mRNA_S-firma_F_contig10199.309.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10199.309.1
Unique NamemRNA_S-firma_F_contig10199.309.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10199.309.1 vs. uniprot
Match: A0A7S4UWB1_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4UWB1_9DINO)

HSP 1 Score: 253 bits (645), Expect = 3.660e-78
Identity = 134/265 (50.57%), Postives = 166/265 (62.64%), Query Frame = 1
Query:    1 RTINAYKPEMMAHPELFDTARGWQPEWFDPALLAALGDGSPAALRSLVTEVTPGVFMLPFFTAAFCGMLMDELRAYEATPLEKTRPNSMNNYGLILNDMGLEGMMSALLEGYARPFAAELFPEAGSAVDHHHSFLVQYAPGQDTHLDMHIDDSEVTLNVSLTSEFTGAGLAFCGNIHSTSHRKHSLTYAHRLGYAVIHLGRHRHGALHIEAGERVNLIMWMRSAELRRQPGYTHISRVVGEE----DPDAVCLSRTHDPDYDEWR 783
            R I+ Y+  M AH  LFD A+GW  EWFDPALLAAL  G   ALR L  E    V+ LP F  AFC ML++E+ ++ A+ L   RPNSMNNYG+++N++GLE ++  L     +P A  LFP AGS +D HHSF+V+Y  G+D  LDMH DDS+VT NV L  +F GAGL FCGN  +  HR  S  Y H  G  V+HLG  RHGA  I  GER+NLI+W +++E RR  GY       G E     PD VCLS THD DY  +R
Sbjct:  163 RVISMYE-RMRAHACLFDAAQGWTREWFDPALLAALDSGVDGALRGLAREEVWEVYSLPLFATAFCDMLVEEVDSFSASKLPARRPNSMNNYGVVVNEIGLEPLLDRLQREVLQPLARALFPGAGSHLDRHHSFVVRYKVGEDLGLDMHTDDSDVTFNVCLGRDFQGAGLRFCGNQATAKHRHASAVYGHARGRCVVHLGHRRHGADDITEGERLNLIVWNKNSEYRRTEGYRRHLPGDGYEREAGPPDRVCLSFTHDRDYGVFR 426          
BLAST of mRNA_S-firma_F_contig10199.309.1 vs. uniprot
Match: A0A6B2L3U1_9EUKA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L3U1_9EUKA)

HSP 1 Score: 251 bits (642), Expect = 8.780e-78
Identity = 131/266 (49.25%), Postives = 169/266 (63.53%), Query Frame = 1
Query:    4 TINAYKPEMMAHPELFDTARGWQPEWFDPALLAALGDGSPAALRSLVTEVTPGVFMLPFFTAAFCGMLMDELRAYEATPLEKTRPNSMNNYGLILNDMGLEGMMSALLEGYARPFAAELFPE-AGSAVDHHHSFLVQYAPGQDTHLDMHIDDSEVTLNVSLTSEFTGAGLAFCG--NIHSTSHRKHSLTYAHRLGYAVIHLGRHRHGALHIEAGERVNLIMWMRSAELRRQPGYTHISRVVGEEDPDAVCLSRTHDPDYDEWREKF 792
            TI  Y+P    HPELFDT RGW  EWFD   + A+  G+   + +L+ E   GV+     +  +C  LM+E+R +E + L K RPNSMNNYGLILN++GLE M    +E Y +P A  LF E  G ++DHHH+F+V+Y  G+D  LDMH DDSEVTLNV+L   F GA L FCG  N    + RKH+LTY H+ G AV+HLG  RHGA  I +GER NLI+W RS++ R Q  +    +   EE PD +CLS+THD DY  W+  F
Sbjct:  188 TITHYRP---IHPELFDTNRGWHDEWFDKDFIEAIKTGTSIRIAALMKEDCKGVYSFNMLSQLYCQKLMEEIRNFENSDLPKQRPNSMNNYGLILNNIGLEPMFDIFIEVYMKPIATLLFSEFGGRSLDHHHTFVVEYKVGKDLSLDMHTDDSEVTLNVNLYDSFEGASLNFCGRRNAEHGAERKHALTYNHKKGRAVVHLGSLRHGAAPITSGERFNLIVWGRSSQYREQGRHREYYKHF-EEVPDPICLSKTHDQDYKYWKHVF 449          
BLAST of mRNA_S-firma_F_contig10199.309.1 vs. uniprot
Match: A0A7S4P4C6_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4P4C6_9EUKA)

HSP 1 Score: 248 bits (632), Expect = 2.840e-76
Identity = 134/270 (49.63%), Postives = 171/270 (63.33%), Query Frame = 1
Query:    1 RTINAYKPEMMA-HPELFDTAR-GWQPEWFDPALLAALGDGSPAALRSLVTEVTPGVFMLPFFTAAFCGMLMDELRAYEATPLEKTRPNSMNNYGLILNDMGLEGMMSALLEGYARPFAAELFPEAGSAVDHHHSFLVQYAPGQDTHLDMHIDDSEVTLNVSLTSEFTGAGLAFCGNIHSTSHRKHSLTYAHRLGYAVIHLGRHRHGALHIEAGERVNLIMWMRSAELRRQPGYTHISRVVGEE---DPDAVCLSRTHDPDYD-EWREKF 792
            R + AYK   +A HP LF   +  W   WF P  + A+  G+  AL S++TE   GVF  P F+  FC MLMDE+  Y A+ L K RPNSMNNYGLILN++G+    +     Y +  ++ LFP  G+++D HHSF+VQY  G+D  LDMHIDDSEVTLNV L  EF+GAGL FCGN   ++HRK SL Y H +G A++HLG  RHGA  I  GER+NLI+W R    R     + + R  GE+    PD VCLSRTHD DYD ++ +KF
Sbjct:  178 RAVIAYKYRAIAKHPALFSPGKIEWDNTWFAPEFIKAIESGTDEALSSILTEEAEGVFSFPIFSQKFCDMLMDEVDNYAASGLPKKRPNSMNNYGLILNEIGMANFFTQFQRKYLQRLSSYLFPIQGASLDDHHSFIVQYKQGEDLGLDMHIDDSEVTLNVCLGREFSGAGLTFCGNFGHSAHRKKSLAYHHVVGRAILHLGSRRHGADDISTGERLNLIVWNRCHAFR---SCSLMDRWPGEDAEGGPDLVCLSRTHDQDYDLQFLKKF 444          
BLAST of mRNA_S-firma_F_contig10199.309.1 vs. uniprot
Match: A9V9W4_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V9W4_MONBE)

HSP 1 Score: 248 bits (632), Expect = 6.100e-75
Identity = 127/257 (49.42%), Postives = 161/257 (62.65%), Query Frame = 1
Query:   37 HPELFDTARGWQPEWFDPALLAALGDGSP-AALRSLVTEVTPGVFMLPFFTAAFCGMLMDELRAYEATPLEKTRPNSMNNYGLILNDMGLEGMMSALLEGYARPFAAELFPEA--GSAVDHHHSFLVQYAPGQDTHLDMHIDDSEVTLNVSLTSEFTGAGLAFCGNIHSTSHRKHSLTYAHRLGYAVIHLGRHRHGALHIEAGERVNLIMWMRSAELRRQPGYT--HISRVVGEEDPDAVCLSRTHDPDYDEWREKF 792
            HP LFD  RGW   WF P+   A+   +P AA+RSL  E+TPGV+    FT  FC ++  +L AYE + L KTRPNSMN YG+IL DMG+  M+  LL     P    L P    G A+DHHHSF+VQY  G D HLDMH DD+E T NV+LT +F+G+GL FCG   +TSHRK +  Y H+ G+AV+H G HRHGA  ++ G R NLI+W RS+  R+   Y   + +  + EE PD  CLS THD DY  W + F
Sbjct:  297 HPALFDAVRGWPETWFLPSFWTAMHAPNPEAAIRSLAREITPGVWSFGMFTPEFCDLMAADLAAYEKSGLPKTRPNSMNRYGMILADMGMASMLDRLLWEMLNPIQRALLPALAQGLALDHHHSFVVQYEEGLDVHLDMHTDDAEFTCNVNLTDDFSGSGLTFCGMHGATSHRKLAGVYQHQRGHAVVHAGLHRHGADPLQTGRRENLIIWCRSSAYRQTREYKARYANPFLSEEAPDQRCLSTTHDRDYSHWTDVF 553          
BLAST of mRNA_S-firma_F_contig10199.309.1 vs. uniprot
Match: A0A061QWD7_9CHLO (Prolyl 4-hydroxylase alpha subunit (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QWD7_9CHLO)

HSP 1 Score: 239 bits (610), Expect = 2.640e-74
Identity = 123/257 (47.86%), Postives = 157/257 (61.09%), Query Frame = 1
Query:   28 MMAHPELFDTARGWQPEWFDPALLA---ALGDGSPAALRSLVTEVTPGVFMLPFFTAAFCGMLMDELRAYEATPLEKTRPNSMNNYGLILNDMGLEGMMSALLEGYARPFAAELFPEAGSAVDHHHSFLVQYAPGQDTHLDMHIDDSEVTLNVSLTSEFTGAGLAFCGNIHSTSHRKHSLTYAHRLGYAVIHLGRHRHGALHIEAGERVNLIMWMRSAELRRQPGYTHISRVVGEED--PDAVCLSRTHDPDYDEWR 783
            M  HPELFDT +GW+ +WF   L+    ++G G  +A+  LV E + G++  P F   FC MLM+E+  Y  + L   RPNSMNNYGL+LN++G+  M++ L + Y  P A  LFP  GS  D HHSF+V+Y  G+D  LDMH DDS+VT NV L  EFTGAGL FCG   + +HRK    Y H +G  V+HLG HRHGA  +  GER NLI+W  +   R      HI R   +ED  PD  CLS THD DY  +R
Sbjct:   72 MRKHPELFDTEQGWRTDWFPDELIRFQNSIGSGIESAVEQLVKEESSGIYSFPLFRVEFCNMLMEEMENYCDSGLPIRRPNSMNNYGLVLNEIGMRDMITQLQQQYLLPIAKTLFPVEGSQFDFHHSFIVKYKQGEDLGLDMHTDDSDVTFNVCLGREFTGAGLTFCGRSRTAAHRKFQFKYPHVVGRCVVHLGSHRHGADDLATGERNNLIIWNHNKRYRATGA--HIGRSYEKEDGPPDPECLSFTHDRDYGHFR 326          
BLAST of mRNA_S-firma_F_contig10199.309.1 vs. uniprot
Match: A0A7S3BJR9_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BJR9_9VIRI)

HSP 1 Score: 235 bits (599), Expect = 8.160e-73
Identity = 127/260 (48.85%), Postives = 164/260 (63.08%), Query Frame = 1
Query:    4 TINAYKPEMMAHPELFDTARGWQPEWFDPALL-AALGDGSPAALRSLVTEVTPGVFMLPFFTAAFCGMLMDELRAYEATPLEKTRPNSMNNYGLILND-MGLEGMMSALLEGYARPFAAELFPEAGSAVDHHHSFLVQYAPGQDTHLDMHIDDSEVTLNVSLTSEFTGAGLAFCGNIHSTSHRKHSLTYAHRLGYAVIHLGRHRHGALHIEAGERVNLIMWMRSAELRRQPGYTHISRVVGEEDPDAVCLSRTHDPDYDE 777
            TI AY+P+   HPELF+     + EWFD A + A L DGS  A+R+ V E   G +  P FT AFCG+L+DE   Y+A+ L   RPNSMN YGLILND +GLE  + AL     +P A  LFP+ G  +D HH+FLV Y  G+D  LD H DDS+VT N +L  EFTGAGL+ CG +     RK    Y H +G  ++HLGRHRHGA  IE+GER+NLI+W  ++  R+   Y  I      ++PDAVC+S THD DY++
Sbjct:   54 TIEAYRPQAR-HPELFEG--DLREEWFDLAFVQAVLRDGSAEAVRAFVKEECAGAYSFPMFTPAFCGLLIDEAEHYQASGLPVRRPNSMNAYGLILNDGIGLESFIDALHRRALQPVARALFPQEGCRLDGHHAFLVHYQQGKDLGLDTHTDDSDVTFNTALGKEFTGAGLSLCGMMGGAGMRKLRHVYRHVVGRCLVHLGRHRHGADDIESGERINLIVWNHNSLWRKSTPYRSIELPDETDEPDAVCVSYTHDRDYEQ 310          
BLAST of mRNA_S-firma_F_contig10199.309.1 vs. uniprot
Match: A0A8J5X6X5_DIALT (Fe2OG dioxygenase domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X6X5_DIALT)

HSP 1 Score: 238 bits (608), Expect = 1.050e-72
Identity = 135/271 (49.82%), Postives = 169/271 (62.36%), Query Frame = 1
Query:    4 TINAYKPEMMAHPELFDTARGWQPEWFDPALLAALGDGSPAALRSLVTEVTPGVFMLPFFTAAFCGMLMDELRAYEATPLEKTRPNSMNNYGLILNDMGLEGMMSALLEGYARPFAAELFPEA---GS-AVDHHHSFLVQYAPGQDTHLDMHIDDSEVTLNVSLTSEFTGAGLAFCGNIHSTSHRKHSLTYAHRLGYAVIHLGRHRHGALHIEAGERVNLIMWMRSAELR-RQPGYTHISRVVGEEDPDAVCLSRTHDPDYDEWREKFGGV 801
            TI+AY P +  H  LF         W +P +LAA      AA+RS V E+ PGVF L  FT A CG+L+DELR +E T L  +RPNSMN +G+I++++G+E +M  L      P A  LF E+   GS ++DHHH+F V Y P  DT LDMH DDSEVTLNV L S F GAGL FCG    T++RKH +TYAH+ G AV+HLGR RHGA  I  GER +LI+W RS+  R R P    + + V    PD  CLS THD DY+ W+E   GV
Sbjct:  171 TISAYAP-LRTHGALFAQPPALLAGWVEPRVLAACDARDDAAIRSCVHELAPGVFSLALFTPALCGLLLDELRGFERTGLPASRPNSMNRHGVIVDEIGMERLMDELRVRLVCPLAEALFTESDQGGSHSLDHHHAFSVTYTPSADTGLDMHHDDSEVTLNVCLGSRFEGAGLTFCGRFGETTYRKHIVTYAHQPGRAVLHLGRQRHGADTIVRGERSSLIVWARSSSYRARAPDEPPMHQRVA---PDLCCLSYTHDIDYETWQELPPGV 437          
BLAST of mRNA_S-firma_F_contig10199.309.1 vs. uniprot
Match: A0A7S3BDV8_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3BDV8_9EUKA)

HSP 1 Score: 238 bits (608), Expect = 2.280e-72
Identity = 128/266 (48.12%), Postives = 161/266 (60.53%), Query Frame = 1
Query:    4 TINAYKPEMMAHPELFDTARGWQPEWFDPALLAAL-GDGSPAALRSLVTEVTPGVFMLPFFTAAFCGMLMDELRAYEATPLEKTRPNSMNNYGLILNDMGLEGMMSALLEGYARPFAAELFPEAGSAVDHHHSFLVQYAPGQDTHLDMHIDDSEVTLNVSLTSEFTGAGLAFCGNIHS--TSHRKHSLTYAHRLGYAVIHLGRHRHGALHIEAGERVNLIMWMRSAELRRQPGYT--HISRVVGEEDPDAVCLSRTHDPDYDEWRE 786
            T+  Y+ + + H ELFD A G Q +WFDP+  A   G   P A+R LV EV PG+F  P F+  FC  L+DE   YEA+ L   RPNSMNNYG++LN +G+E +M  L   + RP A ELFP  G  +DHHH+F+VQY  G+D  LDMH D  +VTLNV L  EFTGAGL FCG   S     RK    + H  G A++HLG  RHGA  I+ GER NLIMW +SA  R    +   + +       PD VCLS THD DY+ ++E
Sbjct:  206 TMEQYRVQCL-HAELFDAAAGPQRDWFDPSFWAVFEGGAQPHAIRGLVEEVAPGIFQFPLFSDTFCEKLLDETLHYEASGLPVARPNSMNNYGVVLNAIGMERVMDLLQRSFVRPLANELFPTDGEHLDHHHTFMVQYKEGEDLGLDMHTDACDVTLNVCLGREFTGAGLTFCGVRGSGGADERKFVHRHEHVKGRAIMHLGHQRHGADDIKTGERYNLIMWNKSASFRLSKAFMQKYSTPPSSRGTPDLVCLSYTHDDDYETYKE 470          
BLAST of mRNA_S-firma_F_contig10199.309.1 vs. uniprot
Match: A0A7S2JIQ6_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2JIQ6_9EUKA)

HSP 1 Score: 231 bits (590), Expect = 2.870e-72
Identity = 123/245 (50.20%), Postives = 151/245 (61.63%), Query Frame = 1
Query:   70 QPEWFDPALLAALGDGSP--AALRSLVTEVTPGVFMLPFFTAAFCGMLMDELRAYEATPLEKTRPNSMNNYGLILNDMGLEGMMSALLEGYARPFAAELFPEAGSAVDHHHSFLVQYAPGQDTHLDMHIDDSEVTLNVSLTSEFTGAGLAFCG-NIHSTSHRKHSLTYAHRLGYAVIHLGRHRHGALHIEAGERVNLIMWMRSAELRRQPG----YTHISRVVGEEDPDAVCLSRTHDPDYDEWR 783
            Q  W  P+LLAA   G P  AA+ +L  +V PGV+   FF+  FC  ++ E+  YE + L  +RPNSMNNYG+++N +G+E  M AL   Y RP AA LFP  G  +DHHH+F+VQY  G+D  LDMH D  +VTLNV L  EFTGAGL FCG      + RK S  Y HR G AV+HLGRHRHGA  I  GER NLIMW +S+  R        Y H +       PD VCLS THD DY+E+R
Sbjct:   14 QSTWLAPSLLAAFASGPPDAAAVHALTEQVAPGVYAFDFFSREFCDQILCEMENYECSGLPVSRPNSMNNYGVVINSIGMERTMDALQREYVRPLAAALFPIEGDMIDHHHTFMVQYKQGEDLGLDMHTDACDVTLNVCLGKEFTGAGLTFCGLRGDGGNERKFSFRYEHRKGRAVMHLGRHRHGADDISTGERYNLIMWNKSSSFRSSRDFMSKYAHGASETTAP-PDLVCLSYTHDEDYEEYR 257          
BLAST of mRNA_S-firma_F_contig10199.309.1 vs. uniprot
Match: A0A0M0J773_9EUKA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J773_9EUKA)

HSP 1 Score: 229 bits (585), Expect = 9.310e-71
Identity = 128/272 (47.06%), Postives = 163/272 (59.93%), Query Frame = 1
Query:    1 RTINAYKPEMMAHPELFDTARGWQPEWFDPALLAALGDGSP--AALRSLVTEVTPGVFMLPFFTAAFCGMLMDELRAYEATPLEKTRPNSMNNYGLILNDMGLEGMMSALLEGYARPFAAELFPEAGSAVDHHHSFLVQYAPGQDTHLDMHIDDSEVTLNVSLTSEFTGAGLAFCGNIHSTSHRKHSLTYAHRLGYAVIHLGRHRHGALHIEAGERVNLIMWMRSAELRRQPGYTH-ISRVVGEE--DPDAVCLSRTHDPDYDEWREKFGGV 801
            +T  AY+  +  H ELF      QP WF P+  AA   G P  AA+R+LV EV+PGVF   F + +FC  L+ EL  Y+++ L   RPNSMN YG++LN +G+E  + AL   Y R  AA LFP  G  VDHHH+F+VQY  G+D  LDMH D  +VTLNV L  EFTGAGL FCG       R  S  + H  G A++H G HRHGA  I  GER NLI+W +S+  R    Y + ++R   +E   PD VCLS THD DY+++R    GV
Sbjct:   53 QTCAAYQ-SLCLHTELFQRP---QPSWFAPSFAAAFAHGPPTAAAVRALVEEVSPGVFAFDFLSPSFCERLLCELEHYDSSGLPVVRPNSMNRYGVVLNSIGMEKTIDALQRHYVRALAAALFPVEGEHVDHHHAFMVQYKHGEDLGLDMHTDACDVTLNVCLGKEFTGAGLTFCGLRGGGRERTFSYRHQHVKGRAIMHAGHHRHGADDILGGERYNLILWNKSSTFRASKDYMNKVARPEADEADKPDLVCLSYTHDDDYEKYRPLPAGV 320          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10199.309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4UWB1_9DINO3.660e-7850.57Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A6B2L3U1_9EUKA8.780e-7849.25Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A7S4P4C6_9EUKA2.840e-7649.63Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
A9V9W4_MONBE6.100e-7549.42Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A061QWD7_9CHLO2.640e-7447.86Prolyl 4-hydroxylase alpha subunit (Fragment) n=1 ... [more]
A0A7S3BJR9_9VIRI8.160e-7348.85Hypothetical protein n=1 Tax=Prasinoderma singular... [more]
A0A8J5X6X5_DIALT1.050e-7249.82Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A7S3BDV8_9EUKA2.280e-7248.12Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S2JIQ6_9EUKA2.870e-7250.20Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A0M0J773_9EUKA9.310e-7147.06Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10199contigS-firma_F_contig10199:1873..2743 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog81824.XP_001749508.1
Max annot lvl33154|Opisthokonta
Evalue3.65e-76
EggNOG OGsKOG1971@1|root,KOG1971@2759|Eukaryota,38HYK@33154|Opisthokonta
Description2-oxoglutarate and iron-dependent oxygenase
COG categoryO
Hectar predicted targeting categoryother localisation
Exons2
Model size810
Cds size783
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10199.309.1prot_S-firma_F_contig10199.309.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10199 1900..2743 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815547.7561288-UTR-S-firma_F_contig10199:1872..18991622815547.7561288-UTR-S-firma_F_contig10199:1872..1899Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10199 1873..1899 +
1696949407.2335489-UTR-S-firma_F_contig10199:1872..18991696949407.2335489-UTR-S-firma_F_contig10199:1872..1899Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10199 1873..1899 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815547.7675996-CDS-S-firma_F_contig10199:1899..21371622815547.7675996-CDS-S-firma_F_contig10199:1899..2137Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10199 1900..2137 +
1696949407.2452521-CDS-S-firma_F_contig10199:1899..21371696949407.2452521-CDS-S-firma_F_contig10199:1899..2137Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10199 1900..2137 +
1622815547.7814486-CDS-S-firma_F_contig10199:2198..27431622815547.7814486-CDS-S-firma_F_contig10199:2198..2743Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10199 2199..2743 +
1696949407.2562914-CDS-S-firma_F_contig10199:2198..27431696949407.2562914-CDS-S-firma_F_contig10199:2198..2743Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10199 2199..2743 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10199.309.1

>prot_S-firma_F_contig10199.309.1 ID=prot_S-firma_F_contig10199.309.1|Name=mRNA_S-firma_F_contig10199.309.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=261bp
MMAHPELFDTARGWQPEWFDPALLAALGDGSPAALRSLVTEVTPGVFMLP
FFTAAFCGMLMDELRAYEATPLEKTRPNSMNNYGLILNDMGLEGMMSALL
EGYARPFAAELFPEAGSAVDHHHSFLVQYAPGQDTHLDMHIDDSEVTLNV
SLTSEFTGAGLAFCGNIHSTSHRKHSLTYAHRLGYAVIHLGRHRHGALHI
EAGERVNLIMWMRSAELRRQPGYTHISRVVGEEDPDAVCLSRTHDPDYDE
WREKFGGVPA*
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mRNA from alignment at S-firma_F_contig10199:1873..2743+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10199.309.1 ID=mRNA_S-firma_F_contig10199.309.1|Name=mRNA_S-firma_F_contig10199.309.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=871bp|location=Sequence derived from alignment at S-firma_F_contig10199:1873..2743+ (Sphaerotrichia firma ET2_F female)
CGCACCATCAACGCGTACAAACCGGAGATGATGGCCCACCCGGAGCTGTT TGACACCGCAAGGGGGTGGCAGCCGGAGTGGTTTGATCCCGCACTGTTGG CAGCGTTGGGCGACGGGTCCCCAGCGGCGCTGCGGTCGCTCGTGACGGAG GTGACGCCCGGCGTGTTCATGCTGCCGTTTTTCACGGCGGCGTTTTGCGG CATGCTCATGGACGAACTGAGAGCGTACGAGGCGACACCCTTGGAGAAGA CCCGGCCCAACAGCAGTGCGTGATTGTGTGTGGAGAGCACCCCCCCTCCC AAAAACCAAATCCCCCAACACGGCAGTGAACAACTACGGCCTCATTTTGA ACGACATGGGGCTGGAGGGCATGATGTCGGCGCTGCTGGAGGGCTACGCG CGGCCGTTTGCGGCGGAGCTGTTCCCCGAGGCGGGGTCTGCCGTGGACCA CCACCACTCCTTCTTGGTGCAGTACGCCCCCGGGCAGGACACCCACCTGG ACATGCACATTGACGACTCGGAGGTCACCCTGAACGTCAGCCTGACGTCG GAGTTCACGGGGGCGGGCCTGGCCTTCTGCGGCAACATCCACAGCACCTC CCACCGCAAGCACAGCCTGACGTACGCCCACAGGCTGGGGTACGCCGTGA TTCACTTGGGGCGCCACCGCCACGGCGCCCTCCACATCGAAGCCGGCGAA CGCGTGAACCTCATCATGTGGATGCGGTCGGCGGAGCTGCGGCGGCAGCC CGGGTACACCCACATCTCCAGGGTGGTGGGGGAGGAGGACCCGGACGCGG TGTGCCTCAGCCGCACGCACGACCCGGACTACGATGAGTGGAGAGAGAAG TTTGGCGGCGTCCCCGCTTGA
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Coding sequence (CDS) from alignment at S-firma_F_contig10199:1873..2743+

>mRNA_S-firma_F_contig10199.309.1 ID=mRNA_S-firma_F_contig10199.309.1|Name=mRNA_S-firma_F_contig10199.309.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1566bp|location=Sequence derived from alignment at S-firma_F_contig10199:1873..2743+ (Sphaerotrichia firma ET2_F female)
ATGATGGCCCACCCGGAGCTGTTTGACACCGCAAGGGGGTGGCAGCCGGA
GTGGTTTGATCCCGCACTGTTGGCAGCGTTGGGCGACGGGTCCCCAGCGG
CGCTGCGGTCGCTCGTGACGGAGGTGACGCCCGGCGTGTTCATGCTGCCG
TTTTTCACGGCGGCGTTTTGCGGCATGCTCATGGACGAACTGAGAGCGTA
CGAGGCGACACCCTTGGAGAAGACCCGGCCCAACAGCAATGATGGCCCAC
CCGGAGCTGTTTGACACCGCAAGGGGGTGGCAGCCGGAGTGGTTTGATCC
CGCACTGTTGGCAGCGTTGGGCGACGGGTCCCCAGCGGCGCTGCGGTCGC
TCGTGACGGAGGTGACGCCCGGCGTGTTCATGCTGCCGTTTTTCACGGCG
GCGTTTTGCGGCATGCTCATGGACGAACTGAGAGCGTACGAGGCGACACC
CTTGGAGAAGACCCGGCCCAACAGCATGAACAACTACGGCCTCATTTTGA
ACGACATGGGGCTGGAGGGCATGATGTCGGCGCTGCTGGAGGGCTACGCG
CGGCCGTTTGCGGCGGAGCTGTTCCCCGAGGCGGGGTCTGCCGTGGACCA
CCACCACTCCTTCTTGGTGCAGTACGCCCCCGGGCAGGACACCCACCTGG
ACATGCACATTGACGACTCGGAGGTCACCCTGAACGTCAGCCTGACGTCG
GAGTTCACGGGGGCGGGCCTGGCCTTCTGCGGCAACATCCACAGCACCTC
CCACCGCAAGCACAGCCTGACGTACGCCCACAGGCTGGGGTACGCCGTGA
TTCACTTGGGGCGCCACCGCCACGGCGCCCTCCACATCGAAGCCGGCGAA
CGCGTGAACCTCATCATGTGGATGCGGTCGGCGGAGCTGCGGCGGCAGCC
CGGGTACACCCACATCTCCAGGGTGGTGGGGGAGGAGGACCCGGACGCGG
TGTGCCTCAGCCGCACGCACGACCCGGACTACGATGAGTGGAGAGAGAAG
TTTGGCGGCGTCCCCGCTTGATGAACAACTACGGCCTCATTTTGAACGAC
ATGGGGCTGGAGGGCATGATGTCGGCGCTGCTGGAGGGCTACGCGCGGCC
GTTTGCGGCGGAGCTGTTCCCCGAGGCGGGGTCTGCCGTGGACCACCACC
ACTCCTTCTTGGTGCAGTACGCCCCCGGGCAGGACACCCACCTGGACATG
CACATTGACGACTCGGAGGTCACCCTGAACGTCAGCCTGACGTCGGAGTT
CACGGGGGCGGGCCTGGCCTTCTGCGGCAACATCCACAGCACCTCCCACC
GCAAGCACAGCCTGACGTACGCCCACAGGCTGGGGTACGCCGTGATTCAC
TTGGGGCGCCACCGCCACGGCGCCCTCCACATCGAAGCCGGCGAACGCGT
GAACCTCATCATGTGGATGCGGTCGGCGGAGCTGCGGCGGCAGCCCGGGT
ACACCCACATCTCCAGGGTGGTGGGGGAGGAGGACCCGGACGCGGTGTGC
CTCAGCCGCACGCACGACCCGGACTACGATGAGTGGAGAGAGAAGTTTGG
CGGCGTCCCCGCTTGA
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