mRNA_S-firma_F_contig10167.277.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10167.277.1
Unique NamemRNA_S-firma_F_contig10167.277.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig10167.277.1 vs. uniprot
Match: D7FWJ6_ECTSI (Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B\' beta isoform n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWJ6_ECTSI)

HSP 1 Score: 313 bits (801), Expect = 2.970e-102
Identity = 151/153 (98.69%), Postives = 152/153 (99.35%), Query Frame = 1 
Query:    1 RDKEVKRCTLLELVEYINSAHGQQPDDCDPDKDEPLLEEAWPHLQVVYEFLVRFVVSSEVDAKQAKQYVDQALCLQLVDLFDSEDPRERDYLKTILHRVYGKFMMHRAFIRRAVGNAFLRFVYECPRHNGIGELLEILGSIVNGFATPLKKEH 459
            RDKEVKRCTLLELVEYINS HGQQPDDCDPDKDEPLLEEAWPHLQVVYEFLVRFVVSSEVDAKQAKQYVDQA+CLQLVDLFDSEDPRERDYLKTILHRVYGKFMMHRAFIRRAVGNAFLRFVYECPRHNGIGELLEILGSIVNGFATPLKKEH
Sbjct:  215 RDKEVKRCTLLELVEYINSTHGQQPDDCDPDKDEPLLEEAWPHLQVVYEFLVRFVVSSEVDAKQAKQYVDQAMCLQLVDLFDSEDPRERDYLKTILHRVYGKFMMHRAFIRRAVGNAFLRFVYECPRHNGIGELLEILGSIVNGFATPLKKEH 367
[Close]
BLAST of mRNA_S-firma_F_contig10167.277.1 vs. uniprot
Match: A0A6H5J7C6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7C6_9PHAE)

HSP 1 Score: 266 bits (681), Expect = 2.520e-87
Identity = 129/130 (99.23%), Postives = 130/130 (100.00%), Query Frame = 1 
Query:   70 QPDDCDPDKDEPLLEEAWPHLQVVYEFLVRFVVSSEVDAKQAKQYVDQALCLQLVDLFDSEDPRERDYLKTILHRVYGKFMMHRAFIRRAVGNAFLRFVYECPRHNGIGELLEILGSIVNGFATPLKKEH 459
            QPDDCDPDKDEPLLEEAWPHLQVVYEFLVRFVVSSEVDAKQAKQYVDQA+CLQLVDLFDSEDPRERDYLKTILHRVYGKFMMHRAFIRRAVGNAFLRFVYECPRHNGIGELLEILGSIVNGFATPLKKEH
Sbjct:   19 QPDDCDPDKDEPLLEEAWPHLQVVYEFLVRFVVSSEVDAKQAKQYVDQAMCLQLVDLFDSEDPRERDYLKTILHRVYGKFMMHRAFIRRAVGNAFLRFVYECPRHNGIGELLEILGSIVNGFATPLKKEH 148
[Close]
BLAST of mRNA_S-firma_F_contig10167.277.1 vs. uniprot
Match: A0A7S0GE31_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GE31_9STRA)

HSP 1 Score: 233 bits (593), Expect = 2.300e-73
Identity = 116/178 (65.17%), Postives = 134/178 (75.28%), Query Frame = 1 
Query:    1 RDKEVKRCTLLELVEYINSAHGQQ-------------------------PDDCDPDKDEPLLEEAWPHLQVVYEFLVRFVVSSEVDAKQAKQYVDQALCLQLVDLFDSEDPRERDYLKTILHRVYGKFMMHRAFIRRAVGNAFLRFVYECPRHNGIGELLEILGSIVNGFATPLKKEH 459
            R K++KR TLLELV+Y+N+  GQ+                          DD DP++DEP+LE AWPHLQV YEF +RF+VSSEV+AK AK+YVDQ  CLQLV+LFDSEDPRERDYLKTILHR+YGKFM HR+FIRRA+ N F RFVYE  RHNGIGELLEILGSI+NGFA PLKKEH
Sbjct:   75 RGKDMKRQTLLELVDYVNTPAGQKIFTESVMSDLMKCVEANVCRALPPATDDFDPEEDEPVLEPAWPHLQVAYEFFLRFIVSSEVNAKAAKRYVDQRFCLQLVELFDSEDPRERDYLKTILHRIYGKFMSHRSFIRRAISNVFYRFVYESERHNGIGELLEILGSIINGFAIPLKKEH 252
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BLAST of mRNA_S-firma_F_contig10167.277.1 vs. uniprot
Match: A0A7S1Y370_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y370_9STRA)

HSP 1 Score: 233 bits (593), Expect = 3.240e-73
Identity = 116/178 (65.17%), Postives = 134/178 (75.28%), Query Frame = 1 
Query:    1 RDKEVKRCTLLELVEYINSAHGQQ-------------------------PDDCDPDKDEPLLEEAWPHLQVVYEFLVRFVVSSEVDAKQAKQYVDQALCLQLVDLFDSEDPRERDYLKTILHRVYGKFMMHRAFIRRAVGNAFLRFVYECPRHNGIGELLEILGSIVNGFATPLKKEH 459
            R K++KR TLLELV+Y+N+  GQ+                          DD DP++DEP+LE AWPHLQV YEF +RF+VSSEV+AK AK+YVDQ  CLQLV+LFDSEDPRERDYLKTILHR+YGKFM HR+FIRRA+ N F RFVYE  RHNGIGELLEILGSI+NGFA PLKKEH
Sbjct:   84 RGKDMKRQTLLELVDYVNTPAGQKIFTESVMSDLMACITANVCRALPPATDDFDPEEDEPVLEPAWPHLQVAYEFFLRFIVSSEVNAKAAKKYVDQKFCLQLVELFDSEDPRERDYLKTILHRIYGKFMSHRSFIRRAISNVFYRFVYETERHNGIGELLEILGSIINGFAIPLKKEH 261
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BLAST of mRNA_S-firma_F_contig10167.277.1 vs. uniprot
Match: A0A7S1FZL3_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FZL3_9STRA)

HSP 1 Score: 230 bits (587), Expect = 6.910e-73
Identity = 115/178 (64.61%), Postives = 133/178 (74.72%), Query Frame = 1 
Query:    1 RDKEVKRCTLLELVEYINSAHGQQ-------------------------PDDCDPDKDEPLLEEAWPHLQVVYEFLVRFVVSSEVDAKQAKQYVDQALCLQLVDLFDSEDPRERDYLKTILHRVYGKFMMHRAFIRRAVGNAFLRFVYECPRHNGIGELLEILGSIVNGFATPLKKEH 459
            R K++KR TLLELV+Y+N+  GQ+                          DD DP++DEP+LE AWPHLQV YEF +RF+VSSEV+AK AK+YVDQ  CL LVDLFDSEDPRERDYLKTILHR+YGKFM HR+FIR+A+ N F RFVYE  RHNGIGELLEILGSI+NGFA PLKKEH
Sbjct:  137 RGKDLKRQTLLELVDYVNTPAGQKIFTESVMQDLMACINANVVRALPPATDDFDPEEDEPVLEPAWPHLQVAYEFFLRFIVSSEVNAKVAKRYVDQRFCLALVDLFDSEDPRERDYLKTILHRIYGKFMSHRSFIRKAISNVFYRFVYETERHNGIGELLEILGSIINGFAIPLKKEH 314
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BLAST of mRNA_S-firma_F_contig10167.277.1 vs. uniprot
Match: A0A7S2V448_9STRA (Serine/threonine protein phosphatase 2A regulatory subunit n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V448_9STRA)

HSP 1 Score: 233 bits (595), Expect = 1.510e-72
Identity = 117/178 (65.73%), Postives = 134/178 (75.28%), Query Frame = 1 
Query:    1 RDKEVKRCTLLELVEYINSAHGQ-------------------------QPDDCDPDKDEPLLEEAWPHLQVVYEFLVRFVVSSEVDAKQAKQYVDQALCLQLVDLFDSEDPRERDYLKTILHRVYGKFMMHRAFIRRAVGNAFLRFVYECPRHNGIGELLEILGSIVNGFATPLKKEH 459
            R KE+KR TLLELV+Y+N+  GQ                         Q DD DP++DEP+LE AWPHLQVVYEF +RF+VSSEV+AK AK+YVDQ  CL LV+LFDSEDPRERDYLKTILHR+YGKFM HR+FIRR++ N F RFVYE  RHNGIGELLEILGSI+NGFA PLKKEH
Sbjct:   84 RGKELKRQTLLELVDYVNTPAGQKIFTEALMPDIMACVVANICRALPPQTDDYDPEEDEPVLEPAWPHLQVVYEFFLRFIVSSEVNAKVAKKYVDQRFCLNLVELFDSEDPRERDYLKTILHRIYGKFMSHRSFIRRSISNVFYRFVYETERHNGIGELLEILGSIINGFAIPLKKEH 261
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BLAST of mRNA_S-firma_F_contig10167.277.1 vs. uniprot
Match: A0A7R9WZM9_9STRA (Serine/threonine protein phosphatase 2A regulatory subunit n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WZM9_9STRA)

HSP 1 Score: 231 bits (588), Expect = 4.690e-72
Identity = 115/178 (64.61%), Postives = 135/178 (75.84%), Query Frame = 1 
Query:    1 RDKEVKRCTLLELVEYINSAHGQQ-------------------------PDDCDPDKDEPLLEEAWPHLQVVYEFLVRFVVSSEVDAKQAKQYVDQALCLQLVDLFDSEDPRERDYLKTILHRVYGKFMMHRAFIRRAVGNAFLRFVYECPRHNGIGELLEILGSIVNGFATPLKKEH 459
            R K++KR TLLELV+Y+N+  GQ+                          DD DP++DEP+LE +WPHLQV YEF +RFVVS+EV+AK AK+YVDQ  CLQLV+LFDSEDPRERDYLKTILHR+YGKFM HR+FIRRA+ NAF RFVYE  RHNGIGELLEILGSI+NGFA PLK+EH
Sbjct:   28 RGKDMKRQTLLELVDYVNTPAGQKIFTESVMGDLMPMVSANVCRALPPATDDFDPEEDEPVLEPSWPHLQVAYEFFLRFVVSAEVNAKVAKKYVDQKFCLQLVELFDSEDPRERDYLKTILHRIYGKFMSHRSFIRRAISNAFYRFVYETERHNGIGELLEILGSIINGFAIPLKREH 205
[Close]
BLAST of mRNA_S-firma_F_contig10167.277.1 vs. uniprot
Match: A0A6S9GHG6_HETAK (Serine/threonine protein phosphatase 2A regulatory subunit n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GHG6_HETAK)

HSP 1 Score: 231 bits (589), Expect = 5.500e-72
Identity = 116/178 (65.17%), Postives = 132/178 (74.16%), Query Frame = 1 
Query:    1 RDKEVKRCTLLELVEYINSAHGQ-------------------------QPDDCDPDKDEPLLEEAWPHLQVVYEFLVRFVVSSEVDAKQAKQYVDQALCLQLVDLFDSEDPRERDYLKTILHRVYGKFMMHRAFIRRAVGNAFLRFVYECPRHNGIGELLEILGSIVNGFATPLKKEH 459
            R KE+KR TLLELV+Y+N+  GQ                         Q DD DP++DEP+LE AWPHLQVVYEF +RF+VSSEV+AK AK+Y DQ  CL LV+LFDSEDPRERDYLKTILHR+YGKFM HR+FIRR + N F RFVYE  RHNGIGELLEILGSI+NGFA PLKKEH
Sbjct:   43 RGKELKRQTLLELVDYVNTPAGQKIFTEALMPDVMACVSANVVRALPPQTDDYDPEEDEPVLEPAWPHLQVVYEFFLRFIVSSEVNAKVAKKYTDQKFCLALVELFDSEDPRERDYLKTILHRIYGKFMSHRSFIRRTISNVFYRFVYETERHNGIGELLEILGSIINGFAIPLKKEH 220
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BLAST of mRNA_S-firma_F_contig10167.277.1 vs. uniprot
Match: A0A7S2PFY6_9STRA (Serine/threonine protein phosphatase 2A regulatory subunit n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PFY6_9STRA)

HSP 1 Score: 232 bits (592), Expect = 8.310e-72
Identity = 115/178 (64.61%), Postives = 134/178 (75.28%), Query Frame = 1 
Query:    1 RDKEVKRCTLLELVEYINSAHGQQ-------------------------PDDCDPDKDEPLLEEAWPHLQVVYEFLVRFVVSSEVDAKQAKQYVDQALCLQLVDLFDSEDPRERDYLKTILHRVYGKFMMHRAFIRRAVGNAFLRFVYECPRHNGIGELLEILGSIVNGFATPLKKEH 459
            R K++KR TLLELV+Y+N+  GQ+                          DD DP++DEP+LE AWPHLQV YEF +RF+VSSEV+AK A++YVDQ  CLQLV+LFDSEDPRERDYLKTILHR+YGKFM HR+FIRRA+ N F RFVYE  RHNGIGELLEILGSI+NGFA PLKKEH
Sbjct:  106 RQKDLKRQTLLELVDYVNTPAGQKIFTEAIMPDLMAMVSANVCRALPPATDDFDPEEDEPVLEPAWPHLQVAYEFFLRFIVSSEVNAKSARKYVDQKFCLQLVELFDSEDPRERDYLKTILHRIYGKFMSHRSFIRRAISNVFYRFVYETERHNGIGELLEILGSIINGFAIPLKKEH 283
[Close]
BLAST of mRNA_S-firma_F_contig10167.277.1 vs. uniprot
Match: A0A7S0F7B0_9STRA (Serine/threonine protein phosphatase 2A regulatory subunit n=5 Tax=Bacillariophycidae TaxID=33850 RepID=A0A7S0F7B0_9STRA)

HSP 1 Score: 233 bits (593), Expect = 8.890e-72
Identity = 116/178 (65.17%), Postives = 134/178 (75.28%), Query Frame = 1 
Query:    1 RDKEVKRCTLLELVEYINSAHGQQ-------------------------PDDCDPDKDEPLLEEAWPHLQVVYEFLVRFVVSSEVDAKQAKQYVDQALCLQLVDLFDSEDPRERDYLKTILHRVYGKFMMHRAFIRRAVGNAFLRFVYECPRHNGIGELLEILGSIVNGFATPLKKEH 459
            R K++KR TLLELV+Y+N+  GQ+                          DD DP++DEP+LE AWPHLQV YEF +RF+VSSEV+AK AK+YVDQ  CLQLV+LFDSEDPRERDYLKTILHR+YGKFM HR+FIRRA+ N F RFVYE  RHNGIGELLEILGSI+NGFA PLKKEH
Sbjct:  124 RGKDMKRQTLLELVDYVNTPAGQKIFTESVMGDLMAMVSANVCRALPPATDDFDPEEDEPVLEPAWPHLQVAYEFFLRFIVSSEVNAKAAKKYVDQKFCLQLVELFDSEDPRERDYLKTILHRIYGKFMSHRSFIRRAISNVFYRFVYETERHNGIGELLEILGSIINGFAIPLKKEH 301
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10167.277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWJ6_ECTSI2.970e-10298.69Serine/threonine protein phosphatase 2A 57 kDa reg... [more]
A0A6H5J7C6_9PHAE2.520e-8799.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0GE31_9STRA2.300e-7365.17Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7S1Y370_9STRA3.240e-7365.17Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A7S1FZL3_9STRA6.910e-7364.61Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S2V448_9STRA1.510e-7265.73Serine/threonine protein phosphatase 2A regulatory... [more]
A0A7R9WZM9_9STRA4.690e-7264.61Serine/threonine protein phosphatase 2A regulatory... [more]
A0A6S9GHG6_HETAK5.500e-7265.17Serine/threonine protein phosphatase 2A regulatory... [more]
A0A7S2PFY6_9STRA8.310e-7264.61Serine/threonine protein phosphatase 2A regulatory... [more]
A0A7S0F7B0_9STRA8.890e-7265.17Serine/threonine protein phosphatase 2A regulatory... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10167contigS-firma_F_contig10167:147..5238 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7FWJ6
PFAMsB56
Max annot lvl2759|Eukaryota
KEGG koko:K11584
KEGG Pathwayko03015,ko04071,ko04113,ko04114,ko04151,ko04152,ko04261,ko04728,ko05165,map03015,map04071,map04113,map04114,map04151,map04152,map04261,map04728,map05165
GOsGO:0000096,GO:0000159,GO:0000902,GO:0000904,GO:0002682,GO:0002683,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005777,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0008287,GO:0009058,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009653,GO:0009759,GO:0009888,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0010026,GO:0010090,GO:0010565,GO:0010646,GO:0010648,GO:0016043,GO:0016143,GO:0016144,GO:0017144,GO:0018130,GO:0019216,GO:0019217,GO:0019220,GO:0019222,GO:0019438,GO:0019748,GO:0019752,GO:0019757,GO:0019758,GO:0019760,GO:0019761,GO:0023051,GO:0023057,GO:0030154,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031347,GO:0031348,GO:0031974,GO:0031981,GO:0031998,GO:0032000,GO:0032502,GO:0032989,GO:0032991,GO:0033353,GO:0034641,GO:0042278,GO:0042325,GO:0042343,GO:0042430,GO:0042435,GO:0042579,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0045088,GO:0045824,GO:0045834,GO:0045923,GO:0046128,GO:0046320,GO:0046321,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048856,GO:0048869,GO:0050776,GO:0050777,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0050994,GO:0050996,GO:0051174,GO:0051186,GO:0055086,GO:0062012,GO:0062013,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0072521,GO:0080090,GO:0080134,GO:0080183,GO:0090342,GO:0090558,GO:0090626,GO:0097159,GO:1900457,GO:1900458,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901657,GO:1901659,GO:1902494,GO:1903293,GO:2000377
Evalue4.86e-103
EggNOG OGsKOG2085@1|root,KOG2085@2759|Eukaryota
Descriptionprotein phosphatase regulator activity
COG categoryZ
BRITEko00000,ko00001,ko01009,ko03036
Hectar predicted targeting categoryother localisation
Exons5
Model size459
Cds size459
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10167.277.1prot_S-firma_F_contig10167.277.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10167 147..5238 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815545.0542817-CDS-S-firma_F_contig10167:146..2461622815545.0542817-CDS-S-firma_F_contig10167:146..246Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10167 147..246 -
1696949405.332135-CDS-S-firma_F_contig10167:146..2461696949405.332135-CDS-S-firma_F_contig10167:146..246Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10167 147..246 -
1622815545.0706034-CDS-S-firma_F_contig10167:1307..14181622815545.0706034-CDS-S-firma_F_contig10167:1307..1418Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10167 1308..1418 -
1696949405.3525007-CDS-S-firma_F_contig10167:1307..14181696949405.3525007-CDS-S-firma_F_contig10167:1307..1418Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10167 1308..1418 -
1622815545.0865402-CDS-S-firma_F_contig10167:2111..22241622815545.0865402-CDS-S-firma_F_contig10167:2111..2224Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10167 2112..2224 -
1696949405.3602028-CDS-S-firma_F_contig10167:2111..22241696949405.3602028-CDS-S-firma_F_contig10167:2111..2224Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10167 2112..2224 -
1622815545.1004753-CDS-S-firma_F_contig10167:3097..31601622815545.1004753-CDS-S-firma_F_contig10167:3097..3160Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10167 3098..3160 -
1696949405.3678916-CDS-S-firma_F_contig10167:3097..31601696949405.3678916-CDS-S-firma_F_contig10167:3097..3160Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10167 3098..3160 -
1622815545.1148677-CDS-S-firma_F_contig10167:5166..52381622815545.1148677-CDS-S-firma_F_contig10167:5166..5238Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10167 5167..5238 -
1696949405.3754656-CDS-S-firma_F_contig10167:5166..52381696949405.3754656-CDS-S-firma_F_contig10167:5166..5238Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10167 5167..5238 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10167.277.1

>prot_S-firma_F_contig10167.277.1 ID=prot_S-firma_F_contig10167.277.1|Name=mRNA_S-firma_F_contig10167.277.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=153bp
RDKEVKRCTLLELVEYINSAHGQQPDDCDPDKDEPLLEEAWPHLQVVYEF
LVRFVVSSEVDAKQAKQYVDQALCLQLVDLFDSEDPRERDYLKTILHRVY
GKFMMHRAFIRRAVGNAFLRFVYECPRHNGIGELLEILGSIVNGFATPLK
KEH
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mRNA from alignment at S-firma_F_contig10167:147..5238-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10167.277.1 ID=mRNA_S-firma_F_contig10167.277.1|Name=mRNA_S-firma_F_contig10167.277.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=5092bp|location=Sequence derived from alignment at S-firma_F_contig10167:147..5238- (Sphaerotrichia firma ET2_F female)
AGGGATAAGGAGGTTAAGCGCTGCACGCTGCTGGAGCTGGTGGAGTACAT
CAACTCGGCGCACGGGCAGCAGGTGTGGTTCGAGAGAGACACAGGGCGAG
CTAGACAGACAGACAGACAGTCAGATAGACGAAAAGGCAGACATGGTAGA
CAGACAGACAGACAGACAGACAGACAGACAGACATGGTAAACAAAACAGA
CAGACAGGGCTAGTAGGTTTAAGTACCCCGGGGATACCGCCCCTCGTATA
ACAGTGAACTCACACTAAAATAAAGACGCTTAGGGGTCTAGCACTAAAAA
CAAGACACTTGGAGGTCCCACACTGAAACCAAGACACTTGCGGGGCAAAC
CGAACACCAGTAGGGCCCTATCCCAACCCCCACGAAAAATTCAAATTAAA
AGTCTATAGGTACCCAGACTTATGAGACAGAGGAAGTATGAAGTTAATTT
TTCTTTGCGTACCCGGTCACCCGGTCCTTGCTTAGTGTCCTCCATGTTGC
CCAGAAATTGTCCCTAGCCCTGAAGCTGTGGGCTGTTTTTGTTGTTGCTG
TTGGTGGTGGTGGTGGTGGTGGTGGTGCTGTCGTCGTCGTCGTCTTCGCA
TTATAAACCATCCCGAATCTCTCCACCTAGTACCCCCTTTTGTCCGCACT
GGTCCCCAGACACAGAGTAGTCAATTCCCGTGGTCGCAAGCTGTGGTATG
CACGTTAATGTGAAGACAAACAAACACCAACACCACCACGATGACACCAC
CACCACCACGACGACCAATAACAACAACAGCAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACCACAACTACAACTACACTCAAGGCAGCGACGCAAGAAT
TAAACACCATGCCACTCAAGCTGTCCATACTATCATAGTATCCGTCAGAG
AACAATTGAAACAAGCGCCACGCACACAGACCGCAAATCGTAACTATTTA
CACTACCGGTGATTTGGCAGTGCACCTGCAGCGGTGGACCATGCTCATGT
CTAGTGTGATCTCGGCGGGTGCGTCTAGCTACGTGTAGACAAAGGCAGGC
CACGTCTTTTTTGTGTTTGTCGCCCACCCTCGTGTTGACGGTGCGATACC
ATACACCGTTGACCATTTTTCTTCATCAATTTTTCCTCCCGTTTTTGGCC
TGTTCGTCGTCTGCCCCACCGGCCCCCATCCTCCACTACGACGAAATAGC
TAGACGACCCAAACCGGGTCACACAGTCAGTAAGATGGGGGGGGGGGTGA
ACCCCCTCCTGCGGTTGACTGTTGACCCCTGTTTCAAAGCTCGGTGGCTC
CAGCAGCAAGAGGGTGCTTTAATACCCCACTTTTTACAGCAGTACAATAG
CAGATAGCAGCACCGGGTGACGGCGTTTTCGGGAGGTTAGCTGTCTACAC
ACCTATTGTATCGATATTGTCTCCCCAAAACCAAAAAATAAAAAAAAATA
AAACACACAAACATATTAGTATTTTGACGTGCGATCACAAATATATGCGG
TTCGGGTTCAATGCCCATCACGACCCAGTGTCCTCATCCTTCAAACTCCG
CCCTTGGTTGGCTGGTGGGAAAGCGCCCATCGATCTCGGACATGGTGTCG
TTTCGCGGCCAAAATACGGCGTAGGTTCTCTTGTCTTGTGTGCTCGTAGG
GCATCGCCGCTGGAAAGCAGATTGATGCACTCGCTCGCTGTGCGAAGATT
TCTCGATTCAAGTCACTTGGCCGCTCGTGGCAAGTCGGGCGGTTTGTTCC
GTTAGACATGCGTAGCAGCGACGTTGAGCGCTATGATGGCCTCTTCGGTC
CCCTCGCACCTCCCAAAGACCCACAGGTCTGTACGTATGTACGTATACAG
GGCGCTACGCAGTGTTGTACCCCCCCGTACCCCCCCCAAGCAGCGACCGA
GTACCCCCCCCCCCCCCCCCTGCTGTCCGCTGTCCGCCGTCTCGTTTGGC
CAGATATTTACACCGGCAGTAATGCCGGATGTGATCGCCATGGTGAAGGC
GAACATCTGCCGAGCGTTGCCGCCGCAGCCGGACGATTGCGACCCGGATA
AGGACGAGCCTTTGCTCGAGGAGGCGTGGCCCCACCTGCAGGTGAGCGTT
TTAAGGTTTAGGCGGCCCCCCCCCCCCCCCCCCCCGCCCTTGTTGTGGTT
TTTCTGTTTTCTTCGTACACTCTCAAGCAGACGACGCCTACGTACGTCCA
ACACAAACCTGCTCTGTCGGTGGGTTTGTTTTGGTGGTTTCTGTTTTCTT
CGTATACTCTCAAGCAGACGACGCCCGTGTACAACACAAGCCTGCTGTGT
CGGTGGGTTAGTTTTTTGTCCCGCGATTGTGGGCAGGTTTTTTGTTGCCC
GACGTGATGGCGTCGGCGTCCAGTTTTTTTTGTGTTGGCTCTCCTCGCTG
GTCCGCTCCACCCCTTGGAAGCGAAGCAGCCCTCGTGCTGTCTGCGTGCC
CCCCGCGGAGAAGGTGGTGCGCCCGTCGGCGCTGCTCTGGTCAGGTCGCG
AACGCCCCGTGCAATCCGCTGTCGCTGTTGTGGTTGCACCCCTCCGTTGT
TCCGCGGGACCCCTTTCCCACCCCCCAATCACACGGCTGCGCTCCGCGGC
GGTGTGGTGTCATGCAGGCGTCCCCTCCACTCCCCTGCCCTGCCCTGCCC
TGCCCTGCCGGCCGCGTAGCTTCACCCCCCCCCCCCCCCTCTCTGCTGAC
CCTGTCCCCGCTCTTGCTCACGCCTGCCGTGCCCCGTGGCGAACGAACCT
CGTCTTTTTTTGTTTTCGACCGACAACCCTTGGATGGGGTGCGGTGCGGT
GCGGTGCGGCATGGTACGGTATGGCATGGTATGGTATGGTACGGTGCGGT
ATGGTACGGTGCGGTGCGGTATGGTACGGTGCGGTACGGTATGGTTGGGT
ATGGTACGGTATGGTGCGGTACGGTACGGTGCGGTGCGGTGGGGTCGGGT
GCGATGCGGCGCAGGTTGTGTACGAGTTTCTGGTCCGGTTTGTCGTCTCG
TCGGAGGTGGACGCGAAGCAGGCGAAGCAGTACGTCGACCAGGCCTTGTG
CTTGCAGCTCGTCGACCTCTTCGACAGGTGTGTGTTTGTGTCTGTGTCTT
TGTCTGTGTGTGCGTGTGTGTGTCTGTGTCTGTGTCTGTGTGTGCGGGTG
TGTGTGTCTGTGTGTGTCTGTGAGTGTGTTTCTGTGTGTGTGTTTCTTTT
AAATAATCATCGCCCACGCTAATCGGTTGACCAATGAAAAGACGCAAGCG
TTCAGCGGGGTGGAAACGCAAACACGCTTTCTAAGTGTTGGAAACCCTTA
AATGTGTGTGTGTGTGCATGCGTTTGTCTCGAATAGGAAACAGTCGTGGA
CGTGTTGGGTATCGTTGACCTTGGCCTAAAGCGGGAAAGGGGCGCGGGGG
GGAGGGTATTGGGCGTATTTTGCGAGGGACAGTGGGGGTAGAGGTTGGCG
CGGATTCCCACCTCCGACCCCCCGTCAGATGGCCGTGTCGATTGCGTCGG
TAAATACTCCGGAGAAATAAGTTTGAGGCGATATCTCTCTCTTTATATAC
TGTATACTCGAAGTATGTTGTTAGCCAAAGACCACGCGTTGGCGTGGGGA
CCACCCGAAGCAATACGGCGCGAGTTTCAACGCTCTTTCGCGGTTTCAAT
CAGCACCAACACCCACACTTGCAGTTCAGTAACGCCACTACTTTATATGA
TGAGTCCCAACGCCAACGAAACGCCTGTTCGTGCACGTGGGCCGTTTGCA
TCTACTGCTGTGCGAATTAGTGAGGACCCGCGGGAGCGGGACTACCTCAA
GACGATCCTCCACAGGGTGTACGGAAAGTTCATGATGCACAGAGCTTTCA
TCCGGCGAGCAGTGGGGAACGCCTTCCTGAGGTAGGAAGACGTGTTGCGT
CGTAAGATGTTTTGTTGCAAGTGCTAGAATTCCCCGGTACTACGTCCTAT
TATTGGTGGATTTACTCCGTCATTTGTTGTGGTAGCTTTTAAAATACATT
TTCTGCAAACGTCCGTCCTGTGAATAAATCGTTCCAGGGGGACTGTGTAT
ATACACACTAACCCTCCCCCTCCCCGTCCCAGCCAACAGCACAAAATCCG
CAATACGTTAGGTTTGTTGGTTGTTTTGTTTCGTAGGTTGTAAGGGGGTA
TGTCATGCAGCGTACGTGTGTTGTCTTCAGTACGATCACCGGAAGTGGAA
TAAAAAAAAGTTGCTCTTTTTTGAGAGGAAAAAGTCAGCCAGCACAGCGT
TCACTGGACTGACGTCCCCCTGTTCTTGGGGGCGCTGCTTGTTTTTTTTT
GTTATTTTGCTGTTGCTGTTTTGGGTTGTGCAGTAGGATAGATGCGCGCG
CACTCCTCAGAGGCCGGTGTGAGCTCTTGCTTCGGGTCTGCGCTGTCGCG
ATTGCCGTCATGTCGTGATGAGTAATGAGCGTTTCGTTTTCCATGTTCGG
TTCTTGTTGTTGTTGTTGTTGGTGTTGGTGGTGGTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTGTGGTTGTTGTTGTCGTCTTAACATTAAAATC
CATTCCGAACCTCTCCACCCAGTGATCTACCCCCTTTTGTCCCTACCTAC
TGACCCGCACGTACGGTCAAATTACGTGGCCGCAAGCTGTTAGGGTTAAG
GTTAGGGTTAGGGTAGGGGCCTGATCCCAACGACCTGTTGTGTGCTAGTT
TTAGCATCCGCGCCGCTGCGTGGAAGAAGGTCCCGATGGCGATCGACTCC
GTTTTTCGGGTTTGACGACTGCCACCAATCGAATCAATGACGGCGGTTCC
CTTGATGTTTCTTATCCGCGCTTGCGGCCTCAACTCAAAGAATGCGGTTC
ACTTGATGTTTGTTGTGTGCGTGTGTGGCCTGACTTCTCACGCTTTTTTA
TCCCCCCCCCCATGTTTCACACCGACCCACCACCACCTTTAGGTTTGTGT
ACGAGTGCCCTCGACACAATGGGATCGGGGAGTTGCTGGAGATCCTGGGG
AGCATCGTCAACGGGTTCGCGACTCCGTTGAAGAAGGAGCAC
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Coding sequence (CDS) from alignment at S-firma_F_contig10167:147..5238-

>mRNA_S-firma_F_contig10167.277.1 ID=mRNA_S-firma_F_contig10167.277.1|Name=mRNA_S-firma_F_contig10167.277.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=918bp|location=Sequence derived from alignment at S-firma_F_contig10167:147..5238- (Sphaerotrichia firma ET2_F female)
AGGGATAAGGAGGTTAAGCGCTGCACGCTGCTGGAGCTGGTGGAGTACAT
CAACTCGGCGCACGGGCAGCAGAGGGATAAGGAGGTTAAGCGCTGCACGC
TGCTGGAGCTGGTGGAGTACATCAACTCGGCGCACGGGCAGCAGCCGGAC
GATTGCGACCCGGATAAGGACGAGCCTTTGCTCGAGGAGGCGTGGCCCCA
CCTGCAGCCGGACGATTGCGACCCGGATAAGGACGAGCCTTTGCTCGAGG
AGGCGTGGCCCCACCTGCAGGTTGTGTACGAGTTTCTGGTCCGGTTTGTC
GTCTCGTCGGAGGTGGACGCGAAGCAGGCGAAGCAGTACGTCGACCAGGC
CTTGTGCTTGCAGCTCGTCGACCTCTTCGACAGGTTGTGTACGAGTTTCT
GGTCCGGTTTGTCGTCTCGTCGGAGGTGGACGCGAAGCAGGCGAAGCAGT
ACGTCGACCAGGCCTTGTGCTTGCAGCTCGTCGACCTCTTCGACAGTGAG
GACCCGCGGGAGCGGGACTACCTCAAGACGATCCTCCACAGGGTGTACGG
AAAGTTCATGATGCACAGAGCTTTCATCCGGCGAGCAGTGGGGAACGCCT
TCCTGAGTGAGGACCCGCGGGAGCGGGACTACCTCAAGACGATCCTCCAC
AGGGTGTACGGAAAGTTCATGATGCACAGAGCTTTCATCCGGCGAGCAGT
GGGGAACGCCTTCCTGAGGTTTGTGTACGAGTGCCCTCGACACAATGGGA
TCGGGGAGTTGCTGGAGATCCTGGGGAGCATCGTCAACGGGTTCGCGACT
CCGTTGAAGAAGGAGCACGTTTGTGTACGAGTGCCCTCGACACAATGGGA
TCGGGGAGTTGCTGGAGATCCTGGGGAGCATCGTCAACGGGTTCGCGACT
CCGTTGAAGAAGGAGCAC
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