mRNA_S-firma_F_contig1019.299.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1019.299.1
Unique NamemRNA_S-firma_F_contig1019.299.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig1019.299.1 vs. uniprot
Match: D7FKM0_ECTSI (HECT-type E3 ubiquitin transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKM0_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 5.610e-16
Identity = 83/157 (52.87%), Postives = 89/157 (56.69%), Query Frame = -1 
Query:    1 EVEAMAAAAGRLADPVVVGRLFDSILPPISRFSSQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGPSADDEDPVLALCSLYADLVMDGVRAGAAAAKGSVSPGKS------------------VLNALAFGR 417
            E+EAMAAAAGRLADPVVVGRLFDSILPP++R SS+               XXXXXXXXXXXXXXXXXXX                    G   DD+DPVLALCSLYADLVMDGVRA  +AA                           VLNALAFGR
Sbjct:  664 EIEAMAAAAGRLADPVVVGRLFDSILPPVARSSSEGQQTGLGGGSRAEASXXXXXXXXXXXXXXXXXXXLAGDAK--------------GDDNDDDDPVLALCSLYADLVMDGVRAAGSAAAXXXXXXXXXXXXXXXXXXXXXXXXXXVLNALAFGR 806
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1019.299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKM0_ECTSI5.610e-1652.87HECT-type E3 ubiquitin transferase n=2 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1019contigS-firma_F_contig1019:25197..25667 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size421
Cds size342
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1019.299.1prot_S-firma_F_contig1019.299.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1019 25275..25667 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815546.5870755-UTR-S-firma_F_contig1019:25196..252741622815546.5870755-UTR-S-firma_F_contig1019:25196..25274Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1019 25197..25274 -
1696949406.4961152-UTR-S-firma_F_contig1019:25196..252741696949406.4961152-UTR-S-firma_F_contig1019:25196..25274Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1019 25197..25274 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815546.600415-CDS-S-firma_F_contig1019:25274..255491622815546.600415-CDS-S-firma_F_contig1019:25274..25549Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1019 25275..25549 -
1696949406.5045164-CDS-S-firma_F_contig1019:25274..255491696949406.5045164-CDS-S-firma_F_contig1019:25274..25549Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1019 25275..25549 -
1622815546.6101604-CDS-S-firma_F_contig1019:25600..256671622815546.6101604-CDS-S-firma_F_contig1019:25600..25667Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1019 25601..25667 -
1696949406.512733-CDS-S-firma_F_contig1019:25600..256671696949406.512733-CDS-S-firma_F_contig1019:25600..25667Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1019 25601..25667 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1019.299.1

>prot_S-firma_F_contig1019.299.1 ID=prot_S-firma_F_contig1019.299.1|Name=mRNA_S-firma_F_contig1019.299.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=114bp
PPERERVQHGLPRRHGALGGGGARPHAVHDQVRVERAQGEDGVFVVGAWP
AVAAAAAAAAATATAGAGAGAEELDFRCCRRRFRRGRAVGLPLLLLLLLL
LLFLLRREPRYRG*
back to top

mRNA from alignment at S-firma_F_contig1019:25197..25667-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1019.299.1 ID=mRNA_S-firma_F_contig1019.299.1|Name=mRNA_S-firma_F_contig1019.299.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=471bp|location=Sequence derived from alignment at S-firma_F_contig1019:25197..25667- (Sphaerotrichia firma ET2_F female)
CCTCCCGAACGCGAGCGCGTTCAGCACGGACTTCCCCGGCGACACGGAGC
CCTTGGCGGCGGCGGCGGCGGGGGAGGAGTCGGCCGACGTCCCGCCGGCG
GCGGCAGCGGCGGCGGAGCCCGCCCGCACGCCGTCCATGACCAGGTCCGC
GTAGAGCGAGCACAGGGCGAGGACGGGGTCTTCGTCGTCGGCGCTTGGCC
CGCCGTGGCTGCTGCTGCTGCTGCTGCCGCCGCCACCGCCACCGCCGGTG
CCGGCGCCGGCGCGGAGGAGCTCGACTTCCGGTGTTGCCGCCGCCGCTTC
CGACGAGGAAGGGCCGTCGGCCTGCCGCTGCTGTTGCTGTTGCTGTTGCT
GCTGCTGTTTCTGCTGAGACGAGAACCGAGATATCGGGGGTAGGATGCTG
TCGAACAGCCTGCCCACGACGACGGGGTCTGCGAGCCTCCCCGCCGCCGC
CGCCATCGCCTCCACCTCGCC
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig1019:25197..25667-

>mRNA_S-firma_F_contig1019.299.1 ID=mRNA_S-firma_F_contig1019.299.1|Name=mRNA_S-firma_F_contig1019.299.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=684bp|location=Sequence derived from alignment at S-firma_F_contig1019:25197..25667- (Sphaerotrichia firma ET2_F female)
CCTCCCGAACGCGAGCGCGTTCAGCACGGACTTCCCCGGCGACACGGAGC
CCTTGGCGGCGGCGGCGCCTCCCGAACGCGAGCGCGTTCAGCACGGACTT
CCCCGGCGACACGGAGCCCTTGGCGGCGGCGGCGCCCGCCCGCACGCCGT
CCATGACCAGGTCCGCGTAGAGCGAGCACAGGGCGAGGACGGGGTCTTCG
TCGTCGGCGCTTGGCCCGCCGTGGCTGCTGCTGCTGCTGCTGCCGCCGCC
ACCGCCACCGCCGGTGCCGGCGCCGGCGCGGAGGAGCTCGACTTCCGGTG
TTGCCGCCGCCGCTTCCGACGAGGAAGGGCCGTCGGCCTGCCGCTGCTGT
TGCTGTTGCTGTTGCTGCTGCTGTTTCTGCTGAGACGAGAACCGAGATAT
CGGGGGTAGCCCGCCCGCACGCCGTCCATGACCAGGTCCGCGTAGAGCGA
GCACAGGGCGAGGACGGGGTCTTCGTCGTCGGCGCTTGGCCCGCCGTGGC
TGCTGCTGCTGCTGCTGCCGCCGCCACCGCCACCGCCGGTGCCGGCGCCG
GCGCGGAGGAGCTCGACTTCCGGTGTTGCCGCCGCCGCTTCCGACGAGGA
AGGGCCGTCGGCCTGCCGCTGCTGTTGCTGTTGCTGTTGCTGCTGCTGTT
TCTGCTGAGACGAGAACCGAGATATCGGGGGTAG
back to top