIPIPVTASKDGSVKVWDAATSSVLCEALEPSGGMFTSI 321          
BLAST of mRNA_S-firma_F_contig1020.319.1 vs. uniprot
Match: A0A485KVW2_9STRA (Aste57867_12386 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KVW2_9STRA)

HSP 1 Score: 164 bits (414), Expect = 2.750e-44
Identity = 99/253 (39.13%), Postives = 138/253 (54.55%), Query Frame = 1
Query:    1 VYSCSRDTTLRQWNRSGSSALRV-------------FEGHDMACTALALSADERTLASGSRDTSVRTWDVQTGQCTASAKIPRNLVTCLKYLSAESSASVVQGGEDLRLRVWDVRQAGLRPSLTIEGYTFFPLCVDVSAYGHEVLTSCKGFSGTGCETKLWDLRNTGAPVREYTGHAQDTTSCVFLETQRGVVDEEGRIDDGDSGWDVPASVSYRMVATASKDETIKIYDRDSGDTVVDHAELGCGGFTGLAC 720
            +YSCSRDTT+ + +  GS A                + GH +  +ALA++  E TLASGSRDT V  WDV T          +N+VTC+ ++  +++  V QGGEDLR+R+WD R A   P+ TIEGY +FPL +  S  GH +LTS KGF+  GCE ++WD R TG  V E  GHAQD T+C ++          GR  +G                TASKD +I+++D  +GD +    +   G FT ++C
Sbjct:  117 LYSCSRDTTIAR-HTFGSLANDPTTPSPTAVTTHPPYHGHTLTVSALAINESESTLASGSRDTGVSLWDVATSMRRQHTITSQNIVTCMAWVPRDANV-VAQGGEDLRVRLWDAR-AWKAPTQTIEGYIYFPLSIACSDDGHYLLTSSKGFNAVGCEGRVWD-RRTGKQVAEMRGHAQDATACAYIP---------GRNHEG---------------ITASKDSSIRVWDTTTGDLLASTQDANAGMFTSVSC 341          
BLAST of mRNA_S-firma_F_contig1020.319.1 vs. uniprot
Match: UPI00109BE923 (WD repeat-containing protein 31 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BE923)

HSP 1 Score: 159 bits (401), Expect = 1.010e-43
Identity = 95/267 (35.58%), Postives = 136/267 (50.94%), Query Frame = 1
Query:    1 VYSCSRDTTLRQWNRSG--SSALRVFEGHDMACTALALSADERTLASGSRDTSVRTWDVQTGQCTASAKIPRNLVTCLKYLSAESSASVVQGGEDLRLRVWDVRQAGLRPSLTIEGYTFFPLCVDVSAYGHEVLTSCKGFSGTGCETKLWDLRNTGAPVREYTGHAQDTTSCVFLETQRGVVDEEGRIDDGDSGWDVPASVSYRMVATASKDETIKIYDRDSGDTVVDHAELGCGGFTGLACQHDPGSGLPVLCASTITGGLYVFQL 795
            VYS SRD T++ W         +  +EGH +  T + L+ D+  L SGSRD SVR WDV TGQC +  ++ RNLV+C+K++    S  VVQ GED  ++VWD R   L P+ T     +F  C D S  G  +LT   GF+ +GCE  LWDLR     V +Y GH Q  ++C+FL    G+                     + ++ATAS D T++I+ R++ + ++     G G  T L    + G     LC S+   G+Y   L
Sbjct:    3 VYSSSRDKTIKLWKIGDCHQDPIDTYEGHKLVVTGIDLNNDQTVLFSGSRDNSVRLWDVVTGQCISHNEVTRNLVSCVKWIP--QSHEVVQTGEDKMVKVWDTRT--LTPAFTFPPKQYFQTCCDCSDDGKYILTCNNGFNRSGCEATLWDLRQK-KQVYQYVGHTQTASACIFLPFTEGIA-------------------PHPLIATASHDSTLRIWKRETKECILVEEFPGSGPLTSLTAWPNGG-----LCVSSFHVGIYKLNL 240          
BLAST of mRNA_S-firma_F_contig1020.319.1 vs. uniprot
Match: A0A1V9Z8M6_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z8M6_9STRA)

HSP 1 Score: 157 bits (397), Expect = 5.820e-42
Identity = 99/281 (35.23%), Postives = 143/281 (50.89%), Query Frame = 1
Query:    1 VYSCSRDTTLRQWNRSGSSALRV-----FEGHDMACTALALSADERTLASGSRDTSVRTWDVQTGQCTASAKIPRNLVTCLKYLSAESSASVVQGGEDLRLRVWDVRQAGLRPSLTIEGYTFFPLCVDVSAYGHEVLTSCKG-------------FSGTGCETKLWDLRNTGAPVREYTGHAQDTTSCVFLETQRGVVDEEGRIDDGDSGWDVPASVSYRMVATASKDETIKIYDRDSGDTVVDHAELGCGGFTGLACQHDPGSGLPVLCASTITGGLYVF 789
            +Y+CSRDTT+ ++      A+       F GH ++ +A+ ++  E  LASGSRDTSV  WDV T          +N+VTC+ ++    +  V QGGEDLR+R+WD R A   P  TIEGY +FPL +DVS  G+ +LTS KG             F+G GCE ++WD R TG  V E  GH QD T+C +++ +                           V TASKD ++++++  SG  V    +   G FT L       +G+  +  S+ TG L V+
Sbjct:   97 LYACSRDTTISRYRLDFDGAVNTVKMESFAGHSLSVSAITINGSETQLASGSRDTSVSLWDVATTTQLQHTTTSQNIVTCMAWVPIHDTL-VAQGGEDLRVRIWDSR-AWKSPVQTIEGYVYFPLSLDVSDDGNYILTSSKGTILSWICWLMPLGFNGVGCEGRVWD-RRTGKQVCEMAGHLQDATACSYIKQRN------------------------EYVLTASKDSSLRVWNSASGALVSSTYDHALGMFTALTSLPPDDAGIVRIFTSSFTGHLAVY 350          
BLAST of mRNA_S-firma_F_contig1020.319.1 vs. uniprot
Match: G1MSN0_MELGA (WD repeat domain 31 n=6 Tax=Galliformes TaxID=8976 RepID=G1MSN0_MELGA)

HSP 1 Score: 153 bits (387), Expect = 6.210e-41
Identity = 104/273 (38.10%), Postives = 138/273 (50.55%), Query Frame = 1
Query:    4 YSCSRDTTLRQWNRSGSSALR-VFEGHDMACTALALSADERTLASGSRDTSVRTWDVQTGQCTASAKIPRNLVTCLKYLSAESSASVVQGGEDLRLRVWDVRQAGLRPSLTIEGYTFFPLCVDVSAYGHEVLTSCKGFSGTGCETKLWDLRNTGAPVREYTGHAQDTTSCVFLETQRGVVDEEGRIDDGDSGWDVPASVSYRMVATASKDETIKIYDRDSGDTVVDHAELGCGGFTGLA-CQHDPGSGLPVLCASTITGGLYVFQLGQTRVVE 816
            +S SRD T+  W   G+S  R  F GH++  T LA+S D   L +GSRD +VR WDV+TG+C   A + RNLVT L ++  E    V+Q  ED  +R+WD R+  L+ + T  G        DVS  G   ++S  GF+G GCE  LWDLR T + V EY GH Q T SCVFL   RG                 PA      +AT+S D  +K++DRD+   +      G G    LA C         +LCAS    G++V QL     +E
Sbjct:   71 FSASRDRTVMMWELHGTSGPRQCFPGHELVVTGLAVSPDASRLCTGSRDNTVRKWDVETGECLCRAALSRNLVTHLCWVPGEPY--VIQTSEDKTIRMWDSRE--LQVAHTFPGKQHIQTSCDVSQDGRYCVSSSSGFAGEGCEATLWDLRQTRSRVCEYRGHLQTTASCVFLP--RG-----------------PALTP--SIATSSYDSKVKVWDRDTAACLATACLEGAGPLASLAACDSST-----LLCAS-FRSGIHVLQLRHREELE 312          
BLAST of mRNA_S-firma_F_contig1020.319.1 vs. uniprot
Match: UPI0009E229CA (WD repeat-containing protein 31-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E229CA)

HSP 1 Score: 152 bits (384), Expect = 4.140e-40
Identity = 95/261 (36.40%), Postives = 132/261 (50.57%), Query Frame = 1
Query:    1 VYSCSRDTTLRQWNRSGSSALRVFEGHDMACTALALSADERTLASGSRDTSVRTWDVQTGQCTASAKIPRNLVTCLKYLSAESSASVVQGGEDLRLRVWDVRQAGLRPSLTIEGYTFFPLCVDVSAYGHEVLTSCKGFSGTGCETKLWDLRNTGAPVREYTGHAQDTTSCVFLETQRGVVDEEGRIDDGDSGWDVPASVSYRMVATASKDETIKIYDRDSGDTVVDHAELGCGGFTGLACQHDPGSGLPVLCASTITGGLY 783
            VYS SRD T++ W++  +  L  FEGH +  TA+ L+ D   L SGSRD  VR WD       +  ++ RNLV+C+K++   +   V Q GED  LRVWD R   ++P  T     +F    D S  G  +LT   GF+G GCE+ LWD+R      R Y GH Q T++C+FL     V             W      S  ++ATAS D T+KI++R+  + +      G G  T L C  D GS    +C ST   G++
Sbjct:  106 VYSSSRDKTIKAWHQEKNDPLLTFEGHRLVVTAIDLNDDGTLLFSGSRDNCVRLWDTTRKTSVSEKEVSRNLVSCVKWIPG-TQTQVAQTGEDKMLRVWDTRN--MQPVFTFPAQQYFQTYCDCSRDGRFILTCSNGFNGKGCESTLWDVRAQQMICR-YIGHYQTTSACIFLPRLEHV-------------W------SKDLIATASHDSTVKIWEREGTECITTLDCAGAGPLTDL-CVWDDGS----ICISTTNMGVF 338          
BLAST of mRNA_S-firma_F_contig1020.319.1 vs. uniprot
Match: A0A8K1CV93_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CV93_PYTOL)

HSP 1 Score: 152 bits (385), Expect = 5.500e-40
Identity = 105/291 (36.08%), Postives = 156/291 (53.61%), Query Frame = 1
Query:    1 VYSCSRDTTLRQWNRSGS----SALRVFEGHDMACTALALSADERTLASGSRDTSVRTWDVQTGQCTASAKIPRNLVTCLKYLSAESSASVVQGGEDLRLRVWDVRQAGLRPSLTIEGYTFFPLCVDVSAYGHEVLTSCKGFSGTGCETKLWDLRNTGAPVREYTGHAQDTTSCVFLETQRGVVDE-EGRIDDGDSGWDVPASVSYRMVATASKDETIKIYDRDSGDTVVDHAELGCGG-FTGLACQHDPGSGLPVLCASTITGGL--YVFQLGQTRVVESAGGAEGWRLR 849
            +YS SRDTT+       +    SA    +GH +  +A+A+  DE +L SG RDT    WD+ T +  +     +N++TC K++  E    V+QG EDL +++WD R A   P  T+ GY +FPLC+DVS  G   +TS KGF+G G E ++WD R  G  + ++ GH QD ++C FL   RGV+D  EG     ++   +P  VS      ASKD +IK+++ ++ + ++  A    G  FT LA   D G+ L    A+T  G L  YV+   Q     S G ++ W  R
Sbjct:  114 LYSSSRDTTIAVTTPVSAAETESASIKLQGHTLNVSAIAVDTDETSLCSGGRDTQTMFWDLTTAKIKSKNTTAQNVITCSKWVPTEHV--VLQGSEDLSVKLWDERSALRTPVQTLRGYVYFPLCLDVSRDGLYFMTSSKGFNGVGAEVRVWD-RRVGKQLLQFEGHQQDASACCFLP--RGVLDSSEGEAPVPNASNGIPTPVS------ASKDGSIKVWNVNAENQLLCEANEPSGRMFTSLASTGDDGTVL----AATFNGDLHAYVYDTKQ----RSIGLSKSWHQR 385          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1020.319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJK8_ECTSI1.050e-11359.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBE9_9PHAE1.120e-10251.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZHR6_9STRA1.040e-6245.93WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
K3WSF6_GLOUD2.070e-4439.20Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A485KVW2_9STRA2.750e-4439.13Aste57867_12386 protein n=1 Tax=Aphanomyces stella... [more]
UPI00109BE9231.010e-4335.58WD repeat-containing protein 31 n=1 Tax=Exaiptasia... [more]
A0A1V9Z8M6_9STRA5.820e-4235.23Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
G1MSN0_MELGA6.210e-4138.10WD repeat domain 31 n=6 Tax=Galliformes TaxID=8976... [more]
UPI0009E229CA4.140e-4036.40WD repeat-containing protein 31-like n=1 Tax=Orbic... [more]
A0A8K1CV93_PYTOL5.500e-4036.08Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1020contigS-firma_F_contig1020:22058..24231 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LJK8
Preferred nameWDR31
PFAMsDUF4496,WD40
Max annot lvl2759|Eukaryota
Evalue1.73e-114
EggNOG OGsKOG0279@1|root,KOG0279@2759|Eukaryota
Descriptionpositive regulation of Golgi to plasma membrane protein transport
COG categoryS
Hectar predicted targeting categoryother localisation
Exons5
Model size885
Cds size885
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1020.319.1prot_S-firma_F_contig1020.319.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1020 22058..24231 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815548.912837-CDS-S-firma_F_contig1020:22057..222811622815548.912837-CDS-S-firma_F_contig1020:22057..22281Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1020 22058..22281 -
1696949408.138976-CDS-S-firma_F_contig1020:22057..222811696949408.138976-CDS-S-firma_F_contig1020:22057..22281Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1020 22058..22281 -
1622815548.9296932-CDS-S-firma_F_contig1020:22671..228941622815548.9296932-CDS-S-firma_F_contig1020:22671..22894Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1020 22672..22894 -
1696949408.1506546-CDS-S-firma_F_contig1020:22671..228941696949408.1506546-CDS-S-firma_F_contig1020:22671..22894Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1020 22672..22894 -
1622815548.9402936-CDS-S-firma_F_contig1020:23246..233271622815548.9402936-CDS-S-firma_F_contig1020:23246..23327Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1020 23247..23327 -
1696949408.160129-CDS-S-firma_F_contig1020:23246..233271696949408.160129-CDS-S-firma_F_contig1020:23246..23327Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1020 23247..23327 -
1622815548.9514046-CDS-S-firma_F_contig1020:23472..237141622815548.9514046-CDS-S-firma_F_contig1020:23472..23714Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1020 23473..23714 -
1696949408.1777518-CDS-S-firma_F_contig1020:23472..237141696949408.1777518-CDS-S-firma_F_contig1020:23472..23714Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1020 23473..23714 -
1622815548.9628048-CDS-S-firma_F_contig1020:24116..242311622815548.9628048-CDS-S-firma_F_contig1020:24116..24231Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1020 24117..24231 -
1696949408.1954231-CDS-S-firma_F_contig1020:24116..242311696949408.1954231-CDS-S-firma_F_contig1020:24116..24231Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1020 24117..24231 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1020.319.1

>prot_S-firma_F_contig1020.319.1 ID=prot_S-firma_F_contig1020.319.1|Name=mRNA_S-firma_F_contig1020.319.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=295bp
VYSCSRDTTLRQWNRSGSSALRVFEGHDMACTALALSADERTLASGSRDT
SVRTWDVQTGQCTASAKIPRNLVTCLKYLSAESSASVVQGGEDLRLRVWD
VRQAGLRPSLTIEGYTFFPLCVDVSAYGHEVLTSCKGFSGTGCETKLWDL
RNTGAPVREYTGHAQDTTSCVFLETQRGVVDEEGRIDDGDSGWDVPASVS
YRMVATASKDETIKIYDRDSGDTVVDHAELGCGGFTGLACQHDPGSGLPV
LCASTITGGLYVFQLGQTRVVESAGGAEGWRLRCVGFVRGTAIL*
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mRNA from alignment at S-firma_F_contig1020:22058..24231-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1020.319.1 ID=mRNA_S-firma_F_contig1020.319.1|Name=mRNA_S-firma_F_contig1020.319.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2174bp|location=Sequence derived from alignment at S-firma_F_contig1020:22058..24231- (Sphaerotrichia firma ET2_F female)
GTCTACAGCTGCTCTCGAGACACTACCCTCAGGCAATGGAACCGATCGGG ATCCTCAGCTCTTCGGGTGTTTGAGGGTCACGACATGGCTTGTACAGCGT TGGCACTCAGCGCAGGTTCGACAAAAAATATCGGTGCATAAGAACAGTAG CGCAGCTGTACGCTACAAGTACAAGTGGCCGCGAGTCACATCTGGTTTTC TGAAATGGCAGTGTGGACTTCTCAGACGGTCGTACGCATCTAGCTTGACC ACCCTGTCGGGACTCCTGGGGCGTCGTACCGTAACACAAACAACCACGTT TCGCCCGCTGGTGTTTAACGTTACGAATGCATTCTAGTGTTCTACAGCGA GAAGACAAGCAAGAAGTTCATCAAAAGCATCGCGATCTAGCCTACACATC TGCTTTCTTCGTTGCCGTCTACGATCGCCTTGTTGTCGTGGGCTCCGTCA TCCTCCTTGGAAAATCCCCGTGGTAGACAAACACCAGCGCGCATACGTCG ATATTTGTTCGTTGTAGATGAGAGAACCCTCGCCTCTGGATCTCGCGACA CAAGCGTTCGGACATGGGACGTGCAGACGGGGCAGTGCACTGCCTCGGCG AAGATTCCGCGGAACTTGGTGACGTGTCTCAAGTACCTGTCCGCGGAGTC GTCGGCTTCCGTGGTGCAGGGAGGGGAGGACCTGAGGCTACGAGTGTGGG ACGTGCGGCAGGCTGGGCTGCGACCGTCGCTCACAATCGAGGGCTACACT TTCTTCCCGGTACGGCACGCAAGCAGCAGCGATGTGCCCACAGACAGGAT GATAACGAGGATGGTTGCCTCAAAGTATTGTGGGCACATATAAATAATGC CGCTTGGTCTCCAACACGTTCGATCTGTGTCTGCGATGTCTATGTGTTGC GCAGCTTTGCGTCGATGTCTCAGCATACGGTCATGAGGTCCTGACGTCCT GCAAGGGCTTTAGTGGCACCGGGTGCGAGACGAAGGTCAGAACGCTGCTG CTGTTGTGTATGCACCTGGTACGGTGCAGGAAACCTCAGGAATCACAACA ATATGAACGATTGTTTCGCCTTTGACGGGATCTTTCTCGCAAAGTGTGAT GGGCGCTCACGGCATAACGACTTCGTTCAATGAAATAGATGATGCGATCG ATCTCTCGCCCTCGGAGGTGTGCATACAAATTGCCAGTGCTTACGCACAG AACACGGCCTGCCCCGTTCTCATGCTTCCAAATTCTGAGCGGATTGCATT CCTTGCAGAGACGATTAAACGGATCTCCAACCCTTGCCATCCCTGACGCT CCTTCGGACTTGATTTTTCTCTCGTGTCCCTCACCAGCTGTGGGATCTCC GCAACACGGGGGCGCCCGTGCGGGAGTACACCGGCCATGCTCAAGACACA ACTTCCTGCGTCTTCTTAGAAACGCAGAGAGGAGTTGTCGACGAGGAGGG ACGAATAGACGACGGCGACAGCGGCTGGGATGTCCCCGCCTCCGTCTCCT ACCGAATGGTTGCTACGGCTTCCAAGGACGAGACTATCAAGATCTACGAC CGAGATAGTGGTGGGTCGTTTTTTGGCTTTTCTGTGCCAACTCGGACTGT GGGACTTGCTTTCGTTTGATGGGTGCTTAATGTGCGAAGAAAAAGTCTAA TTTTTTTGCGTGTCCAGCTGATCTTCGTTCGGCACGCGCCCTTTGAAAAA GGATGCAGTGTGGGTGCATGACCTTGCCGGAGAGTATAGGGCGCATGTAG ATCAGATTCCTGTCAACAAGAGACAGCAGTAGGCAGGCAGTGCACCACTG ACTGACGACGACTTGTTGTGTAAGGTCAAGACTCATAGCCTGTTTCTCCT CAAGCTTCGGAAGGAAGGGACTGTCTCCAGAGTACAGGGGTTTTATCGCT GCCACACCCACTTCAAGCTGTTTTCGCTCCCTCCTTGTCCAACACAACAG GCGACACTGTCGTCGATCACGCCGAGCTTGGGTGCGGTGGATTCACCGGC CTCGCCTGTCAGCACGATCCCGGGTCGGGGCTGCCCGTCCTCTGCGCGTC GACCATCACGGGGGGCTTGTACGTGTTTCAGCTGGGACAGACCCGGGTGG TGGAGAGCGCGGGCGGAGCGGAGGGGTGGCGATTGCGTTGCGTTGGCTTT GTGCGGGGCACAGCGATTTTATGA
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Coding sequence (CDS) from alignment at S-firma_F_contig1020:22058..24231-

>mRNA_S-firma_F_contig1020.319.1 ID=mRNA_S-firma_F_contig1020.319.1|Name=mRNA_S-firma_F_contig1020.319.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1770bp|location=Sequence derived from alignment at S-firma_F_contig1020:22058..24231- (Sphaerotrichia firma ET2_F female)
GTCTACAGCTGCTCTCGAGACACTACCCTCAGGCAATGGAACCGATCGGG
ATCCTCAGCTCTTCGGGTGTTTGAGGGTCACGACATGGCTTGTACAGCGT
TGGCACTCAGCGCAGGTCTACAGCTGCTCTCGAGACACTACCCTCAGGCA
ATGGAACCGATCGGGATCCTCAGCTCTTCGGGTGTTTGAGGGTCACGACA
TGGCTTGTACAGCGTTGGCACTCAGCGCAGATGAGAGAACCCTCGCCTCT
GGATCTCGCGACACAAGCGTTCGGACATGGGACGTGCAGACGGGGCAGTG
CACTGCCTCGGCGAAGATTCCGCGGAACTTGGTGACGTGTCTCAAGTACC
TGTCCGCGGAGTCGTCGGCTTCCGTGGTGCAGGGAGGGGAGGACCTGAGG
CTACGAGTGTGGGACGTGCGGCAGGCTGGGCTGCGACCGTCGCTCACAAT
CGAGGGCTACACTTTCTTCCCGATGAGAGAACCCTCGCCTCTGGATCTCG
CGACACAAGCGTTCGGACATGGGACGTGCAGACGGGGCAGTGCACTGCCT
CGGCGAAGATTCCGCGGAACTTGGTGACGTGTCTCAAGTACCTGTCCGCG
GAGTCGTCGGCTTCCGTGGTGCAGGGAGGGGAGGACCTGAGGCTACGAGT
GTGGGACGTGCGGCAGGCTGGGCTGCGACCGTCGCTCACAATCGAGGGCT
ACACTTTCTTCCCGCTTTGCGTCGATGTCTCAGCATACGGTCATGAGGTC
CTGACGTCCTGCAAGGGCTTTAGTGGCACCGGGTGCGAGACGAAGCTTTG
CGTCGATGTCTCAGCATACGGTCATGAGGTCCTGACGTCCTGCAAGGGCT
TTAGTGGCACCGGGTGCGAGACGAAGCTGTGGGATCTCCGCAACACGGGG
GCGCCCGTGCGGGAGTACACCGGCCATGCTCAAGACACAACTTCCTGCGT
CTTCTTAGAAACGCAGAGAGGAGTTGTCGACGAGGAGGGACGAATAGACG
ACGGCGACAGCGGCTGGGATGTCCCCGCCTCCGTCTCCTACCGAATGGTT
GCTACGGCTTCCAAGGACGAGACTATCAAGATCTACGACCGAGATAGTGC
TGTGGGATCTCCGCAACACGGGGGCGCCCGTGCGGGAGTACACCGGCCAT
GCTCAAGACACAACTTCCTGCGTCTTCTTAGAAACGCAGAGAGGAGTTGT
CGACGAGGAGGGACGAATAGACGACGGCGACAGCGGCTGGGATGTCCCCG
CCTCCGTCTCCTACCGAATGGTTGCTACGGCTTCCAAGGACGAGACTATC
AAGATCTACGACCGAGATAGTGGCGACACTGTCGTCGATCACGCCGAGCT
TGGGTGCGGTGGATTCACCGGCCTCGCCTGTCAGCACGATCCCGGGTCGG
GGCTGCCCGTCCTCTGCGCGTCGACCATCACGGGGGGCTTGTACGTGTTT
CAGCTGGGACAGACCCGGGTGGTGGAGAGCGCGGGCGGAGCGGAGGGGTG
GCGATTGCGTTGCGTTGGCTTTGTGCGGGGCACAGCGATTTTATGAGCGA
CACTGTCGTCGATCACGCCGAGCTTGGGTGCGGTGGATTCACCGGCCTCG
CCTGTCAGCACGATCCCGGGTCGGGGCTGCCCGTCCTCTGCGCGTCGACC
ATCACGGGGGGCTTGTACGTGTTTCAGCTGGGACAGACCCGGGTGGTGGA
GAGCGCGGGCGGAGCGGAGGGGTGGCGATTGCGTTGCGTTGGCTTTGTGC
GGGGCACAGCGATTTTATGA
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