mRNA_S-firma_F_contig10156.265.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10156.265.1
Unique NamemRNA_S-firma_F_contig10156.265.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig10156.265.1 vs. uniprot
Match: A0A6H5JU65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU65_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 1.740e-5
Identity = 28/45 (62.22%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:   70 SGGALYFSSASNATVAGGRLTGNTASGSGGHVLATNPGTNVELLP 204
            SGGA++FS  +NATV GG  + NTA+G+GGHV+A +  TNVELLP
Sbjct:  750 SGGAVFFSLGTNATVTGGLFSSNTATGAGGHVVAADAHTNVELLP 794
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10156.265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JU65_9PHAE1.740e-562.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10156contigS-firma_F_contig10156:3686..4633 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size308
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815543.990483-CDS-S-firma_F_contig10156:3687..39221622815543.990483-CDS-S-firma_F_contig10156:3687..3922Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10156 3688..3922 -
1696949404.6294305-CDS-S-firma_F_contig10156:3687..39221696949404.6294305-CDS-S-firma_F_contig10156:3687..3922Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10156 3688..3922 -
1622815544.0031917-CDS-S-firma_F_contig10156:4562..46331622815544.0031917-CDS-S-firma_F_contig10156:4562..4633Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10156 4563..4633 -
1696949404.6377177-CDS-S-firma_F_contig10156:4562..46331696949404.6377177-CDS-S-firma_F_contig10156:4562..4633Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10156 4563..4633 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10156.265.1prot_S-firma_F_contig10156.265.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10156 3688..4633 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10156.265.1

>prot_S-firma_F_contig10156.265.1 ID=prot_S-firma_F_contig10156.265.1|Name=mRNA_S-firma_F_contig10156.265.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=102bp
VHFSGATGVLDGVVLSGNSVSAGSGGALYFSSASNATVAGGRLTGNTASG
SGGHVLATNPGTNVELLPSLPTTTTASSAGEPGAITSAEEEEAGQASAAA
AG
back to top

mRNA from alignment at S-firma_F_contig10156:3686..4633-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10156.265.1 ID=mRNA_S-firma_F_contig10156.265.1|Name=mRNA_S-firma_F_contig10156.265.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=948bp|location=Sequence derived from alignment at S-firma_F_contig10156:3686..4633- (Sphaerotrichia firma ET2_F female)
GTGCACTTCAGCGGGGCGACCGGCGTGCTGGACGGGGTCGTCCTCTCCGG
CAACTCTGTCTCCGCGGGGAGGTGTGTGCCTGTGTGTGTGTGTGAGAGAG
AGAGAGTTGTTCTTTGGGTTTTGAGGCGTGCGTGTGTGTGTGTGTGTGTG
AGAGAGAGAGAGAGAGAGAGAGAGACTCGTTTTTTGTGTTGTGAGAGTCA
AGGGGGGCGGGGAAGGGAGGGAGCGGTATAGCGGCTCCACTGCTGTGGTG
TTGTTGTTGGTGGTGTTGTTGGTGTTGATGTTGATGTAGTTTTGCTGTTG
TTGCTGTTGCTGTTGTTGTTTCGTTGGTGTTAGTGGTGGTGTTGGTGTTG
GTGTTGGGTTTTGATCCACCCACCACCGCGGGTGCTTGGCGACACCATTG
AATCGTATCTTCAAATCTTCAAATCTTCAAAGAGCAACAAAACAGCACGA
AGCGGACTCCGTATACTTCCAGTTGACCCCGAAAAAAAAAAAATTGCTTC
GTATAACTGCTGTAACCTCGCGTGTGAATCTGGCTGTTCGAGATGGTGAG
CGAATCTCTTGCTAGTTTATTCGGGTGTCCACGCCCGCCTGCGAGCGACT
GTCTCAGCAACCCAGACCAACCGACAGCACCCCCCCCCCCCCTCTGCATC
TACAACCGCCTCCTGCCCTCCCTCTCCCCCCCCTCCAACCACACACCAAC
TCCACCTTCAGCGGCGGCGCCCTCTACTTCTCGTCGGCGTCCAACGCCAC
AGTGGCGGGGGGCCGGCTGACTGGCAACACGGCCAGCGGCAGCGGCGGCC
ACGTGCTCGCGACCAACCCGGGCACCAACGTCGAGCTCCTCCCCTCCCTG
CCCACCACCACCACCGCGTCCTCCGCCGGAGAGCCCGGGGCGATAACATC
GGCAGAAGAGGAAGAAGCGGGGCAAGCATCGGCGGCGGCGGCGGGGGC
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig10156:3686..4633-

>mRNA_S-firma_F_contig10156.265.1 ID=mRNA_S-firma_F_contig10156.265.1|Name=mRNA_S-firma_F_contig10156.265.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=612bp|location=Sequence derived from alignment at S-firma_F_contig10156:3686..4633- (Sphaerotrichia firma ET2_F female)
GTGCACTTCAGCGGGGCGACCGGCGTGCTGGACGGGGTCGTCCTCTCCGG
CAACTCTGTCTCCGCGGGGAGGTGCACTTCAGCGGGGCGACCGGCGTGCT
GGACGGGGTCGTCCTCTCCGGCAACTCTGTCTCCGCGGGGAGCGGCGGCG
CCCTCTACTTCTCGTCGGCGTCCAACGCCACAGTGGCGGGGGGCCGGCTG
ACTGGCAACACGGCCAGCGGCAGCGGCGGCCACGTGCTCGCGACCAACCC
GGGCACCAACGTCGAGCTCCTCCCCTCCCTGCCCACCACCACCACCGCGT
CCTCCGCCGGAGAGCCCGGGGCGATAACATCGGCAGAAGAGGAAGAAGCG
GGGCAAGCATCGGCGGCGGCGGCGGGGCGGCGGCGCCCTCTACTTCTCGT
CGGCGTCCAACGCCACAGTGGCGGGGGGCCGGCTGACTGGCAACACGGCC
AGCGGCAGCGGCGGCCACGTGCTCGCGACCAACCCGGGCACCAACGTCGA
GCTCCTCCCCTCCCTGCCCACCACCACCACCGCGTCCTCCGCCGGAGAGC
CCGGGGCGATAACATCGGCAGAAGAGGAAGAAGCGGGGCAAGCATCGGCG
GCGGCGGCGGGG
back to top