mRNA_S-firma_F_contig10168.278.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10168.278.1
Unique NamemRNA_S-firma_F_contig10168.278.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10168.278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10168contigS-firma_F_contig10168:19..1201 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog3847.GLYMA03G06804.1
PFAMsLRRNT_2,LRR_1,LRR_6,LRR_8
Max annot lvl35493|Streptophyta
GOsGO:0008150,GO:0009888,GO:0010073,GO:0032501,GO:0032502,GO:0048507,GO:0048856
Evalue0.000547
EggNOG OGsCOG4886@1|root,KOG0619@2759|Eukaryota,37J1Y@33090|Viridiplantae,3GFFF@35493|Streptophyta,4JKNE@91835|fabids
DescriptionReceptor-like protein 12
COG categoryS
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size163
Cds size159
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10168.278.1prot_S-firma_F_contig10168.278.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10168 21..1201 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815545.1533988-CDS-S-firma_F_contig10168:20..761622815545.1533988-CDS-S-firma_F_contig10168:20..76Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10168 21..76 -
1696949405.3842366-CDS-S-firma_F_contig10168:20..761696949405.3842366-CDS-S-firma_F_contig10168:20..76Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10168 21..76 -
1622815545.167202-CDS-S-firma_F_contig10168:502..5831622815545.167202-CDS-S-firma_F_contig10168:502..583Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10168 503..583 -
1696949405.3957675-CDS-S-firma_F_contig10168:502..5831696949405.3957675-CDS-S-firma_F_contig10168:502..583Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10168 503..583 -
1622815545.188725-CDS-S-firma_F_contig10168:1179..12011622815545.188725-CDS-S-firma_F_contig10168:1179..1201Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10168 1180..1201 -
1696949405.4155138-CDS-S-firma_F_contig10168:1179..12011696949405.4155138-CDS-S-firma_F_contig10168:1179..1201Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10168 1180..1201 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10168.278.1

>prot_S-firma_F_contig10168.278.1 ID=prot_S-firma_F_contig10168.278.1|Name=mRNA_S-firma_F_contig10168.278.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=53bp
LILNQLTGTVPLGIWKLPCTEGVDLSRNLLTHLTDPEDKTASTRVVLECM
ERL
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mRNA from alignment at S-firma_F_contig10168:19..1201-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10168.278.1 ID=mRNA_S-firma_F_contig10168.278.1|Name=mRNA_S-firma_F_contig10168.278.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1183bp|location=Sequence derived from alignment at S-firma_F_contig10168:19..1201- (Sphaerotrichia firma ET2_F female)
CTTATCTTGAATCAGCTTACAGGTGAGCCTGCAATTTGTGTGTTTATTCG
CCTGCTCGTCTCACCTTTTTCGACGTCTGGAACATGTCAAGGGGCCCCTT
GACCACTAGTCGTCTAGAACCCAGCGGATGCACTCCCTGCAGGAAGGGCA
GACCAGAGTTGTTGGATGTGTATGCCTCGTTCATATGCTTGTTGTCGCTT
CAGCGCAAGTGCCGTTTGTGTGAGTGAGACACAACTTCTAGAAGCCCGAG
TGGAAATCCGCCCTGAAAGCAATCCGGAGCCAACAAGAGGACGTGGGGTT
TCGGCGCATCTCGTGATATACTCATCCCATCGTCTGTGGCGTGCTAGAAT
GAATGCGCAACAGGATATCTACCCCGCATCGTGTTCAAAGAAATATTACT
TGCCGACGGCTGCGAAAGCCATCGAGCTCCCCCAATGCTGTATTTGCTCG
GCGATGGTTGGAAGAAAGTGTCAGAAACGTATGTATGGTGTGGGGACTAT
CCCAGCCCCATGAATTCCGCCGATAGTCGACAGACGCGTGGTGTATGGGA
GTCGAACGTAAACCGCCTACATGTTACGTCTTTCTTGACCCCCCGCCGTT
TCCTTCTCCCTGCCCCAGGTACCGTGCCGCTGGGCATATGGAAACTACCC
TGTACAGAGGGTGTAGACCTTTCTAGAAACCTGCTGACTCATTTAACTGG
TGAGAATATAAAAATCATTTTGGCGGCGCGATGGCCACGGATCTGTCAGT
GGAGATGGTAGACGGTGGAGTTGGTGTGAGCAGAAACGAGGGCACCGTAG
GAGATGTTTGATGACCGGCAGGGCGGAAGCCCCAAAAGAGGAACGACTAG
CGGTAGTAGCAAAATTTGGCATGAAAGGTTCGCCGAAACAAATTCTTCGT
TGATACCACTCCGCGAAACGGAATCTGAACCTTGGTGGCGAGTGTTTGGA
AGTGCTGATTTTCAACAACGGTTGGTTTGCGAGTTCTTCTTCCCCTCCAC
CGAGTCTTGTTGGGCGGCAGTGTCTCCTCGATGCTTTCGCGGTGGGGGAC
ACAGACCTTTTTTTTCTCGCACCAACTCCAAAACAATACGACGCCGCCCC
CCCCCTGCCGCTCCCTGTGTGGCAGATCCCGAAGACAAGACCGCATCGAC
GCGTGTGGTGCTTGAGTGCATGGAACGGCTGGA
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Coding sequence (CDS) from alignment at S-firma_F_contig10168:19..1201-

>mRNA_S-firma_F_contig10168.278.1 ID=mRNA_S-firma_F_contig10168.278.1|Name=mRNA_S-firma_F_contig10168.278.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=318bp|location=Sequence derived from alignment at S-firma_F_contig10168:19..1201- (Sphaerotrichia firma ET2_F female)
CTTATCTTGAATCAGCTTACAGCTTATCTTGAATCAGCTTACAGGTACCG
TGCCGCTGGGCATATGGAAACTACCCTGTACAGAGGGTGTAGACCTTTCT
AGAAACCTGCTGACTCATTTAACTGGTACCGTGCCGCTGGGCATATGGAA
ACTACCCTGTACAGAGGGTGTAGACCTTTCTAGAAACCTGCTGACTCATT
TAACTGATCCCGAAGACAAGACCGCATCGACGCGTGTGGTGCTTGAGTGC
ATGGAACGGCTGATCCCGAAGACAAGACCGCATCGACGCGTGTGGTGCTT
GAGTGCATGGAACGGCTG
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