mRNA_S-firma_F_contig1019.294.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1019.294.1
Unique NamemRNA_S-firma_F_contig1019.294.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1019.294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1019contigS-firma_F_contig1019:8691..9159 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size469
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1019.294.1prot_S-firma_F_contig1019.294.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1019 8824..9129 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815546.6401932-UTR-S-firma_F_contig1019:8690..88231622815546.6401932-UTR-S-firma_F_contig1019:8690..8823Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1019 8691..8823 +
1696949406.5300303-UTR-S-firma_F_contig1019:8690..88231696949406.5300303-UTR-S-firma_F_contig1019:8690..8823Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1019 8691..8823 +
1622815546.6653295-UTR-S-firma_F_contig1019:9129..91591622815546.6653295-UTR-S-firma_F_contig1019:9129..9159Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1019 9130..9159 +
1696949406.578668-UTR-S-firma_F_contig1019:9129..91591696949406.578668-UTR-S-firma_F_contig1019:9129..9159Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1019 9130..9159 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815546.6523676-CDS-S-firma_F_contig1019:8823..91291622815546.6523676-CDS-S-firma_F_contig1019:8823..9129Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1019 8824..9129 +
1696949406.5493438-CDS-S-firma_F_contig1019:8823..91291696949406.5493438-CDS-S-firma_F_contig1019:8823..9129Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1019 8824..9129 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1019.294.1

>prot_S-firma_F_contig1019.294.1 ID=prot_S-firma_F_contig1019.294.1|Name=mRNA_S-firma_F_contig1019.294.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=102bp
MPRFPHLFVATFRPLDLMRSDDNTPFCQILTFWECFLANNSRPRSKGPAY
LVPCHAWLTKCSATFRGECLPSLHHACCCAGKADVVAAQCACSAGPASCT
C*
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mRNA from alignment at S-firma_F_contig1019:8691..9159+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1019.294.1 ID=mRNA_S-firma_F_contig1019.294.1|Name=mRNA_S-firma_F_contig1019.294.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=469bp|location=Sequence derived from alignment at S-firma_F_contig1019:8691..9159+ (Sphaerotrichia firma ET2_F female)
GTGGGGCCGATGGAGGAGCTGAGGTACTTACACCGCCGAATAGTCGTGGG
GAGCAGTAGCATTGATGGTTACTGAGTGTTCTACAGGCTAAATTTTGGTG
GTTCATGTGGTGTGGGTGCTGACTCAAGAGAGCATGCCGCGCTTTCCCCA
CCTCTTTGTGGCAACCTTTCGTCCTCTTGACCTGATGCGTAGCGACGATA
ACACGCCCTTCTGTCAGATCTTGACCTTCTGGGAATGTTTTTTGGCCAAC
AACTCACGTCCCCGCTCAAAAGGGCCGGCCTATCTTGTTCCGTGTCACGC
CTGGCTGACCAAATGCAGTGCTACCTTTCGGGGCGAATGCCTGCCAAGCC
TCCATCACGCATGTTGCTGTGCGGGCAAAGCGGACGTCGTTGCGGCGCAA
TGCGCTTGTTCGGCGGGCCCCGCATCTTGTACGTGCTAATTCCCGTGCAC
TTTTTTGGTTTCGTGTCGG
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Coding sequence (CDS) from alignment at S-firma_F_contig1019:8691..9159+

>mRNA_S-firma_F_contig1019.294.1 ID=mRNA_S-firma_F_contig1019.294.1|Name=mRNA_S-firma_F_contig1019.294.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=612bp|location=Sequence derived from alignment at S-firma_F_contig1019:8691..9159+ (Sphaerotrichia firma ET2_F female)
ATGCCGCGCTTTCCCCACCTCTTTGTGGCAACCTTTCGTCCTCTTGACCT
GATGCGTAGCGACGATAACACGCCCTTCTGTCAGATCTTGACCTTCTGGG
AATGTTTTTTGGCCAACAACTCACGTCCCCGCTCAAAAGGGCCGGCCTAT
CTTGTTCCGTGTCACGCCTGGCTGACCAAATGCAGTGCTACCTTTCGGGG
CGAATGCCTGCCAAGCCTCCATCACGCATGTTGCTGTGCGGGCAAAGCGG
ACGTCGTTGCGGCGCAATGCGCTTGTTCGGCGGGCCCCGCATCTTGTACG
TGCTAAATGCCGCGCTTTCCCCACCTCTTTGTGGCAACCTTTCGTCCTCT
TGACCTGATGCGTAGCGACGATAACACGCCCTTCTGTCAGATCTTGACCT
TCTGGGAATGTTTTTTGGCCAACAACTCACGTCCCCGCTCAAAAGGGCCG
GCCTATCTTGTTCCGTGTCACGCCTGGCTGACCAAATGCAGTGCTACCTT
TCGGGGCGAATGCCTGCCAAGCCTCCATCACGCATGTTGCTGTGCGGGCA
AAGCGGACGTCGTTGCGGCGCAATGCGCTTGTTCGGCGGGCCCCGCATCT
TGTACGTGCTAA
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