mRNA_S-firma_F_contig10166.276.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10166.276.1
Unique NamemRNA_S-firma_F_contig10166.276.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10166.276.1 vs. uniprot
Match: A0A6H5KI44_9PHAE (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI44_9PHAE)

HSP 1 Score: 249 bits (637), Expect = 1.100e-67
Identity = 122/148 (82.43%), Postives = 133/148 (89.86%), Query Frame = 1
Query:    1 VVRTAYDETVQGQSVMPTRGFGDLYYKQRKGEDGMLLPPAEQVVTVCPEIMVHERGSSQQEELLLLACDGVWDVFSDQDAGEFLVSMLDVPVAEVTGEHLALACDALVQEALVRGSTDNITAVAVSLGSGPPXXPSAVGGRVLFSDGQ 444
            VVRTAYD+ V+GQSV+PTRGFGDLYYKQRK +DG LLPPA+QVVT CPEIMVHERGSS +EELLLLACDGVWDVF +QDAGEFLV  LDVPV +VTGE LALACDALV+E L RGSTDNITA+AVSLGSGPP  PS+ GGRVLFSDGQ
Sbjct:  995 VVRTAYDDKVEGQSVVPTRGFGDLYYKQRKDDDGNLLPPAQQVVTSCPEIMVHERGSSGKEELLLLACDGVWDVFDNQDAGEFLVKTLDVPVGQVTGEQLALACDALVKECLRRGSTDNITAMAVSLGSGPPPRPSSAGGRVLFSDGQ 1142          
BLAST of mRNA_S-firma_F_contig10166.276.1 vs. uniprot
Match: D8LND4_ECTSI (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LND4_ECTSI)

HSP 1 Score: 216 bits (550), Expect = 1.420e-56
Identity = 110/148 (74.32%), Postives = 116/148 (78.38%), Query Frame = 1
Query:    1 VVRTAYDETVQGQSVMPTRGFGDLYYKQRKGEDGMLLPPAEQVVTVCPEIMVHERGSSQQEELLLLACDGVWDVFSDQDAGEFLVSMLDVPVAEVTGEHLALACDALVQEALVRGSTDNITAVAVSLGSGPPXXPSAVGGRVLFSDGQ 444
            VVRTAYD+ V+GQSV+PTRGFGDLYYKQR                   EIMVHERGSS QEELLLLACDGVWDVF DQDAGEFLV  LDVPV +VTGE LALACDALV E L RGSTDNITA+AVSLGSGPP  PS+ GGRVLFSDGQ
Sbjct:  775 VVRTAYDDKVEGQSVVPTRGFGDLYYKQRXXXXXXXXXXXXXXXXXXXEIMVHERGSSGQEELLLLACDGVWDVFKDQDAGEFLVKTLDVPVGQVTGEQLALACDALVNECLRRGSTDNITAMAVSLGSGPPPRPSSAGGRVLFSDGQ 922          
BLAST of mRNA_S-firma_F_contig10166.276.1 vs. uniprot
Match: A0A835YR40_9STRA (Phospholipase A(2) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR40_9STRA)

HSP 1 Score: 134 bits (336), Expect = 8.630e-29
Identity = 76/141 (53.90%), Postives = 91/141 (64.54%), Query Frame = 1
Query:    1 VVRTAYDETVQGQSVMPTRGFGDLYYKQRKGEDGMLLPPAEQVVTVCPEIMVHER----GSSQ-----QEELLLLACDGVWDVFSDQDAGEFLVSMLD--VPVAEVTGEHLALACDALVQEALVRGSTDNITAVAVSLGSG 390
            V+R  Y    +GQSV+P+R FGD YYKQ    DG LL P +QVVT  PE+ + ER    GSS      Q++ LLLACDG+WDVFS QDAGE L  +L    P    TGE LA+ACDAL+ EAL R S DNIT +A+ L SG
Sbjct:  987 VLRIKYCAEAKGQSVVPSRSFGDFYYKQCCDADGQLLSPDKQVVTAFPEVRIVERPRSSGSSPALGGVQDQYLLLACDGLWDVFSSQDAGEMLWRILQDLCPARTPTGEDLAIACDALIAEALKRKSEDNITVMAIRLASG 1127          
BLAST of mRNA_S-firma_F_contig10166.276.1 vs. uniprot
Match: A0A7S2XJ05_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XJ05_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 3.680e-13
Identity = 43/110 (39.09%), Postives = 64/110 (58.18%), Query Frame = 1
Query:   52 TRGFGDLYYKQRKGEDGMLLPPAEQVVTVCPEIMVHERGSSQQEELLLLACDGVWDVFSDQDAGEFLVSMLDVPVAEVTGEHLALACDALVQEALVRGSTDNITAVAVSL 381
            +RG GD  +K R       LPP +Q VT CPEI+V  R SSQ +E ++LACDG+WDV S++   + + ++LD    ++      L C+ ++   L R S DN+T   V+L
Sbjct:   64 SRGLGDFSFKNRPD-----LPPDQQKVTCCPEILVEPRQSSQ-DEFIILACDGIWDVASNESCAKLVHAILDEGETDI-----GLVCEEILDTCLERDSRDNMTVAMVTL 162          
BLAST of mRNA_S-firma_F_contig10166.276.1 vs. uniprot
Match: A0A0R3X9M6_HYDTA (PPM-type phosphatase domain-containing protein n=1 Tax=Hydatigena taeniaeformis TaxID=6205 RepID=A0A0R3X9M6_HYDTA)

HSP 1 Score: 75.9 bits (185), Expect = 4.260e-12
Identity = 46/115 (40.00%), Postives = 65/115 (56.52%), Query Frame = 1
Query:   61 FGDLYYKQRKGEDGMLLPPAEQVVTVCPEIMVHERGSSQQEELLLLACDGVWDVFSDQDAGEFLVSMLDVPVAEVTGEHLALACDALVQEALVRGSTDNITAVAVSLGSGPPXXP 405
             GD  YKQ KG+      PA+Q+V+  P++    R  S+ +ELL+LACDGVWDVFS+    E+L+  L    +      L+ AC+  +  AL +GS DN+T + V L S P   P
Sbjct:   17 LGDFDYKQIKGQS-----PADQLVSPEPDVTAIARVKSE-DELLVLACDGVWDVFSNDQLCEYLIHRLKCSCS------LSEACEETIDTALFKGSRDNMTMLIVGLDSVPTPDP 119          
BLAST of mRNA_S-firma_F_contig10166.276.1 vs. uniprot
Match: UPI001BB28531 (protein phosphatase 1B-like isoform X3 n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB28531)

HSP 1 Score: 78.2 bits (191), Expect = 5.690e-12
Identity = 46/131 (35.11%), Postives = 74/131 (56.49%), Query Frame = 1
Query:   22 ETVQGQSVMPTRGFGDLYYKQRKGEDGMLLPPAEQVVTVCPEIMVHERGSSQQEELLLLACDGVWDVFSDQDAGEFLVSMLDVPVAEVTGEHLALACDALVQEALVRGSTDNITAVAVSLGSGPPXXPSAV 414
            E V G S+  +R  GD  YK         +PP EQ+V+  PE+ V ER  + +EE ++LACDG+WDV S+++  +F+ S L +       +HLA  C+ +++  L +GS DN++ V V+  + P     A+
Sbjct:  190 ERVNG-SLAVSRALGDYDYKNNPK-----IPPTEQLVSAEPEVTVIER--TDEEEFIVLACDGIWDVMSNEELCQFIRSRLAIT------DHLAEICNQVIETCLQKGSRDNMSIVIVTFQNAPEVSQDAL 306          
BLAST of mRNA_S-firma_F_contig10166.276.1 vs. uniprot
Match: A0A7S4IS57_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IS57_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.320e-11
Identity = 49/132 (37.12%), Postives = 70/132 (53.03%), Query Frame = 1
Query:   31 QGQSVMPTRGFGDLYYKQRKGEDGMLLPPAEQVVTVCPEIMVHERGSSQQEELLLLACDGVWDVFSDQDAGEFLVSMLDVPVAEV----------TGEHL-ALACDALVQEALVRGSTDNITAVAVSLGSGP 393
            +G  +  +R FGD  +K         LPP EQ V   P++ +H R  +  +  L+LACDGVWDV S+++ G+F+   +D   +E+            E L     D L++E L RGSTDN+TAV VSL   P
Sbjct:  248 KGDRLGMSRAFGDYDFKANAD-----LPPEEQAVVCTPDLRIHPRDGTM-DLYLVLACDGVWDVMSNEEVGQFVHGRVDRIRSEMGRGGADGHEDADEGLWGTVADQLLEECLGRGSTDNMTAVIVSLEKAP 373          
BLAST of mRNA_S-firma_F_contig10166.276.1 vs. uniprot
Match: A0A7R8ZLM5_9CRUS (Hypothetical protein n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8ZLM5_9CRUS)

HSP 1 Score: 74.3 bits (181), Expect = 2.640e-11
Identity = 47/120 (39.17%), Postives = 64/120 (53.33%), Query Frame = 1
Query:   55 RGFGDLYYKQRKGEDGMLLPPAEQVVTVCPEIMVHERGSSQQEELLLLACDGVWDVFSDQDAGEFLVSMLDVPVAEVTGEHLALACDALVQEALVRGSTDNITAVAVSLGSGPPXXPSAV 414
            R  GD  YKQ +G+      P EQ+V+  PEI V ER  +  +E L+LACDG+WDV S+ D  EF+ S L V       E L+   + +V   L +GS DN++ V V     P    +AV
Sbjct:   50 RALGDFVYKQVEGKG-----PTEQLVSPEPEITVQERQLT--DEFLVLACDGIWDVMSNDDVCEFIRSRLKVT------ESLSQVANEVVDTCLYKGSQDNMSIVLVKFEGAPKLDEAAV 156          
BLAST of mRNA_S-firma_F_contig10166.276.1 vs. uniprot
Match: A0A1Z5KEX2_FISSO (PPM-type phosphatase domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KEX2_FISSO)

HSP 1 Score: 77.8 bits (190), Expect = 2.750e-11
Identity = 48/138 (34.78%), Postives = 73/138 (52.90%), Query Frame = 1
Query:    4 VRTAYDETVQGQSVMPT-RGFGDLYYKQRKGEDGMLLPPAEQVVTVCPEIMVHERGSSQQEELLLLACDGVWDVFSDQDAGEFLVSMLDVPVAEVTGEHLALACDALVQEALVRGSTDNITAVAVSLGSGPPXXPSAV 414
            V+T Y   +  ++++ T R FGD  YK  K      LP  EQ V   P+++V +R  S+ +  +++ACDG+WDV S Q  G+F++  +    A+ +   L    D L+QE L  GS DN++ V VSL       P  V
Sbjct:  450 VQTLYKVALSKENLLATSRAFGDFEYKTNKD-----LPADEQAVVAVPDVVVRQR--SKDDLFMVVACDGIWDVMSPQQVGDFVLQNMTTE-AKQSKVALVDVADKLLQECLNLGSRDNMSVVVVSLSDASELPPRKV 579          
BLAST of mRNA_S-firma_F_contig10166.276.1 vs. uniprot
Match: A0A068YIP0_ECHMU (Protein phosphatase 1b n=4 Tax=Taeniidae TaxID=6208 RepID=A0A068YIP0_ECHMU)

HSP 1 Score: 76.6 bits (187), Expect = 2.890e-11
Identity = 47/122 (38.52%), Postives = 68/122 (55.74%), Query Frame = 1
Query:   40 SVMPTRGFGDLYYKQRKGEDGMLLPPAEQVVTVCPEIMVHERGSSQQEELLLLACDGVWDVFSDQDAGEFLVSMLDVPVAEVTGEHLALACDALVQEALVRGSTDNITAVAVSLGSGPPXXP 405
            S+  +R  GD  YKQ KG+      PA+Q+V+  P++    R   + +ELL+LACDGVWDVFS+    E+L+  L    +      L+ AC+  +  AL +GS DN+T + V L S P   P
Sbjct:  190 SLAVSRALGDFDYKQIKGQS-----PADQLVSPEPDVTAIARVKVE-DELLVLACDGVWDVFSNDQLCEYLIHRLKCSCS------LSEACEETIDTALFKGSRDNMTMLIVGLDSMPTPDP 299          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10166.276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KI44_9PHAE1.100e-6782.43PPM-type phosphatase domain-containing protein n=1... [more]
D8LND4_ECTSI1.420e-5674.32PPM-type phosphatase domain-containing protein n=1... [more]
A0A835YR40_9STRA8.630e-2953.90Phospholipase A(2) n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7S2XJ05_9STRA3.680e-1339.09Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A0R3X9M6_HYDTA4.260e-1240.00PPM-type phosphatase domain-containing protein n=1... [more]
UPI001BB285315.690e-1235.11protein phosphatase 1B-like isoform X3 n=1 Tax=Lyt... [more]
A0A7S4IS57_9STRA2.320e-1137.12Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7R8ZLM5_9CRUS2.640e-1139.17Hypothetical protein n=1 Tax=Cyprideis torosa TaxI... [more]
A0A1Z5KEX2_FISSO2.750e-1134.78PPM-type phosphatase domain-containing protein n=2... [more]
A0A068YIP0_ECHMU2.890e-1138.52Protein phosphatase 1b n=4 Tax=Taeniidae TaxID=620... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10166contigS-firma_F_contig10166:1216..4915 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LND4
Preferred namePP2C
PFAMsPP2C
Max annot lvl2759|Eukaryota
KEGG koko:K01090,ko:K04457,ko:K04461,ko:K17499,ko:K17506
KEGG Pathwayko04010,ko04013,map04010,map04013
Evalue2.51e-55
EggNOG OGsCOG0631@1|root,KOG0697@2759|Eukaryota
EC3.1.3.16
Descriptionmanganese ion binding
COG categoryT
BRITEko00000,ko00001,ko01000,ko01009
Hectar predicted targeting categoryother localisation
Exons3
Model size1904
Cds size402
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10166.276.1prot_S-firma_F_contig10166.276.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10166 2673..4870 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815544.9693072-UTR-S-firma_F_contig10166:1215..26721622815544.9693072-UTR-S-firma_F_contig10166:1215..2672Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10166 1216..2672 -
1696949405.2454772-UTR-S-firma_F_contig10166:1215..26721696949405.2454772-UTR-S-firma_F_contig10166:1215..2672Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10166 1216..2672 -
1622815545.0187626-UTR-S-firma_F_contig10166:4870..49151622815545.0187626-UTR-S-firma_F_contig10166:4870..4915Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10166 4871..4915 -
1696949405.3155277-UTR-S-firma_F_contig10166:4870..49151696949405.3155277-UTR-S-firma_F_contig10166:4870..4915Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10166 4871..4915 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815544.981062-CDS-S-firma_F_contig10166:2672..28371622815544.981062-CDS-S-firma_F_contig10166:2672..2837Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10166 2673..2837 -
1696949405.27059-CDS-S-firma_F_contig10166:2672..28371696949405.27059-CDS-S-firma_F_contig10166:2672..2837Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10166 2673..2837 -
1622815544.9932106-CDS-S-firma_F_contig10166:3864..40201622815544.9932106-CDS-S-firma_F_contig10166:3864..4020Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10166 3865..4020 -
1696949405.2819762-CDS-S-firma_F_contig10166:3864..40201696949405.2819762-CDS-S-firma_F_contig10166:3864..4020Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10166 3865..4020 -
1622815545.0060854-CDS-S-firma_F_contig10166:4789..48701622815545.0060854-CDS-S-firma_F_contig10166:4789..4870Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10166 4790..4870 -
1696949405.2995076-CDS-S-firma_F_contig10166:4789..48701696949405.2995076-CDS-S-firma_F_contig10166:4789..4870Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10166 4790..4870 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10166.276.1

>prot_S-firma_F_contig10166.276.1 ID=prot_S-firma_F_contig10166.276.1|Name=mRNA_S-firma_F_contig10166.276.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=134bp
MPTRGFGDLYYKQRKGEDGMLLPPAEQVVTVCPEIMVHERGSSQQEELLL
LACDGVWDVFSDQDAGEFLVSMLDVPVAEVTGEHLALACDALVQEALVRG
STDNITAVAVSLGSGPPPPPSAVGGRVLFSDGQ*
back to top

mRNA from alignment at S-firma_F_contig10166:1216..4915-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10166.276.1 ID=mRNA_S-firma_F_contig10166.276.1|Name=mRNA_S-firma_F_contig10166.276.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3700bp|location=Sequence derived from alignment at S-firma_F_contig10166:1216..4915- (Sphaerotrichia firma ET2_F female)
GTGGTGCGAACCGCCTATGACGAGACGGTGCAGGGCCAGAGCGTCATGCC CACCAGGGGCTTCGGCGACCTGTACTACAAGCAAAGGAAGGGGGAAGACG GGATGCTCCTGCCTCCGGCGGAGCAGGTGCGTAAGCTTCTGTGGGCTCTC TCTTTCTTTCTCTCTCCCACTCTCTCTCTGTGTGTGTGTGTGTGTGTGTG TGCGTCTCTTTTGTGCCCGGCGGCCTAGCAAGGCTTCGGTGCCACCAGCG TGTCGTGTGTTTATTTTCCTGGGCGAATTTCGTTTCGTCGGGCCCTCTTC ACTATTGATTCATCTGTTCGATACCGCGACTCTTCCGCGCGGGAGTCAGG AAGTCTGCGTACGTGTTTGTGTTTGTGTGTGTGTTTTTTTTCAAGCAAGT TCCCCCAAGGACCCAGTCCGTCCGCAACACGCAGCCAAGAGACGGAGAAT GGGGGAAGTGTATTTACTGTACGCAGCCCTTGTATTTTTTTCGGGGAGGT GTGCCTGCTCCTAGACTTAGTTGGTTTTCTTGTTGGGGGCTTTGCGCAGA CGTTCACGTTTGATACTATACGTGCGTCTCGAGATCACTCGCATCAACCC GAGCACCACAAAACGCACGCTGGAGACTCGCAGCAAACGGCACCTTTTCG AATGCAACACACACGCACACAATCAATCAATCCGCGCACCAAAAAAAACG CTCTGGAGACTCGCAGCAAACGGCACCTTTTCGAACGCAACACACACGCA CACACACACACACACACACACACACACACGAGTTTCTTTGCGACGACTGC TGTGCCCAGTTTTTGTGACCACGGGCTCCCACGGGTGTTTTTGGAATAAT TTATAGAGCTTATGTGAGAAACAAACAAAACACGCACACGCACAGGTCGT GACGGTCTGCCCCGAGATCATGGTTCACGAGCGCGGCTCAAGCCAGCAGG AGGAGCTGCTCCTGCTAGCCTGCGACGGCGTCTGGGACGTCTTCAGCGAC CAGGACGCCGGGGAGTTTCTGGTGTCGATGCTGGACGTGCCTGTGGCAGA GGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCG TGCGTGCGTGCGGCACTTGTGTGTGCGCGCTCGTAACAAATTTCCGCTCG CGGCGTCTGTTGATTGATGTGATTTTTATGTATGTGTGTACGGTGTTTTT GTTAGATTTGTATGCATGTATGTGCGGTGTTTTTGTGAGATTTGTATGCG TGTATGTGCGGTGTTTTTGGTAGGGTCGGGGGTGGGATGGAGCTGCTTGC TCTCTCGGGTGTTTTTTTTTCTGCTGGGATTCGACGGTGGGTGTTCGTTC TCCGAGAGGGATACGAAGGCGCCTGCGTGCACGGAAGCAAGGAGCGCAGA TCGCTTGATACCGCGCTTTTAAGGGAGTGGGGGTCTCTTGCGTGCGGCGC GAGCTGTAGCTGGGGAGGAAGGAAGGCAGGCTTGTGATCATCGCTTCCGT TGCGGACTCTACACAGCAGAGGAGGCTCTCTCTTGTTGCCCGACGCTCGC GTCTATTTCCTTTGTTTCCCCTCCGCGTTACTTGCGCAATCGAGATCCAA CAGCCTACTGGGTATCTCCACAACATGCGCTCACTCCGTGTCTCCCTGCC GTCGTCTGAGGCAAAAAAAAAAAAAAAGCCGATAAACGGCAAACCCGTCC GCGTGCTATATAGGTACCAGTAGGTGGTTTGCCTTTTGCCAACCGGACCC TACACGACACGAACACGACCCTCAAATCCGCCAACACCGAACCCGACAAA TCGTAACGATTTTACGGAGGGTTTCTCCTTACGGAGGGTTTCTTCTCCCC GATATATTTGTTGTTTGGCTTGTGGCAGAGCTGCGCAAGGTTGGTGACGA AATCATCTTTCAAACAAGCACGGTAGGTGTTTTTCTACTCGGCCGGCCCC ATTATTGCATCACTGCACGGAATGAATACCGTTCTGAGCCCACGGAGTCA GTCCCGTCTCCAATGTGGGGAGGTTCTGTCTTTGATTCGATTCCTCGATC TTCTGTCAAAACGATCGATCCGACGCAGGTGACCGGAGAGCACCTTGCCC TCGCCTGCGACGCCCTCGTGCAAGAGGCCCTGGTCAGGGGGTCGACCGAC AACATCACCGCCGTGGCGGTGTCGCTCGGGTCGGGCCCGCCGCCCCCGCC GTCGGCCGTCGGCGGAAGAGTGCTGTTCAGCGACGGCCAGTAGTAGGTGG TGTGGGATTTTATTCTTTTTTTTTCGTTTTCTCCTCCCTTTAGTGTTTTT CTGTCGTCTGCCACACTGGCCCCCATCCTCCACTACGACTAGTTAGACGA CCCACCCGGGGTCACACAGGAGGGGGGGGGTTGGACCCCCTCCTACGGGA TATGGTGTACCAGTTCGCATCATCATGCCGTGCGACGAGCCTGCTCTTGT GTCGGGCCGTGTCATGTCCCGCCCGAAGTGCTGCTGTAGTCGGGGTCTTT TAGTCTTTGTCTGCCCGGGGCGGTGGGGGGTGGTTGTTGACCCAAGCTAG TCGGCAGGCCGGCGCTCAGAAGGTTCCCACCATTTTCCGGGCCAAGTCGC TTTTTGTCAGTACGGGGGGGGGGGGGGGGCGTTAGTGGGTTACAATGGCG TGAAAATGCATGTATGAATGTTTGGAGCTTTTGGGTACCCTCGTTAAGTG CCGTCTATCCTCGCATCCGCATCGCAATGGTAGGCAGGTAGAAAGCCGGG CAGTAAAGAGCGACGGACGGGAGATGGGAATGACTGCCCCGGTAGATGCT CCCCTCCGGCAAATCAGGCGCCGGCCGGCCTCCTAGACACCGAGGTTGAG GTTGAGATTGTTTAGTCTCGACTTGTTCGAGTCTCAACCGCAGCGACGAG TGAGTGGTCCGCCGAGTCGCGCACCGTTGTTTGTATCGCGTGGCGAGGGC GGTCCTGTGGTGCAGCCGGCGGGCCGCATTCTTTTTTAAATATATTTTCT ACATACGTCAGCCGTGTATGTCCGTCCTGTGAAAAATTCGCCCCATGGGC ACTGCTCTCTGGTCTCCTTCTTACTTGCAATTGCAAGAGCGCTTCGGTTT CGCGGCGAGCTGGTGGTTCGGGGTGTTTGCGATATTCTTTCTTCTTGGAG ACTCGTGCGTTCCTTTCTGAGTCAAGCAGGCCTTCATATGATACGTGCAT GGTTCTCTCAGGTGCTTGATGGGTGCCGAAGGAGCTGCTCTTAAGTAGTG CGTGCGTAAGATCGGGTGTATGGCAAAACGAAAATTGCGGTTGCTTGTTG GCGGCACTACTACCGTAAGAGCGGGCACCCGGTAGGCCTTCAAAACCTTA CCATTTGCATCACCACTTGCAGCACTCACAGCCCCGAATTTGTGTGTACT GGCGGCGATTCGCCATAGTGTAGGTTGGCGTTTTTTGGGCGGTGAGTGGA CAGTAGAATGAGCGAATGCGTCAGGACGGGTAGCGGATAGTGCAGAGGGC GAGAGCGAGGAGCGTGGGGCAGGGGCGCTCTGTTGCACAGGTTTTGCGTC ATGCGCAAGAGGCAAAAATAAGAATGGATCGGTTGATCGCTGCGAGAGAA AAGGAAAAGATGCCCGCAGTTTTCTGATTGGAACGTTGCAGGTCGTCCAT CTAGAGCAGTAGCACTGTGGCAAGCGTTCTTCACGTGGGACGGAGACAAG
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig10166:1216..4915-

>mRNA_S-firma_F_contig10166.276.1 ID=mRNA_S-firma_F_contig10166.276.1|Name=mRNA_S-firma_F_contig10166.276.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=804bp|location=Sequence derived from alignment at S-firma_F_contig10166:1216..4915- (Sphaerotrichia firma ET2_F female)
ATGCCCACCAGGGGCTTCGGCGACCTGTACTACAAGCAAAGGAAGGGGGA
AGACGGGATGCTCCTGCCTCCGGCGGAGCAGATGCCCACCAGGGGCTTCG
GCGACCTGTACTACAAGCAAAGGAAGGGGGAAGACGGGATGCTCCTGCCT
CCGGCGGAGCAGGTCGTGACGGTCTGCCCCGAGATCATGGTTCACGAGCG
CGGCTCAAGCCAGCAGGAGGAGCTGCTCCTGCTAGCCTGCGACGGCGTCT
GGGACGTCTTCAGCGACCAGGACGCCGGGGAGTTTCTGGTGTCGATGCTG
GACGTGCCTGTGGCAGAGGTCGTGACGGTCTGCCCCGAGATCATGGTTCA
CGAGCGCGGCTCAAGCCAGCAGGAGGAGCTGCTCCTGCTAGCCTGCGACG
GCGTCTGGGACGTCTTCAGCGACCAGGACGCCGGGGAGTTTCTGGTGTCG
ATGCTGGACGTGCCTGTGGCAGAGGTGACCGGAGAGCACCTTGCCCTCGC
CTGCGACGCCCTCGTGCAAGAGGCCCTGGTCAGGGGGTCGACCGACAACA
TCACCGCCGTGGCGGTGTCGCTCGGGTCGGGCCCGCCGCCCCCGCCGTCG
GCCGTCGGCGGAAGAGTGCTGTTCAGCGACGGCCAGTAGGTGACCGGAGA
GCACCTTGCCCTCGCCTGCGACGCCCTCGTGCAAGAGGCCCTGGTCAGGG
GGTCGACCGACAACATCACCGCCGTGGCGGTGTCGCTCGGGTCGGGCCCG
CCGCCCCCGCCGTCGGCCGTCGGCGGAAGAGTGCTGTTCAGCGACGGCCA
GTAG
back to top