mRNA_S-firma_F_contig10186.289.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10186.289.1
Unique NamemRNA_S-firma_F_contig10186.289.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10186.289.1 vs. uniprot
Match: D7FL28_ECTSI (Midasin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL28_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 1.110e-44
Identity = 99/176 (56.25%), Postives = 110/176 (62.50%), Query Frame = 1
Query:   55 EIISLRRQVDRAASLAETVRRQTIAVPDEPRKAGDGNGEAVSGGXXXAGKKTPASCFCWSDGVLVEDLERGD*VVLDGANLCSASVLDRLNPLLEPGGVLPLTECGTSSDNXXXXXXXXXXXXXXXDPDAPAEAPESAAPSKAASSHRVVRPHPNFRLFLAADPSCGEVSRAMRNR 582
            E  SL R V+RA +LA TVR+Q  A                   XX   K + ASCFCWSDGVLV+ LERGD VVLDGANLCS+SVLDRLNPLLEPGGVLPLTECGTSS N                        +  A   +++SHR +RPHPNFRLFL ADPSCGEVSRAMRNR
Sbjct: 1767 ETNSLERWVERAVALATTVRQQ--AATXXXXXXXXXXXXXXXXXXXRGRKSSSASCFCWSDGVLVQALERGDWVVLDGANLCSSSVLDRLNPLLEPGGVLPLTECGTSSGNG-----------------------QEGANGASSTSHRTIRPHPNFRLFLTADPSCGEVSRAMRNR 1917          
BLAST of mRNA_S-firma_F_contig10186.289.1 vs. uniprot
Match: A0A6H5JCJ9_9PHAE (Midasin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCJ9_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 1.790e-43
Identity = 95/176 (53.98%), Postives = 110/176 (62.50%), Query Frame = 1
Query:   55 EIISLRRQVDRAASLAETVRRQTIAVPDEPRKAGDGNGEAVSGGXXXAGKKTPASCFCWSDGVLVEDLERGD*VVLDGANLCSASVLDRLNPLLEPGGVLPLTECGTSSDNXXXXXXXXXXXXXXXDPDAPAEAPESAAPSKAASSHRVVRPHPNFRLFLAADPSCGEVSRAMRNR 582
            E++SL R+V+RAA+LA  ++     V D    A   +    SG      + + ASCFCWSDGVLV+ LERGD +VLDGANLCSASVLDRLNPLLEPGGVLPLTECGTSS                            A+P+     HR +RPH NFRLFL ADPSCGEVSRAMRNR
Sbjct:  592 EVLSLNRRVERAAALATNLQH---TVTDAALLANAESSVGGSGDGAPGRRSSRASCFCWSDGVLVQALERGDWIVLDGANLCSASVLDRLNPLLEPGGVLPLTECGTSS---------------------------GASPT----GHRTIRPHSNFRLFLTADPSCGEVSRAMRNR 733          
BLAST of mRNA_S-firma_F_contig10186.289.1 vs. uniprot
Match: A0A7S1ZU90_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZU90_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.510e-23
Identity = 62/127 (48.82%), Postives = 74/127 (58.27%), Query Frame = 1
Query:  202 KKTPASCFCWSDGVLVEDLERGD*VVLDGANLCSASVLDRLNPLLEPGGVLPLTECGTSSDNXXXXXXXXXXXXXXXDPDAPAEAPESAAPSKAASSHRVVRPHPNFRLFLAADPSCGEVSRAMRNR 582
            K T  S F W DG+LV+ +ERGD + L+ AN CSASVLDRLNP++E GG L L EC  SSD+                     + P  A        HRVV  HPNFRLFL+ +P+ GEVSRAMRNR
Sbjct:  477 KATGGSHFRWVDGILVKAMERGDWLHLENANFCSASVLDRLNPIMEQGGELILAECSVSSDDQ--------------------KHPHQA--------HRVVTRHPNFRLFLSMNPTSGEVSRAMRNR 575          
BLAST of mRNA_S-firma_F_contig10186.289.1 vs. uniprot
Match: E1Z330_CHLVA (LysM domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z330_CHLVA)

HSP 1 Score: 103 bits (258), Expect = 2.730e-22
Identity = 61/129 (47.29%), Postives = 68/129 (52.71%), Query Frame = 1
Query:  196 AGKKTPASCFCWSDGVLVEDLERGD*VVLDGANLCSASVLDRLNPLLEPGGVLPLTECGTSSDNXXXXXXXXXXXXXXXDPDAPAEAPESAAPSKAASSHRVVRPHPNFRLFLAADPSCGEVSRAMRNR 582
            AG ++ A  F W DG L   +ERG  V+LD ANLC+ +VLDRLNPLLEP GVL L ECG                                         R+VRPHPNFRLFLA DP  GEVSRAMRNR
Sbjct: 2532 AGAESAAGKFEWVDGALTRAVERGGWVLLDSANLCNPTVLDRLNPLLEPQGVLLLNECGGGG------------------------------------GARIVRPHPNFRLFLALDPRHGEVSRAMRNR 2624          
BLAST of mRNA_S-firma_F_contig10186.289.1 vs. uniprot
Match: A0A2P6V0F8_9CHLO (Type A von Willebrand factor domain-containing isoform A n=2 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V0F8_9CHLO)

HSP 1 Score: 103 bits (258), Expect = 2.800e-22
Identity = 66/146 (45.21%), Postives = 74/146 (50.68%), Query Frame = 1
Query:  148 KAGDGNGEAVSGGXXXAGK-KTPASCFCWSDGVLVEDLERGD*VVLDGANLCSASVLDRLNPLLEPGGVLPLTECGTSSDNXXXXXXXXXXXXXXXDPDAPAEAPESAAPSKAASSHRVVRPHPNFRLFLAADPSCGEVSRAMRNR 582
            +AGD  G         AG  ++ A  F W DG L   +E G  V+LD ANLC+ +VLDRLNPLLEP GVL L ECG S+                                      RVVRPHPNFRLFLA DP  GEVSRAMRNR
Sbjct: 2501 QAGDAGGATAELAASLAGGGESAAGKFEWVDGALTRAIEGGQWVLLDSANLCNPTVLDRLNPLLEPHGVLLLNECGGSNGGA-----------------------------------RVVRPHPNFRLFLALDPRHGEVSRAMRNR 2611          
BLAST of mRNA_S-firma_F_contig10186.289.1 vs. uniprot
Match: A0A4D9D334_9STRA (VWFA domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D334_9STRA)

HSP 1 Score: 103 bits (257), Expect = 3.810e-22
Identity = 61/120 (50.83%), Postives = 69/120 (57.50%), Query Frame = 1
Query:  223 FCWSDGVLVEDLERGD*VVLDGANLCSASVLDRLNPLLEPGGVLPLTECGTSSDNXXXXXXXXXXXXXXXDPDAPAEAPESAAPSKAASSHRVVRPHPNFRLFLAADPSCGEVSRAMRNR 582
            F W DG LVE LERG  ++L   NLC ASVLDRLN LLEP G L LTE GTS  +                         +AAP+      R++RPHP+FRLFL  DPS GEVSRAMRNR
Sbjct: 2621 FAWVDGPLVEALERGHWLLLTNVNLCPASVLDRLNALLEPNGSLLLTEAGTSPSSS-----------------------RNAAPAP-----RILRPHPSFRLFLTMDPSVGEVSRAMRNR 2712          
BLAST of mRNA_S-firma_F_contig10186.289.1 vs. uniprot
Match: A0A2P6TJ35_CHLSO (Type A von Willebrand factor domain-containing n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TJ35_CHLSO)

HSP 1 Score: 103 bits (256), Expect = 5.180e-22
Identity = 60/128 (46.88%), Postives = 69/128 (53.91%), Query Frame = 1
Query:  199 GKKTPASCFCWSDGVLVEDLERGD*VVLDGANLCSASVLDRLNPLLEPGGVLPLTECGTSSDNXXXXXXXXXXXXXXXDPDAPAEAPESAAPSKAASSHRVVRPHPNFRLFLAADPSCGEVSRAMRNR 582
            G ++ A  F W DG L   +ERG  V+LD ANLC+ +VLDRLNPLLEP GVL L ECG                                      ++ RVVRPHPNFRL+LA DP  GEVSRAMRNR
Sbjct: 2494 GAESVAGKFEWVDGALTRAIERGQWVLLDSANLCNPTVLDRLNPLLEPQGVLLLNECGGGGG----------------------------------ATARVVRPHPNFRLYLALDPRHGEVSRAMRNR 2587          
BLAST of mRNA_S-firma_F_contig10186.289.1 vs. uniprot
Match: A0A6G1L7T7_9PEZI (Midasin n=1 Tax=Teratosphaeria nubilosa TaxID=161662 RepID=A0A6G1L7T7_9PEZI)

HSP 1 Score: 101 bits (251), Expect = 2.400e-21
Identity = 57/122 (46.72%), Postives = 68/122 (55.74%), Query Frame = 1
Query:  217 SCFCWSDGVLVEDLERGD*VVLDGANLCSASVLDRLNPLLEPGGVLPLTECGTSSDNXXXXXXXXXXXXXXXDPDAPAEAPESAAPSKAASSHRVVRPHPNFRLFLAADPSCGEVSRAMRNR 582
            +CF W+DGVLV  L++G  V+LD ANLCSASVLDRLN LLEP G L + E                                    +KA  S ++VRPHPNFR+FL  DP  GE+SRAMRNR
Sbjct: 2163 ACFSWTDGVLVNALQQGKWVILDNANLCSASVLDRLNGLLEPNGSLVINEH-----------------------------------TKADGSPQIVRPHPNFRIFLTVDPRYGELSRAMRNR 2249          
BLAST of mRNA_S-firma_F_contig10186.289.1 vs. uniprot
Match: A0A7S4K6U7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K6U7_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 2.030e-20
Identity = 58/129 (44.96%), Postives = 69/129 (53.49%), Query Frame = 1
Query:  196 AGKKTPASCFCWSDGVLVEDLERGD*VVLDGANLCSASVLDRLNPLLEPGGVLPLTECGTSSDNXXXXXXXXXXXXXXXDPDAPAEAPESAAPSKAASSHRVVRPHPNFRLFLAADPSCGEVSRAMRNR 582
            AG K     F W DG+LV  L+ G  + L+  N C +SVLDRLNPL+E GG L LTECG   +                  DA  +      P       RVVR HP+FR+FL+ DPS GEVSRAMRNR
Sbjct:  220 AGGKKKGGLFRWVDGILVRALQNGHWLHLENVNFCPSSVLDRLNPLMESGGELVLTECGVGGN------------------DADDDDGNGGGP-------RVVRAHPDFRIFLSMDPSFGEVSRAMRNR 323          
BLAST of mRNA_S-firma_F_contig10186.289.1 vs. uniprot
Match: C4Y9D9_CLAL4 (Uncharacterized protein n=1 Tax=Clavispora lusitaniae (strain ATCC 42720) TaxID=306902 RepID=C4Y9D9_CLAL4)

HSP 1 Score: 97.8 bits (242), Expect = 3.800e-20
Identity = 58/127 (45.67%), Postives = 69/127 (54.33%), Query Frame = 1
Query:  202 KKTPASCFCWSDGVLVEDLERGD*VVLDGANLCSASVLDRLNPLLEPGGVLPLTECGTSSDNXXXXXXXXXXXXXXXDPDAPAEAPESAAPSKAASSHRVVRPHPNFRLFLAADPSCGEVSRAMRNR 582
            K+T    F W DG+LV+ + RGD +VLD ANLC+ASVLDRLN LLE  G L + EC                            AP+         S RV++PHPNFRLFL  DP  GE+SRAMRNR
Sbjct: 2212 KETATVKFKWFDGLLVQSVMRGDWLVLDNANLCNASVLDRLNSLLETNGSLIINECS---------------------------APDG--------SPRVLKPHPNFRLFLTVDPKYGELSRAMRNR 2303          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10186.289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL28_ECTSI1.110e-4456.25Midasin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JCJ9_9PHAE1.790e-4353.98Midasin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
A0A7S1ZU90_9STRA1.510e-2348.82Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
E1Z330_CHLVA2.730e-2247.29LysM domain-containing protein n=1 Tax=Chlorella v... [more]
A0A2P6V0F8_9CHLO2.800e-2245.21Type A von Willebrand factor domain-containing iso... [more]
A0A4D9D334_9STRA3.810e-2250.83VWFA domain-containing protein n=1 Tax=Nannochloro... [more]
A0A2P6TJ35_CHLSO5.180e-2246.88Type A von Willebrand factor domain-containing n=1... [more]
A0A6G1L7T7_9PEZI2.400e-2146.72Midasin n=1 Tax=Teratosphaeria nubilosa TaxID=1616... [more]
A0A7S4K6U7_9STRA2.030e-2044.96Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
C4Y9D9_CLAL43.800e-2045.67Uncharacterized protein n=1 Tax=Clavispora lusitan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10186contigS-firma_F_contig10186:3638..4692 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size585
Cds size447
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10186.289.1prot_S-firma_F_contig10186.289.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10186 3774..4692 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815546.1765373-UTR-S-firma_F_contig10186:3637..37731622815546.1765373-UTR-S-firma_F_contig10186:3637..3773Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10186 3638..3773 +
1696949406.2315133-UTR-S-firma_F_contig10186:3637..37731696949406.2315133-UTR-S-firma_F_contig10186:3637..3773Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10186 3638..3773 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815546.1886601-CDS-S-firma_F_contig10186:3773..39451622815546.1886601-CDS-S-firma_F_contig10186:3773..3945Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10186 3774..3945 +
1696949406.2412777-CDS-S-firma_F_contig10186:3773..39451696949406.2412777-CDS-S-firma_F_contig10186:3773..3945Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10186 3774..3945 +
1622815546.2019348-CDS-S-firma_F_contig10186:4417..46921622815546.2019348-CDS-S-firma_F_contig10186:4417..4692Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10186 4418..4692 +
1696949406.2512696-CDS-S-firma_F_contig10186:4417..46921696949406.2512696-CDS-S-firma_F_contig10186:4417..4692Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10186 4418..4692 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10186.289.1

>prot_S-firma_F_contig10186.289.1 ID=prot_S-firma_F_contig10186.289.1|Name=mRNA_S-firma_F_contig10186.289.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=149bp
MSHGRRATAMVRPSAAAAVEPGKKRLRRVSAGATGCWWRIWRGATEWCWT
GLTCALPVCSIDSTLCSSLEECSPSPSAALPPTTMTIPPPPPRTAAAAAI
QTPQPKPRRAQHRPRRPRATASCDRTRTSASSSRRTRPAERSPAPCATA
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mRNA from alignment at S-firma_F_contig10186:3638..4692+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10186.289.1 ID=mRNA_S-firma_F_contig10186.289.1|Name=mRNA_S-firma_F_contig10186.289.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1055bp|location=Sequence derived from alignment at S-firma_F_contig10186:3638..4692+ (Sphaerotrichia firma ET2_F female)
AAGTCCGTGTCCGGGACGCTATCAGCTGCAGCAGCAGCATCGACGACAGC ACCCGAAATTATTTCTCTGAGACGTCAAGTGGATCGAGCGGCAAGCCTGG CTGAGACGGTTCGCCGGCAGACTATCGCTGTCCCCGATGAGCCACGGAAG GCGGGCGACGGCAATGGTGAGGCCGTCAGCGGCGGCGGCGGTGGAGCCGG GAAAAAAACGCCTGCGTCGTGTTTCTGCTGGAGCGACGGGGTGCTGGTGG AGGATCTGGAGAGGGGCGACTGAGTGGTGTTGGACGGGGCTAACCTGTGC TCTGCCAGGTGAACGCACCACGCGTTGTTGTCTTTGCCTTCGGTTTGCGC TTGTGTTCGGTGGTGACCAAGCCGCTTGGCCTTTTTTTTCGGAAGTTTTT TTTTTTCATACGTCAGCCGTCTGCCTTAACCTGTGCACGATAAACTGTTC CAAACCGCCCGACAGTTTTTGTACGTTCAGGGTAACGCCGATTTTGGTGT TGCCAATTAGCGGGCGTGTACGGCCTGTTGTTGCGGTCGATGTTGGTTTG CCTGTGTTTCTTCTGAAGAACGAACGTATCGGCGGGGCGTAATCGTGATC GTCCGTGATAACACGGTGCGCAGTCGTTCTCCTCCTTCACAAATAACGAC CCCACTTCCCTCCATATAAAGGCCGCTGTTGCCTTTGCTCCTCTCCCCAG GAGTTCTTCGCCTGTGCTGACGCCGCACGTTTTTGTTTTTGTTCTCTTCC CTCGCCTGTCCTGTTTTCCCGATGTCCAAGTGTGCTCGATCGACTCAACC CTCTGCTCGAGCCTGGAGGAGTGCTCCCCCTCACCGAGTGCGGCACTTCC TCCGACAACGATGACGATACCACCACCACCTCCGAGAACGGCGGCGGCGG CGGCGATCCAGACGCCCCAGCCGAAGCCCCGGAGAGCGCAGCACCGTCCA AGGCGGCCTCGAGCCACCGCGTCGTGCGACCGCACCCGAACTTCCGCCTC TTCCTCGCGGCGGACCCGTCCTGCGGAGAGGTCTCCCGCGCCATGCGCAA CCGCT
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Coding sequence (CDS) from alignment at S-firma_F_contig10186:3638..4692+

>mRNA_S-firma_F_contig10186.289.1 ID=mRNA_S-firma_F_contig10186.289.1|Name=mRNA_S-firma_F_contig10186.289.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=894bp|location=Sequence derived from alignment at S-firma_F_contig10186:3638..4692+ (Sphaerotrichia firma ET2_F female)
ATGAGCCACGGAAGGCGGGCGACGGCAATGGTGAGGCCGTCAGCGGCGGC
GGCGGTGGAGCCGGGAAAAAAACGCCTGCGTCGTGTTTCTGCTGGAGCGA
CGGGGTGCTGGTGGAGGATCTGGAGAGGGGCGACTGAGTGGTGTTGGACG
GGGCTAACCTGTGCTCTGCCAGATGAGCCACGGAAGGCGGGCGACGGCAA
TGGTGAGGCCGTCAGCGGCGGCGGCGGTGGAGCCGGGAAAAAAACGCCTG
CGTCGTGTTTCTGCTGGAGCGACGGGGTGCTGGTGGAGGATCTGGAGAGG
GGCGACTGAGTGGTGTTGGACGGGGCTAACCTGTGCTCTGCCAGTGTGCT
CGATCGACTCAACCCTCTGCTCGAGCCTGGAGGAGTGCTCCCCCTCACCG
AGTGCGGCACTTCCTCCGACAACGATGACGATACCACCACCACCTCCGAG
AACGGCGGCGGCGGCGGCGATCCAGACGCCCCAGCCGAAGCCCCGGAGAG
CGCAGCACCGTCCAAGGCGGCCTCGAGCCACCGCGTCGTGCGACCGCACC
CGAACTTCCGCCTCTTCCTCGCGGCGGACCCGTCCTGCGGAGAGGTCTCC
CGCGCCATGCGCAACCGCTTGTGCTCGATCGACTCAACCCTCTGCTCGAG
CCTGGAGGAGTGCTCCCCCTCACCGAGTGCGGCACTTCCTCCGACAACGA
TGACGATACCACCACCACCTCCGAGAACGGCGGCGGCGGCGGCGATCCAG
ACGCCCCAGCCGAAGCCCCGGAGAGCGCAGCACCGTCCAAGGCGGCCTCG
AGCCACCGCGTCGTGCGACCGCACCCGAACTTCCGCCTCTTCCTCGCGGC
GGACCCGTCCTGCGGAGAGGTCTCCCGCGCCATGCGCAACCGCT
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