mRNA_S-firma_F_contig1019.296.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig1019.296.1 vs. uniprot
Match: A0A6H5KNU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU3_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 1.220e-13 Identity = 93/270 (34.44%), Postives = 121/270 (44.81%), Query Frame = 3
Query: 612 ARGARVNAADKEGGTPLCRAAKHGRLAVVQALLAGLTKPDACT---AWYGRSRLLPNTTMR-TSC--ERFIESGSDVNYVDIDGRTALQSAVLCLGSEVIDVLVEAAGASLEQRNVMGCAPLHIAVRKEGRLEAALALLRNGADVNVARTGFKEGEMPLHTAARRGYLVPQGRGRAGGTWHHRGXXXXXXXXXXXXXXXXRRGHRAAVDISDADFNG---PRDLQEVERARKFLVNASADRAWRRRGHLVLCRAHPERAQLRLESGQSDA 1394
A GA+ N D +G TPL A ++G L+ V+ALLA PD W +L + +C ++ G DVN DG T+L A L IDVLVEA GA +E + C P A EAALAL ++GA++ GE PL AAR+ GR G T R A ++ P + Q++ER R L NA ADRAWRRRG LVLCRA +++ RL + S A
Sbjct: 108 AEGAKKNGLDAQGRTPLHLAVENGHLSTVKALLAA--DPDTSVHYRIWNRSYSVLDFAAQKGDACVLRAILQHGVDVNR-RTDGYTSLHVAALNNRVAAIDVLVEA-GAHVEVEDDDDCTPFLDACSNHCH-EAALALFKHGANIEARDM---RGETPLIIAARQA-------GRQGVT-----AIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDLERVRDLLENAPADRAWRRRGLLVLCRAFWIKSR-RLRAASSSA 356
BLAST of mRNA_S-firma_F_contig1019.296.1 vs. uniprot
Match: D7G6X8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X8_ECTSI) HSP 1 Score: 84.7 bits (208), Expect = 1.370e-13 Identity = 107/340 (31.47%), Postives = 145/340 (42.65%), Query Frame = 3
Query: 612 ARGARVNAADKEGGTPLCRAAKHGRLAVVQALLAGLTKPDACTAW--YGRSRLLPNTTMRT--SC--ERFIESGSDVNYVDIDGRTALQSAVLCLGSEVIDVLVEAAGASLEQRNVMGCAPLHIAVRKEGRLEAALALLRNGADVNVARTGFKEGEMPLHTAARRGYLVPQGRGRAGGTWHHRGXXXXXXXXXXXXXXXXRRGHRAAVDISDADFNG---PRDLQEVERARKFLVNASADRAWRRRGHLVLCRAHPERAQLRLESGQSDAGMATGRLVAALAWQG*RGVQASIAEAPEKVAS*RMVATLAEQRLGR*G-------WRRTACSGQSLGTCE 1583
A GA+ N D +G TPL A ++G L+ V+ALLA PD + + RS + + + +C ++ G DVN DG T+L A L IDVLVEA GA +E + C P A EAALAL ++G+++ GE PL AAR+ GR G T R A ++ P + Q+VER R L NA DRAWRRRG LVLCRA +A+ RL + S+A R+ + G + E +K + L +G WRR CS S +CE
Sbjct: 59 AGGAKKNGLDAQGRTPLHLAVENGHLSTVKALLAA--DPDTSVRYRIWNRSYSVLDLAAQKGDACVLRAILQHGVDVNR-RTDGYTSLHVAALNNRVAAIDVLVEA-GAHVEVEDDDDCTPFLDACINHCH-EAALALYKHGSNIEARDI---RGETPLIIAARQA-------GRQGVT-----AIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDVERVRDLLENAPVDRAWRRRGFLVLCRAFWIKAR-RLRAASSNASSNGPRVRSLSTGARISGAGGELREDDDKGRR-KQGCGLVGGGVGERNVQAKCWSWRRRVCSAPSWVSCE 376
BLAST of mRNA_S-firma_F_contig1019.296.1 vs. uniprot
Match: A0A6H5JHY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY9_9PHAE) HSP 1 Score: 75.5 bits (184), Expect = 2.410e-10 Identity = 66/179 (36.87%), Postives = 83/179 (46.37%), Query Frame = 3
Query: 813 GSDVNYVDIDGRTALQSAVLCLGSEVIDVLVEAAGASLEQRNVMGCAPLHIAVRKEGRLEAALALLRNGADVNVARTGFKEGEMPLHTAARRGYLVPQGRGRAGGTWHHRGXXXXXXXXXXXXXXXXRRGHRAAVDISDADFNGPRDLQEVERARKFLVNASADRAWRRRGHLVLCRAH 1349
G DVN +G TAL+ A + IDVL EA GA++E + G PLH+A +EGRL A +ALLR+GA V + PLH A + G RG GH AA + ++V+R RK L A ADRAWRRRG L+L RAH
Sbjct: 547 GGDVNAKVNNGITALRVASAFDKAPAIDVLTEA-GANIEAQ-ANGSTPLHVA-SQEGRLAAGIALLRHGASVGKKNAAA---QTPLHLVAAK--AGSPGTAEMVDLLLRRGADETAVS---------ENGHTAADMVVLKTEESDSLAEDVDRVRKLLARAPADRAWRRRGFLILSRAH 708
BLAST of mRNA_S-firma_F_contig1019.296.1 vs. uniprot
Match: D7FKL4_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKL4_ECTSI) HSP 1 Score: 71.2 bits (173), Expect = 2.050e-9 Identity = 65/190 (34.21%), Postives = 81/190 (42.63%), Query Frame = 3
Query: 804 IESGSDVNYVDIDGRTALQSAVLCLGSEVIDVLVEAAGASLEQRNVMGCAPLHIAVRKEGRLEAAL--ALLRNGADVNVARTGFKEGEMPLHTAARRGYLVPQGRGRAGGTWHHRGXXXXXXXXXXXXXXXXRRGHRAAVDISDADFNGPRDLQEVERARKFLVNASADRAWRRRGHLVLCRAHPERAQL 1367
IE G+DV+ + G AL A E +DVL+ A GA+ + G LH+A R EAA LL++GADVN G + T A + +V G RAA I R +E E RK L NA ADRAWRRR LVLCRA P++ QL
Sbjct: 180 IEHGADVDATNYGGVAALHHATANNKVEAMDVLLRA-GANARSMSESGHTVLHMAAITRTRTEAATLAVLLKHGADVNAQTVGGTSVLEYVATRAGKQGIVE--------------VVDLLLRWGADETHVAGNGMRAADAIGMKVPEEDRIPEEFEGVRKLLANAPADRAWRRRCSLVLCRARPDKMQL 354
BLAST of mRNA_S-firma_F_contig1019.296.1 vs. uniprot
Match: D7G1U1_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U1_ECTSI) HSP 1 Score: 57.8 bits (138), Expect = 4.410e-5 Identity = 31/53 (58.49%), Postives = 35/53 (66.04%), Query Frame = 3
Query: 1251 DLQEVERARKFLVNASADRAWRRRGHLVLCRAHPERAQLRLESGQSDAGMATG 1409
D ++ ERAR L A ADRAWRRRG LVLCRAHP+R QL G AG+ G
Sbjct: 326 DPEDDERARSLLARAPADRAWRRRGLLVLCRAHPDRLQL----GGDLAGLVAG 374 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1019.296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1019.296.1 >prot_S-firma_F_contig1019.296.1 ID=prot_S-firma_F_contig1019.296.1|Name=mRNA_S-firma_F_contig1019.296.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=299bp MPRDQPHSMLVPRGGKPELPTAARGARVNAADKEGGTPLCRAAKHGRLAVback to top mRNA from alignment at S-firma_F_contig1019:16466..19605- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig1019.296.1 ID=mRNA_S-firma_F_contig1019.296.1|Name=mRNA_S-firma_F_contig1019.296.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3140bp|location=Sequence derived from alignment at S-firma_F_contig1019:16466..19605- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig1019:16466..19605- >mRNA_S-firma_F_contig1019.296.1 ID=mRNA_S-firma_F_contig1019.296.1|Name=mRNA_S-firma_F_contig1019.296.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1794bp|location=Sequence derived from alignment at S-firma_F_contig1019:16466..19605- (Sphaerotrichia firma ET2_F female)back to top |