mRNA_S-firma_F_contig10166.275.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10166.275.1
Unique NamemRNA_S-firma_F_contig10166.275.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10166.275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10166contigS-firma_F_contig10166:1213..2288 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1077
Cds size633
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815544.9128199-CDS-S-firma_F_contig10166:1212..18451622815544.9128199-CDS-S-firma_F_contig10166:1212..1845Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10166 1213..1845 +
1696949405.216872-CDS-S-firma_F_contig10166:1212..18451696949405.216872-CDS-S-firma_F_contig10166:1212..1845Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10166 1213..1845 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815544.930226-UTR-S-firma_F_contig10166:1845..22881622815544.930226-UTR-S-firma_F_contig10166:1845..2288Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10166 1846..2288 +
1696949405.2268074-UTR-S-firma_F_contig10166:1845..22881696949405.2268074-UTR-S-firma_F_contig10166:1845..2288Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10166 1846..2288 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10166.275.1prot_S-firma_F_contig10166.275.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10166 1213..1845 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10166.275.1

>prot_S-firma_F_contig10166.275.1 ID=prot_S-firma_F_contig10166.275.1|Name=mRNA_S-firma_F_contig10166.275.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=211bp
PLVSVPREERLPQCYCSRWTTCNVPIRKLRASFPFLSQRSTDPFLFLPLA
HDAKPVQQSAPAPRSSLSPSALSATRPDAFAHSTVHSPPKKRQPTLWRIA
ASTHKFGAVSAASGDANGKVLKAYRVPALTVVVPPTSNRNFRFAIHPILR
THYLRAAPSAPIKHLREPCTYHMKACLTQKGTHESPRRKNIANTPNHQLA
AKPKRSCNCK*
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mRNA from alignment at S-firma_F_contig10166:1213..2288+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10166.275.1 ID=mRNA_S-firma_F_contig10166.275.1|Name=mRNA_S-firma_F_contig10166.275.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1076bp|location=Sequence derived from alignment at S-firma_F_contig10166:1213..2288+ (Sphaerotrichia firma ET2_F female)
CCCCTTGTCTCCGTCCCACGTGAAGAACGCTTGCCACAGTGCTACTGCTC
TAGATGGACGACCTGCAACGTTCCAATCAGAAAACTGCGGGCATCTTTTC
CTTTTCTCTCGCAGCGATCAACCGATCCATTCTTATTTTTGCCTCTTGCG
CATGACGCAAAACCTGTGCAACAGAGCGCCCCTGCCCCACGCTCCTCGCT
CTCGCCCTCTGCACTATCCGCTACCCGTCCTGACGCATTCGCTCATTCTA
CTGTCCACTCACCGCCCAAAAAACGCCAACCTACACTATGGCGAATCGCC
GCCAGTACACACAAATTCGGGGCTGTGAGTGCTGCAAGTGGTGATGCAAA
TGGTAAGGTTTTGAAGGCCTACCGGGTGCCCGCTCTTACGGTAGTAGTGC
CGCCAACAAGCAACCGCAATTTTCGTTTTGCCATACACCCGATCTTACGC
ACGCACTACTTAAGAGCAGCTCCTTCGGCACCCATCAAGCACCTGAGAGA
ACCATGCACGTATCATATGAAGGCCTGCTTGACTCAGAAAGGAACGCACG
AGTCTCCAAGAAGAAAGAATATCGCAAACACCCCGAACCACCAGCTCGCC
GCGAAACCGAAGCGCTCTTGCAATTGCAAGTAAGAAGGAGACCAGAGAGC
AGTGCCCATGGGGCGAATTTTTCACAGGACGGACATACACGGCTGACGTA
TGTAGAAAATATATTTAAAAAAGAATGCGGCCCGCCGGCTGCACCACAGG
ACCGCCCTCGCCACGCGATACAAACAACGGTGCGCGACTCGGCGGACCAC
TCACTCGTCGCTGCGGTTGAGACTCGAACAAGTCGAGACTAAACAATCTC
AACCTCAACCTCGGTGTCTAGGAGGCCGGCCGGCGCCTGATTTGCCGGAG
GGGAGCATCTACCGGGGCAGTCATTCCCATCTCCCGTCCGTCGCTCTTTA
CTGCCCGGCTTTCTACCTGCCTACCATTGCGATGCGGATGCGAGGATAGA
CGGCACTTAACGAGGGTACCCAAAAGCTCCAAACATTCATACATGCATTT
TCACGCCATTGTAACCCACTAACGCC
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Coding sequence (CDS) from alignment at S-firma_F_contig10166:1213..2288+

>mRNA_S-firma_F_contig10166.275.1 ID=mRNA_S-firma_F_contig10166.275.1|Name=mRNA_S-firma_F_contig10166.275.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1266bp|location=Sequence derived from alignment at S-firma_F_contig10166:1213..2288+ (Sphaerotrichia firma ET2_F female)
CCCCTTGTCTCCGTCCCACGTGAAGAACGCTTGCCACAGTGCTACTGCTC
TAGATGGACGACCTGCAACGTTCCAATCAGAAAACTGCGGGCATCTTTTC
CTTTTCTCTCGCAGCGATCAACCGATCCATTCTTATTTTTGCCTCTTGCG
CATGACGCAAAACCTGTGCAACAGAGCGCCCCTGCCCCACGCTCCTCGCT
CTCGCCCTCTGCACTATCCGCTACCCGTCCTGACGCATTCGCTCATTCTA
CTGTCCACTCACCGCCCAAAAAACGCCAACCTACACTATGGCGAATCGCC
GCCAGTACACACAAATTCGGGGCTGTGAGTGCTGCAAGTGGTGATGCAAA
TGGTAAGGTTTTGAAGGCCTACCGGGTGCCCGCTCTTACGGTAGTAGTGC
CGCCAACAAGCAACCGCAATTTTCGTTTTGCCATACACCCGATCTTACGC
ACGCACTACTTAAGAGCAGCTCCTTCGGCACCCATCAAGCACCTGAGAGA
ACCATGCACGTATCATATGAAGGCCTGCTTGACTCAGAAAGGAACGCACG
AGTCTCCAAGAAGAAAGAATATCGCAAACACCCCGAACCACCAGCTCGCC
GCGAAACCGAAGCGCTCTTGCAATTGCAAGTAACCCCTTGTCTCCGTCCC
ACGTGAAGAACGCTTGCCACAGTGCTACTGCTCTAGATGGACGACCTGCA
ACGTTCCAATCAGAAAACTGCGGGCATCTTTTCCTTTTCTCTCGCAGCGA
TCAACCGATCCATTCTTATTTTTGCCTCTTGCGCATGACGCAAAACCTGT
GCAACAGAGCGCCCCTGCCCCACGCTCCTCGCTCTCGCCCTCTGCACTAT
CCGCTACCCGTCCTGACGCATTCGCTCATTCTACTGTCCACTCACCGCCC
AAAAAACGCCAACCTACACTATGGCGAATCGCCGCCAGTACACACAAATT
CGGGGCTGTGAGTGCTGCAAGTGGTGATGCAAATGGTAAGGTTTTGAAGG
CCTACCGGGTGCCCGCTCTTACGGTAGTAGTGCCGCCAACAAGCAACCGC
AATTTTCGTTTTGCCATACACCCGATCTTACGCACGCACTACTTAAGAGC
AGCTCCTTCGGCACCCATCAAGCACCTGAGAGAACCATGCACGTATCATA
TGAAGGCCTGCTTGACTCAGAAAGGAACGCACGAGTCTCCAAGAAGAAAG
AATATCGCAAACACCCCGAACCACCAGCTCGCCGCGAAACCGAAGCGCTC
TTGCAATTGCAAGTAA
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