mRNA_S-firma_F_contig10198.308.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10198.308.1
Unique NamemRNA_S-firma_F_contig10198.308.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10198.308.1 vs. uniprot
Match: A0A6H5LQU7_9PHAE (Methyltransf_11 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LQU7_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 2.630e-56
Identity = 87/96 (90.62%), Postives = 95/96 (98.96%), Query Frame = 1 
Query:    1 ITRINKAYYLPRWCSTADYVKYFEDEGLVDVKRADWTDNIQNFWPAVIRSSVSFKGIVGLLKSGPVTIRGAIAMVLMVRGYKKGLVKFALITGKKP 288
            + +INKAYYLPRWCST+DYVKYFEDEGLVD+KRADWTDNIQNFWPAVIRSSVSF+GIVGLLKSGPVTIRGA+AM+LMVRGYK+GLVKFALITGKKP
Sbjct:  300 LAKINKAYYLPRWCSTSDYVKYFEDEGLVDIKRADWTDNIQNFWPAVIRSSVSFQGIVGLLKSGPVTIRGAVAMLLMVRGYKRGLVKFALITGKKP 395
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BLAST of mRNA_S-firma_F_contig10198.308.1 vs. uniprot
Match: A0A7S2UZA4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZA4_9STRA)

HSP 1 Score: 137 bits (346), Expect = 4.320e-39
Identity = 63/96 (65.62%), Postives = 77/96 (80.21%), Query Frame = 1 
Query:    1 ITRINKAYYLPRWCSTADYVKYFEDEGLVDVKRADWTDNIQNFWPAVIRSSVSFKGIVGLLKSGPVTIRGAIAMVLMVRGYKKGLVKFALITGKKP 288
            + RIN+AYYLP WCS ADYV   +  GL D+KRADWT+ I+ FWPAVIRSS+SF+G+ GL +SGP T RGA+AM+LM+RGY KGL+KF LIT  KP
Sbjct:   93 LARINRAYYLPDWCSVADYVTLMKAAGLEDIKRADWTEYIKPFWPAVIRSSLSFRGLRGLWRSGPRTSRGALAMILMIRGYNKGLIKFGLITAAKP 188
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BLAST of mRNA_S-firma_F_contig10198.308.1 vs. uniprot
Match: A0A836C920_9STRA (Gamma-tocopherol methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C920_9STRA)

HSP 1 Score: 136 bits (343), Expect = 3.320e-37
Identity = 63/96 (65.62%), Postives = 78/96 (81.25%), Query Frame = 1 
Query:    1 ITRINKAYYLPRWCSTADYVKYFEDEGLVDVKRADWTDNIQNFWPAVIRSSVSFKGIVGLLKSGPVTIRGAIAMVLMVRGYKKGLVKFALITGKKP 288
            +  INKAYYLP+WCS ADYV Y ++ GL DV+R DWTD IQ FWPAVI+SS+S +GI GL+++GP  IRGA+AM+LMVRG+K  LVKF LIT +KP
Sbjct:  218 LAAINKAYYLPKWCSVADYVTYCQEAGLTDVRRDDWTDKIQYFWPAVIKSSLSGRGIRGLVRAGPGIIRGALAMLLMVRGFKLNLVKFGLITARKP 313
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BLAST of mRNA_S-firma_F_contig10198.308.1 vs. uniprot
Match: A0A388L934_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L934_CHABU)

HSP 1 Score: 128 bits (321), Expect = 4.980e-36
Identity = 62/96 (64.58%), Postives = 75/96 (78.12%), Query Frame = 1 
Query:    1 ITRINKAYYLPRWCSTADYVKYFEDEGLVDVKRADWTDNIQNFWPAVIRSSVSFKGIVGLLKSGPVTIRGAIAMVLMVRGYKKGLVKFALITGKKP 288
            + RI  AYYLP WCST DYVK  +D GL D++ ADWT+ I  FWPAVI S++S +G+VGLL+SG  TIRGA+ M LMV GYKKGL+KFALIT +KP
Sbjct:   39 LKRICDAYYLPAWCSTDDYVKIAKDLGLEDIQTADWTEFIAPFWPAVIESAISVQGLVGLLRSGLKTIRGALVMRLMVEGYKKGLIKFALITCRKP 134
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BLAST of mRNA_S-firma_F_contig10198.308.1 vs. uniprot
Match: A0A6S9IJ58_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9IJ58_HETAK)

HSP 1 Score: 132 bits (333), Expect = 1.600e-35
Identity = 61/97 (62.89%), Postives = 76/97 (78.35%), Query Frame = 1 
Query:    1 ITRINKAYYLPRWCSTADYVKYFEDEGLVDVKRADWTDNIQNFWPAVIRSSV-SFKGIVGLLKSGPVTIRGAIAMVLMVRGYKKGLVKFALITGKKP 288
            + RINKAYYLPRWCS ADYV Y E  GL D+K ADWTD IQ FWPAV+RS++ S +   G+L+SGP T+RGA+AM+ M++GY +GL+KF LIT  KP
Sbjct:  246 LNRINKAYYLPRWCSVADYVAYAEAAGLADIKTADWTDRIQAFWPAVVRSALGSPRNFWGMLRSGPKTVRGALAMLWMIQGYNRGLIKFGLITATKP 342
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BLAST of mRNA_S-firma_F_contig10198.308.1 vs. uniprot
Match: UPI000C1CDAFA (probable tocopherol O-methyltransferase, chloroplastic n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1CDAFA)

HSP 1 Score: 124 bits (312), Expect = 1.380e-34
Identity = 56/96 (58.33%), Postives = 75/96 (78.12%), Query Frame = 1 
Query:    1 ITRINKAYYLPRWCSTADYVKYFEDEGLVDVKRADWTDNIQNFWPAVIRSSVSFKGIVGLLKSGPVTIRGAIAMVLMVRGYKKGLVKFALITGKKP 288
            + +I  A+YLP WCSTADYVK  E   L D+K ADW++ +  FWPAVI+S++++KGI  LL+SG  TI+GA+AM LM+ GYKKGL+KFA+IT +KP
Sbjct:   52 LNKICNAFYLPAWCSTADYVKLLESLSLQDIKAADWSEYVAPFWPAVIKSALTWKGITSLLRSGWKTIKGALAMPLMIEGYKKGLIKFAIITSRKP 147
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BLAST of mRNA_S-firma_F_contig10198.308.1 vs. uniprot
Match: A0A2G9H9V6_9LAMI (Tocopherol O-methyltransferase n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9H9V6_9LAMI)

HSP 1 Score: 124 bits (310), Expect = 2.770e-33
Identity = 57/96 (59.38%), Postives = 74/96 (77.08%), Query Frame = 1 
Query:    1 ITRINKAYYLPRWCSTADYVKYFEDEGLVDVKRADWTDNIQNFWPAVIRSSVSFKGIVGLLKSGPVTIRGAIAMVLMVRGYKKGLVKFALITGKKP 288
            + +I  AYYLP WCSTADYVK  +   L D+K ADW+  +  FWPAVI+S++++KGI  LL+SG  TIRGA AM LM++GYKKGL+KFA+IT +KP
Sbjct:  137 LNKICDAYYLPAWCSTADYVKLLQSLSLEDIKAADWSQYVAPFWPAVIKSALTWKGITSLLRSGWKTIRGAFAMPLMIKGYKKGLIKFAIITCRKP 232
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BLAST of mRNA_S-firma_F_contig10198.308.1 vs. uniprot
Match: F6HEC5_VITVI (Methyltransf_11 domain-containing protein n=5 Tax=Vitis TaxID=3603 RepID=F6HEC5_VITVI)

HSP 1 Score: 124 bits (312), Expect = 1.620e-32
Identity = 57/96 (59.38%), Postives = 73/96 (76.04%), Query Frame = 1 
Query:    1 ITRINKAYYLPRWCSTADYVKYFEDEGLVDVKRADWTDNIQNFWPAVIRSSVSFKGIVGLLKSGPVTIRGAIAMVLMVRGYKKGLVKFALITGKKP 288
            + +I  AYYLP WCST DYVK  E   L D+K ADW++ +  FWPAVIRS+++FKG + LL+SG  TIRGA+ M LM+RGYK GL+KFA+IT +KP
Sbjct:  249 LDKICSAYYLPDWCSTTDYVKLLESLSLQDIKAADWSEYVAPFWPAVIRSALTFKGFISLLRSGWKTIRGALVMPLMIRGYKMGLIKFAIITCRKP 344
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BLAST of mRNA_S-firma_F_contig10198.308.1 vs. uniprot
Match: A0A0D6QZ18_ARACU (Methyltransf_11 domain-containing protein n=2 Tax=Araucariaceae TaxID=25664 RepID=A0A0D6QZ18_ARACU)

HSP 1 Score: 125 bits (313), Expect = 1.740e-32
Identity = 56/96 (58.33%), Postives = 75/96 (78.12%), Query Frame = 1 
Query:    1 ITRINKAYYLPRWCSTADYVKYFEDEGLVDVKRADWTDNIQNFWPAVIRSSVSFKGIVGLLKSGPVTIRGAIAMVLMVRGYKKGLVKFALITGKKP 288
            + +I KAYYLP WCS +DYVK  +   L D+K ADW+DN+  FWPAVIRS+ S++ I G+L+SG  T++GA AM LMV+GYK+GL+KFA+IT +KP
Sbjct:  272 LDKICKAYYLPAWCSPSDYVKLAQASSLQDIKTADWSDNVAPFWPAVIRSAFSWRAIAGVLRSGWKTLKGAFAMTLMVKGYKQGLIKFAVITARKP 367
[Close]
BLAST of mRNA_S-firma_F_contig10198.308.1 vs. uniprot
Match: A0A2C9VI00_MANES (Methyltransf_11 domain-containing protein n=1 Tax=Manihot esculenta TaxID=3983 RepID=A0A2C9VI00_MANES)

HSP 1 Score: 124 bits (312), Expect = 1.770e-32
Identity = 56/96 (58.33%), Postives = 74/96 (77.08%), Query Frame = 1 
Query:    1 ITRINKAYYLPRWCSTADYVKYFEDEGLVDVKRADWTDNIQNFWPAVIRSSVSFKGIVGLLKSGPVTIRGAIAMVLMVRGYKKGLVKFALITGKKP 288
            + +I  AYYLP WCS ADYV+  E   L D+K ADW+ N+  FWPAVIRS++++KG+  LL+SG  TIRGA+ M LM++GYKKGL+KFA+IT +KP
Sbjct:  254 LKKICDAYYLPEWCSAADYVEILESLSLQDIKTADWSQNVAPFWPAVIRSALTWKGLTSLLRSGMKTIRGALVMPLMIQGYKKGLIKFAIITCRKP 349
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10198.308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LQU7_9PHAE2.630e-5690.63Methyltransf_11 domain-containing protein n=2 Tax=... [more]
A0A7S2UZA4_9STRA4.320e-3965.63Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A836C920_9STRA3.320e-3765.63Gamma-tocopherol methyltransferase n=1 Tax=Tribone... [more]
A0A388L934_CHABU4.980e-3664.58Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A6S9IJ58_HETAK1.600e-3562.89Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
UPI000C1CDAFA1.380e-3458.33probable tocopherol O-methyltransferase, chloropla... [more]
A0A2G9H9V6_9LAMI2.770e-3359.38Tocopherol O-methyltransferase n=1 Tax=Handroanthu... [more]
F6HEC5_VITVI1.620e-3259.38Methyltransf_11 domain-containing protein n=5 Tax=... [more]
A0A0D6QZ18_ARACU1.740e-3258.33Methyltransf_11 domain-containing protein n=2 Tax=... [more]
A0A2C9VI00_MANES1.770e-3258.33Methyltransf_11 domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10198contigS-firma_F_contig10198:2552..3567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LHY0
Preferred nameTMT
PFAMsCMAS,Methyltransf_11
Max annot lvl2759|Eukaryota
KEGG rclassRC00003,RC01662
KEGG koko:K05928
KEGG ReactionR07236,R07504,R10491,R10492
KEGG Pathwayko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG ModuleM00112
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006766,GO:0006775,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0009058,GO:0009110,GO:0009507,GO:0009536,GO:0009987,GO:0010189,GO:0016740,GO:0016741,GO:0018130,GO:0032259,GO:0042360,GO:0042362,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050342,GO:0071704,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617
Evalue1.71e-56
EggNOG OGsCOG0500@1|root,KOG1269@2759|Eukaryota
EC2.1.1.95
Descriptionsterol 24-C-methyltransferase activity
COG categoryQ
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons3
Model size291
Cds size291
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10198.308.1prot_S-firma_F_contig10198.308.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10198 2552..3567 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815547.6979396-CDS-S-firma_F_contig10198:2551..26171622815547.6979396-CDS-S-firma_F_contig10198:2551..2617Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10198 2552..2617 -
1696949407.1834502-CDS-S-firma_F_contig10198:2551..26171696949407.1834502-CDS-S-firma_F_contig10198:2551..2617Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10198 2552..2617 -
1622815547.7086062-CDS-S-firma_F_contig10198:3108..32101622815547.7086062-CDS-S-firma_F_contig10198:3108..3210Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10198 3109..3210 -
1696949407.2118251-CDS-S-firma_F_contig10198:3108..32101696949407.2118251-CDS-S-firma_F_contig10198:3108..3210Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10198 3109..3210 -
1622815547.72096-CDS-S-firma_F_contig10198:3444..35671622815547.72096-CDS-S-firma_F_contig10198:3444..3567Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10198 3445..3567 -
1696949407.222988-CDS-S-firma_F_contig10198:3444..35671696949407.222988-CDS-S-firma_F_contig10198:3444..3567Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10198 3445..3567 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10198.308.1

>prot_S-firma_F_contig10198.308.1 ID=prot_S-firma_F_contig10198.308.1|Name=mRNA_S-firma_F_contig10198.308.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=97bp
ITRINKAYYLPRWCSTADYVKYFEDEGLVDVKRADWTDNIQNFWPAVIRS
SVSFKGIVGLLKSGPVTIRGAIAMVLMVRGYKKGLVKFALITGKKP*
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mRNA from alignment at S-firma_F_contig10198:2552..3567-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10198.308.1 ID=mRNA_S-firma_F_contig10198.308.1|Name=mRNA_S-firma_F_contig10198.308.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1016bp|location=Sequence derived from alignment at S-firma_F_contig10198:2552..3567- (Sphaerotrichia firma ET2_F female)
ATCACCAGAATCAACAAGGCATACTACCTTCCTCGATGGTGCTCCACCGC
CGACTATGTCAAGTACTTCGAAGACGAGGGGCTCGTGGATGTCAAGAGAG
CAGACTGGACAGACAACATTCAGGTCAGAGCCTACTCATACCAGGCGTTC
GCAGCTTGCAAGTTGCGTCGATGAAAGGGCTAGCAAATGGCGGTATGACA
CGGGGCGCCACATCGGCTGGAGCAAGTTGAATTTGCCCAGAGCATTGCAC
CGGTCCACCCGGGAAGGTTGTCCACCGATTTCCAACCCATCTCCAACCCG
CAAGAAATGTTTGCTTTCGCGCTTCGACCTGCGGATACTCTGTGCATTTT
CGCGCAGAATTTCTGGCCGGCGGTGATTCGCTCTTCCGTGTCTTTCAAGG
GCATTGTTGGCTTGCTCAAGTCTGGACCTGTGACCATCCGCGGTGCGATT
GCCATGGTGGTGAGTAGAGTACAACGGTTGATACCCAGCTGCGGTGTCTT
CACCTGGTCACTGTAGCCTAATGTGTGGAACTTGCGAACCAATATTTCCA
AACTCTACTAGGCCCGTGAGTTATCAGAAGGGACCAACCAGGGTCTGGGG
CATGGCGTCTATTTGTTTTGTACGAAACTCGCACAACGTGCACGAGGGCA
CGAGGGCAGAGTCGCACGGGTCGTTCTTCCAAGGGGAGCCTTCTCGGAAC
GTCTTGCGGTGTAGACTCGAAAGCTTACGGATCCTGATGAACCCTCTAGC
GCAGTTGTAGAGGATTTCGAGCGAGCGTTGGTTTGGCAGTACGAACACAA
ACACTCCCAACGAGTGCAGCCCATTCGATGATGCGTTGCTTTCGCTCGGA
CACCGCGCCAGTTCCCTTTGTCCCAACGTCTTCCTTGACTCCCCCACCGA
CGCTTGCTTGCCTTGCTTGCGTTGCTTTCCTAACTTGTATGATGATGCAG
CTGATGGTCCGAGGATACAAGAAGGGCCTCGTCAAGTTTGCCCTCATCAC
GGGCAAGAAACCGTAG
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Coding sequence (CDS) from alignment at S-firma_F_contig10198:2552..3567-

>mRNA_S-firma_F_contig10198.308.1 ID=mRNA_S-firma_F_contig10198.308.1|Name=mRNA_S-firma_F_contig10198.308.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=582bp|location=Sequence derived from alignment at S-firma_F_contig10198:2552..3567- (Sphaerotrichia firma ET2_F female)
ATCACCAGAATCAACAAGGCATACTACCTTCCTCGATGGTGCTCCACCGC
CGACTATGTCAAGTACTTCGAAGACGAGGGGCTCGTGGATGTCAAGAGAG
CAGACTGGACAGACAACATTCAGATCACCAGAATCAACAAGGCATACTAC
CTTCCTCGATGGTGCTCCACCGCCGACTATGTCAAGTACTTCGAAGACGA
GGGGCTCGTGGATGTCAAGAGAGCAGACTGGACAGACAACATTCAGAATT
TCTGGCCGGCGGTGATTCGCTCTTCCGTGTCTTTCAAGGGCATTGTTGGC
TTGCTCAAGTCTGGACCTGTGACCATCCGCGGTGCGATTGCCATGGTGAA
TTTCTGGCCGGCGGTGATTCGCTCTTCCGTGTCTTTCAAGGGCATTGTTG
GCTTGCTCAAGTCTGGACCTGTGACCATCCGCGGTGCGATTGCCATGGTG
CTGATGGTCCGAGGATACAAGAAGGGCCTCGTCAAGTTTGCCCTCATCAC
GGGCAAGAAACCGTAGCTGATGGTCCGAGGATACAAGAAGGGCCTCGTCA
AGTTTGCCCTCATCACGGGCAAGAAACCGTAG
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