mRNA_S-firma_F_contig1016.269.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig1016.269.1 vs. uniprot
Match: A0A6H5L0A8_9PHAE (PAP_fibrillin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0A8_9PHAE) HSP 1 Score: 349 bits (895), Expect = 4.990e-107 Identity = 205/373 (54.96%), Postives = 257/373 (68.90%), Query Frame = 2
Query: 455 ANTTQTLTRLGSILEDFDEKYFSKYLSAGSTPSYKNTLAAATSSSTLERGSGGKGTDGSASTGGGKTDETKEKTKVGVEVSAVSSADPEAAGAAKGVSSSGDAAVEMGDKAKEKAEGVAAAASKNLAGSASGTVQLDRPKQVQGVFDDIQAKAVQYYKTSPATAXXXXXXXXXXXXXXXXXXXXXGGIATPLPEAVQILEAKLESYLTESRFRPRKLKKEKKSGLVDTISAMEASYPADANPLGDPALSGQWSVVYSSSSKLMGRALRGVLAGLFKTSDARQVVDAGASSVMNACRARLRMTPLALRVAKKGSYRAIGDRKVFVDMPATKKGVLRRLLPKFRAGKVEAEVTYLSNKWRICRANGVTVAFRKSG 1573
ANT ++L +LG+++E+ DE+YFSKY++ G+TP+YK+TLAAA +++ SG GT G + + GGK D+ E+ + +++ +S+D A + AA A + +SGTV+LDRPK+VQGVFDD+Q KAV +YKTS GG P+ EA + LE KLES L+ES F+PRKLKK+KKS LVD I AME SYPA ANPL DPALSGQWSVVYSSSS+L+GR ++G+ +G FKTSD RQVVD GASSV+NACRARLR+TPLALRVAKKGSYR +RKV V+MP TKKG+LRR+LP RAGKVEAEVTYLS+KWRICRA GVT+AFRKSG
Sbjct: 107 ANTNESLLKLGTLVENIDERYFSKYVAVGATPAYKDTLAAAATTT-----SGATGT-GVSMSKGGKPDKMTEEAEG---LASTASSDASKAXXXXXXXXXXXXXXXXXXXXXXXXDAKAAVAEEG----SSGTVKLDRPKEVQGVFDDVQKKAVDFYKTSSGAMSKSQDAE--------------GGAVAPMSEAAKTLETKLESLLSESNFKPRKLKKDKKSQLVDAIKAMEESYPAGANPLADPALSGQWSVVYSSSSRLLGRVIKGLFSGFFKTSDRRQVVDTGASSVLNACRARLRLTPLALRVAKKGSYRKTAERKVLVEMPPTKKGLLRRVLPSLRAGKVEAEVTYLSDKWRICRAGGVTLAFRKSG 452
BLAST of mRNA_S-firma_F_contig1016.269.1 vs. uniprot
Match: D8LNG8_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNG8_ECTSI) HSP 1 Score: 170 bits (431), Expect = 3.670e-43 Identity = 119/265 (44.91%), Postives = 150/265 (56.60%), Query Frame = 2
Query: 455 ANTTQTLTRLGSILEDFDEKYFSKYLSAGSTPSYKNTLAAATSSSTLERGSGGKGTDGSASTGGGKTDETKEKTKVGVEVSAVSSADPEAAGAAKGVSSSGDAAVEMGDKAKEKAEGVAAAASKNLAGSASGTVQLDRPKQVQGVFDDIQAKAVQYYKTSPATAXXXXXXXXXXXXXXXXXXXXXGGIATPLPEAVQILEAKLESYLTESRFRPRKLKKEKKSGLVDTISAMEASYPADANPLGDPALSGQWSVVYSSSSKLMGR 1249
ANT ++L +LG+++E DE+YFSKY++AG+ PSYK+TLAAA A++ GGK D+ TK +++ S+D A A + +SGTV+LDRPK+VQGVFDDIQ KAV++YKTS GG A P+ EA + LE KLES L+ES F+PRKLKK+KKS LV I AME SYPADANPL DPALSGQWSVVYSSSS+ +GR
Sbjct: 74 ANTNESLLKLGTLVEKIDERYFSKYVTAGANPSYKDTLAAAAXXXXXXXXXXXXXV---AASKGGKLDKM---TKEAEGLASTVSSDVSKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEEE---GSSGTVKLDRPKEVQGVFDDIQKKAVEFYKTSSGAMSKSQDAE--------------GGAAAPMSEAAKTLETKLESLLSESNFKPRKLKKDKKSQLVAAIKAMEESYPADANPLADPALSGQWSVVYSSSSRGLGR 315
BLAST of mRNA_S-firma_F_contig1016.269.1 vs. uniprot
Match: A0A836CKA5_9STRA (PAP_fibrillin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKA5_9STRA) HSP 1 Score: 116 bits (291), Expect = 1.110e-23 Identity = 90/267 (33.71%), Postives = 125/267 (46.82%), Query Frame = 2
Query: 854 VQLDRPKQVQGVFDDIQAKAVQYYKTSPATAXXXXXXXXXXXXXXXXXXXXXGGIATPLPEAVQ------ILEAKLESYLTESRFRPRKLKKEKKSGL------------------VDTISAMEASYPADANPLGDPALSGQWSVVYSSSSKLMGRALRGVLAGLFKTSDARQVVDAGASSVMNACRARLRMTPLALRVAKKGSYR-----AIGDRKVFVDMPATKKGVLRRLLPKFRAGKVEAEVTYLSNKWRICRANGVTVAFRK 1567
+ L RP QVQ V + +Q +AV YK + A XXXX +A +PE +LE +LE L S P ++ ++ ++ L V T+ A+EAS P A+PL P L+G W++VYSSS + AL + FK S Q VDA A +V+N+ RLR+TPL LR + G++ V+ +G R FR G VTYLS WRICR++GV +AFRK
Sbjct: 215 LDLQRPAQVQNVIESLQKRAVAMYKGAAQAASAGFVRDEDVPAVAVAAXXXX--VADAMPEIAPPRASEAMLEKRLEDLLKTSDMSPARMSEQDQAALTTLHKSTRLTTHLHATHQVTTLEALEASTPPGAHPLHSPLLTGDWALVYSSSGSVFKAALGKKRSAFFKVSSPTQSVDAAAGTVLNSALLRLRLTPLRLRARQAGTFTLDKGSGAPGATAIVNFA---RGGFGRFAKLFRRGTAAVTVTYLSTGWRICRSDGVVLAFRK 476
BLAST of mRNA_S-firma_F_contig1016.269.1 vs. uniprot
Match: D8LNG7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNG7_ECTSI) HSP 1 Score: 85.1 bits (209), Expect = 9.100e-17 Identity = 39/48 (81.25%), Postives = 44/48 (91.67%), Query Frame = 2
Query: 1430 MPATKKGVLRRLLPKFRAGKVEAEVTYLSNKWRICRANGVTVAFRKSG 1573
MP TKKG+LRR+LP RAGKVEAEVTYLS+KWR+CRA GVTVAFRK+G
Sbjct: 1 MPPTKKGLLRRVLPSLRAGKVEAEVTYLSDKWRVCRAGGVTVAFRKNG 48 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1016.269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1016.269.1 >prot_S-firma_F_contig1016.269.1 ID=prot_S-firma_F_contig1016.269.1|Name=mRNA_S-firma_F_contig1016.269.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=457bp MWWTFFIVVVVAAALSFRQPNYRCSARKLPKHPHTRHLNTHVPSHPSRLPback to top mRNA from alignment at S-firma_F_contig1016:883..6109+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig1016.269.1 ID=mRNA_S-firma_F_contig1016.269.1|Name=mRNA_S-firma_F_contig1016.269.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=5227bp|location=Sequence derived from alignment at S-firma_F_contig1016:883..6109+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig1016:883..6109+ >mRNA_S-firma_F_contig1016.269.1 ID=mRNA_S-firma_F_contig1016.269.1|Name=mRNA_S-firma_F_contig1016.269.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2742bp|location=Sequence derived from alignment at S-firma_F_contig1016:883..6109+ (Sphaerotrichia firma ET2_F female)back to top |