mRNA_S-firma_F_contig10154.261.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10154.261.1
Unique NamemRNA_S-firma_F_contig10154.261.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10154.261.1 vs. uniprot
Match: A0A7S1CJR5_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CJR5_9STRA)

HSP 1 Score: 185 bits (469), Expect = 2.580e-55
Identity = 96/206 (46.60%), Postives = 132/206 (64.08%), Query Frame = 1
Query:    1 LTPELAPATIACIADSFHYKAADA--DPFSSILNLHKHHWEKMASMFVERSAADPRHLSVVALNEDTGRIDGAMINEDWKEPQPTAYKELNSDSWRPVRAVFNELHTRYRASSSLIIRNDILHSLYFTCVHPGARNEGIMKGMWEITLQNAKDYNYNALVAEASRHSVRDIFDNKLGLLEVARVDFDDFKFEGQTVFKELPEENPE 612
            LTP+L      CIA +F   +  +  DPFS + NL KHHW  MA MFVER+A +   +S+V LN++TG +DG M+NEDWK   P AY++L+SD WRPVRA FN+LHTR+++    I+  ++ H+L FTC  P A+  GI + +W  +++ A+++N+   VAEAS  S R   D  LG  EVA V F D+ FEGQ V  E  EE P+
Sbjct:   23 LTPDLVKPATECIATTFAVSSTGSSPDPFSWLFNLRKHHWRSMAGMFVERAAHES--ISLVCLNDETGDVDGVMLNEDWKLHAPPAYRQLSSD-WRPVRAAFNDLHTRFKSRGPHIMDGEVFHALIFTCTRPEAQGSGINRELWRRSMETAQNHNFKEFVAEASTASTRRALD-ALGFREVASVPFADWLFEGQEVLSEAAEEKPD 224          
BLAST of mRNA_S-firma_F_contig10154.261.1 vs. uniprot
Match: A0A5A8EEW1_CAFRO (N-acetyltransferase domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EEW1_CAFRO)

HSP 1 Score: 172 bits (436), Expect = 1.780e-50
Identity = 91/204 (44.61%), Postives = 126/204 (61.76%), Query Frame = 1
Query:    1 LTPELAPATIACIADSFHYKAADADPFSSILNLHKHHWEKMASMFVERSAADPRHLSVVALNEDTGRIDGAMINEDWKEPQPTAYKELNSDSWRPVRAVFNELHTRYRASSSL-IIRNDILHSLYFTCVHPGARNEGIMKGMWEITLQNAKDYNYNALVAEASRHSVRDIFDNKLGLLEVARVDFDDFKFEGQTVFKELPEENP 609
            LTPE APA   C+A+SF +  +  DPF++   L +H W +MA  FV+R+A       VV +NED   +D  M+NED++   P  Y+ L ++ WRPVRA F ELHTR++A+ S  +   +ILH LYFTCV P  R +G+MK +W+ T   A+DY Y  LVAEA    VR + +  LG  EVA V++ D++FEG T  + L   NP
Sbjct:   12 LTPENAPAAARCVAESFAHPQS-RDPFTTQFKLQRHQWFRMAYPFVQRAADATNPKGVVVMNEDGETVDAVMVNEDFRMAPPPEYRLLPAE-WRPVRACFRELHTRFKANYSRPVAEGEILHCLYFTCVRPEVRGQGLMKALWDETQVVARDYGYKHLVAEAPTREVRSVLEESLGFKEVAAVEYADWRFEGATPTEALALANP 213          
BLAST of mRNA_S-firma_F_contig10154.261.1 vs. uniprot
Match: A0A7S4IIT0_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IIT0_9EUKA)

HSP 1 Score: 163 bits (413), Expect = 4.140e-47
Identity = 87/211 (41.23%), Postives = 132/211 (62.56%), Query Frame = 1
Query:    1 LTPELAPATIACIADSFHYKAADADPFSSILNLHKHHWEKMASMFVERSAADPRHLSVVALNEDTGRIDGAMINEDWKEPQPTAYKELNSDSWRPVRAVFNELHTRYRASSSLIIR-NDILHSLYFTCVHPGARNEGIMKGMWEITLQNAKDYNYNALVAEASRHSVRDIFDNKLGLLEVARVDFDDFKFEGQTVFKELPEENPEFTALCV 630
            LTP      + CIA+SF       DPFS +  L    W  M+ MFVER+A   + LSV+A+N   G ++G M+NEDWKE +P  Y +L S+ WRP+RA+FN+LH  Y+A  S  I+ ++ILH LYF+C+ P  R +G++  ++  +L+ A DY+++ +V E+S  S   I   +LG  E+A+V++  F ++G+TVF  LP  NPE+  L +
Sbjct:   11 LTPAYVGRAVDCIANSF-----SDDPFSKVSGLQAGDWAAMSGMFVERAAT--KDLSVIAVNTTNGNVEGVMLNEDWKEKKPEEYSKL-SEKWRPIRAIFNKLHISYKARHSRYIQPHEILHPLYFSCIRPELRRQGLIGQLFNKSLEIASDYHFDTVVCESSTTSTA-IACGQLGFREIAQVEYRTFLYKGETVFYPLPGMNPEYQKLTI 212          
BLAST of mRNA_S-firma_F_contig10154.261.1 vs. uniprot
Match: A0A2P6NBN9_9EUKA (N-acetyltransferase domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NBN9_9EUKA)

HSP 1 Score: 141 bits (356), Expect = 3.480e-38
Identity = 78/189 (41.27%), Postives = 112/189 (59.26%), Query Frame = 1
Query:   28 IACIADSFHYKAADADPFSSILNLHKHHWEKMASMFVERSAADPRHLSVVALNEDTGRIDGAMINEDWKEPQPTAYKELNSDSWRPVRAVFNELHTRYRASSSLIIRNDILHSLYFTCVHPGARNEGIMKGMWEITLQNAKDYNYNALVAEASRHSVRDIFDNKLGLLEVARVDFDDFKFEGQTVFKEL 594
            + CI+ SF   +   DPF+  L L    W  M+ MFV+R+A   + +S++A + D   + G +INEDWKE  P+ Y +L    WRPVRA+FN+LH R++A+   I    + H LYFTCV P  RN GI   +W  +L  A++ NY  +V EAS  S   +   KLG  EVA +D+ +F F+G+ VF +L
Sbjct:   52 VECISRSF---SKSNDPFTRALKLTPTQWGVMSQMFVQRAAH--QDMSLIAYDPDVDEVKGVIINEDWKETPPSDYHQLMD--WRPVRAMFNDLHIRFKATQPRIEAGRLFHPLYFTCVRPETRNSGIATELWLRSLDIARERNYTDIVCEASAASSVSLC-KKLGFREVAGIDYQNFMFDGKFVFADL 232          
BLAST of mRNA_S-firma_F_contig10154.261.1 vs. uniprot
Match: Q54VC5_DICDI (Uncharacterized protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54VC5_DICDI)

HSP 1 Score: 139 bits (350), Expect = 1.340e-37
Identity = 72/211 (34.12%), Postives = 126/211 (59.72%), Query Frame = 1
Query:    1 LTPELAPATIACIADSFHYKAADADPFSSILNLHKHHWEKMASMFVERSAADPRHLSVVALNEDTGRIDGAMINEDWKEPQPTAYKELNSDSWRPVRAVFNELHTRYRASSSLIIR-NDILHSLYFTCVHPGARNEGIMKGMWEITLQNAKDYNYNALVAEASRHSVRDIFDNKLGLLEVARVDFDDFKFEGQTVFKELPEENPEFTALCV 630
            LTP + P  +  I  SF       DPFS  LNL+K++W +MA++FV+R+A   + LS+VA++ +T +I G +INEDWK  +P  +       W PV+++F+ LH +Y+      IR  +I+HSLYFTCV P +R +G+   MW  +    + +N+  + AE +  S + + ++ +G    + + ++ F+++G+ +F++LP+ N  F  L +
Sbjct:   14 LTPNMVPKVVDSITKSFA-----TDPFSIALNLNKNNWTEMATLFVDRAAK--KDLSLVAIDNETDQIVGCIINEDWKTREPEEFHTSLDKKWEPVKSMFSNLHHKYKKEHPNTIRFGEIIHSLYFTCVVPSSRGQGVAYDMWYHSTDIGRAHNFQYMCAETATVSGQKLCEH-IGFTPKSSIPYNKFEYQGERIFQKLPQINTNFEKLTI 216          
BLAST of mRNA_S-firma_F_contig10154.261.1 vs. uniprot
Match: A0A257MXG7_9GAMM (N-acetyltransferase domain-containing protein n=1 Tax=Methylococcaceae bacterium NSM2-1 TaxID=1917482 RepID=A0A257MXG7_9GAMM)

HSP 1 Score: 62.8 bits (151), Expect = 2.140e-8
Identity = 40/147 (27.21%), Postives = 75/147 (51.02%), Query Frame = 1
Query:  154 DPRHLSVVALNEDTGRIDGAMINEDWKEPQPTAYKELNSDSWRPVRAVFNELHTRYRASSSLIIRNDILHSLYFTCVHPGARNEGIMKGMWEITLQNAKDYNYNALVAEASRHSVRDIFDNKLGLLEVARVDFDDFKFEGQTVFKEL 594
            +   L+V+A N+DT +I GAM+ +D+    P   + L  D++ P+ AV +EL T+Y+    ++ + + LH L+   V      + + K + +  L+N     Y   + EA+    + IF  K G ++     +  F F+G+ VF+ +
Sbjct:   85 EQEELTVIARNQDTNQIIGAMVTDDFAIEPPEEMRHLG-DNFEPLWAVLDELDTQYK-QGRILPKGEYLH-LFLLAVDHRQSGKNVAKNLVQTCLENGIRNGYKTGIVEATGVVSQHIF-RKFGFVDRFEAPYKTFTFQGKPVFESI 227          
BLAST of mRNA_S-firma_F_contig10154.261.1 vs. uniprot
Match: A0A257N7Z7_9GAMM (Uncharacterized protein n=1 Tax=Methylococcaceae bacterium NSM2-1 TaxID=1917482 RepID=A0A257N7Z7_9GAMM)

HSP 1 Score: 62.4 bits (150), Expect = 2.170e-8
Identity = 42/152 (27.63%), Postives = 77/152 (50.66%), Query Frame = 1
Query:  151 ADPRHLSVVALNEDTGRIDGAMINEDWKEPQPTAYKELNSDSWRPVRAVFNELHTRYRASSSLIIRNDILHSLYFTCVHPGARNEGIMKGMWEITLQNAKDYNYNALVAEA----SRHSVRDIFDNKLGLLEVARVDFDDFKFEGQTVFKEL 594
            A+   L+V+A N+DT +I GAM+ +D+    P   + L  D++ PV A+ ++L ++Y+    ++ + + LH L     H     + + K + +  L+N     Y   VAEA    S+H  R     K G ++   + +  F F+G+ VF+ +
Sbjct:   58 AEQEELTVIARNQDTNQIIGAMVADDFALEPPEEIRHLG-DNFGPVWAILDDLDSQYK-QGRILPKGEYLHLLLLAVDHRQT-GKNVAKNLLKTCLENGAGKGYRTGVAEATGLVSQHICR-----KFGFVDRFEIPYKTFTFQGKRVFESI 201          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10154.261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A7S1CJR5_9STRA2.580e-5546.60Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A5A8EEW1_CAFRO1.780e-5044.61N-acetyltransferase domain-containing protein n=1 ... [more]
A0A7S4IIT0_9EUKA4.140e-4741.23Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A2P6NBN9_9EUKA3.480e-3841.27N-acetyltransferase domain-containing protein n=1 ... [more]
Q54VC5_DICDI1.340e-3734.12Uncharacterized protein n=1 Tax=Dictyostelium disc... [more]
A0A257MXG7_9GAMM2.140e-827.21N-acetyltransferase domain-containing protein n=1 ... [more]
A0A257N7Z7_9GAMM2.170e-827.63Uncharacterized protein n=1 Tax=Methylococcaceae b... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10154contigS-firma_F_contig10154:4483..5112 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog44689.DDB0205209
Max annot lvl554915|Amoebozoa
Evalue2.2e-38
EggNOG OGs2CSE5@1|root,2RBIW@2759|Eukaryota,3X9KA@554915|Amoebozoa
Hectar predicted targeting categoryother localisation
Exons1
Model size630
Cds size630
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815543.8775933-CDS-S-firma_F_contig10154:4482..51121622815543.8775933-CDS-S-firma_F_contig10154:4482..5112Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10154 4483..5112 -
1696949404.5900264-CDS-S-firma_F_contig10154:4482..51121696949404.5900264-CDS-S-firma_F_contig10154:4482..5112Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10154 4483..5112 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10154.261.1prot_S-firma_F_contig10154.261.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10154 4483..5112 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10154.261.1

>prot_S-firma_F_contig10154.261.1 ID=prot_S-firma_F_contig10154.261.1|Name=mRNA_S-firma_F_contig10154.261.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=210bp
LTPELAPATIACIADSFHYKAADADPFSSILNLHKHHWEKMASMFVERSA
ADPRHLSVVALNEDTGRIDGAMINEDWKEPQPTAYKELNSDSWRPVRAVF
NELHTRYRASSSLIIRNDILHSLYFTCVHPGARNEGIMKGMWEITLQNAK
DYNYNALVAEASRHSVRDIFDNKLGLLEVARVDFDDFKFEGQTVFKELPE
ENPEFTALCV
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mRNA from alignment at S-firma_F_contig10154:4483..5112-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10154.261.1 ID=mRNA_S-firma_F_contig10154.261.1|Name=mRNA_S-firma_F_contig10154.261.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=630bp|location=Sequence derived from alignment at S-firma_F_contig10154:4483..5112- (Sphaerotrichia firma ET2_F female)
TTGACGCCGGAGCTGGCGCCGGCCACAATCGCGTGCATCGCGGACTCGTT TCACTACAAGGCCGCGGATGCGGACCCGTTCAGCAGCATCCTGAACCTCC ACAAGCACCACTGGGAGAAGATGGCAAGCATGTTTGTGGAGCGGTCGGCG GCGGACCCCCGCCACCTCAGCGTGGTGGCGCTGAACGAGGACACTGGCCG CATTGACGGCGCCATGATCAACGAGGACTGGAAGGAGCCCCAGCCGACGG CGTACAAGGAGCTTAACTCGGACTCGTGGCGCCCCGTGCGGGCCGTTTTC AACGAGCTCCACACCAGGTACCGCGCCAGCTCTAGCCTCATTATCCGCAA CGACATCCTGCACTCCCTGTACTTCACGTGCGTGCACCCCGGAGCCCGCA ACGAGGGCATCATGAAGGGCATGTGGGAGATTACCCTCCAGAACGCCAAG GACTATAACTACAATGCCCTCGTCGCGGAGGCGTCCAGACACTCCGTCCG CGACATTTTTGACAACAAGTTAGGTTTGCTGGAGGTCGCCCGCGTGGACT TTGACGACTTTAAGTTTGAAGGCCAAACCGTGTTCAAGGAACTCCCCGAA GAGAACCCAGAGTTCACGGCGTTGTGCGTT
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Coding sequence (CDS) from alignment at S-firma_F_contig10154:4483..5112-

>mRNA_S-firma_F_contig10154.261.1 ID=mRNA_S-firma_F_contig10154.261.1|Name=mRNA_S-firma_F_contig10154.261.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1260bp|location=Sequence derived from alignment at S-firma_F_contig10154:4483..5112- (Sphaerotrichia firma ET2_F female)
TTGACGCCGGAGCTGGCGCCGGCCACAATCGCGTGCATCGCGGACTCGTT
TCACTACAAGGCCGCGGATGCGGACCCGTTCAGCAGCATCCTGAACCTCC
ACAAGCACCACTGGGAGAAGATGGCAAGCATGTTTGTGGAGCGGTCGGCG
GCGGACCCCCGCCACCTCAGCGTGGTGGCGCTGAACGAGGACACTGGCCG
CATTGACGGCGCCATGATCAACGAGGACTGGAAGGAGCCCCAGCCGACGG
CGTACAAGGAGCTTAACTCGGACTCGTGGCGCCCCGTGCGGGCCGTTTTC
AACGAGCTCCACACCAGGTACCGCGCCAGCTCTAGCCTCATTATCCGCAA
CGACATCCTGCACTCCCTGTACTTCACGTGCGTGCACCCCGGAGCCCGCA
ACGAGGGCATCATGAAGGGCATGTGGGAGATTACCCTCCAGAACGCCAAG
GACTATAACTACAATGCCCTCGTCGCGGAGGCGTCCAGACACTCCGTCCG
CGACATTTTTGACAACAAGTTAGGTTTGCTGGAGGTCGCCCGCGTGGACT
TTGACGACTTTAAGTTTGAAGGCCAAACCGTGTTCAAGGAACTCCCCGAA
GAGAACCCAGAGTTCACGGCGTTGTGCGTTTTGACGCCGGAGCTGGCGCC
GGCCACAATCGCGTGCATCGCGGACTCGTTTCACTACAAGGCCGCGGATG
CGGACCCGTTCAGCAGCATCCTGAACCTCCACAAGCACCACTGGGAGAAG
ATGGCAAGCATGTTTGTGGAGCGGTCGGCGGCGGACCCCCGCCACCTCAG
CGTGGTGGCGCTGAACGAGGACACTGGCCGCATTGACGGCGCCATGATCA
ACGAGGACTGGAAGGAGCCCCAGCCGACGGCGTACAAGGAGCTTAACTCG
GACTCGTGGCGCCCCGTGCGGGCCGTTTTCAACGAGCTCCACACCAGGTA
CCGCGCCAGCTCTAGCCTCATTATCCGCAACGACATCCTGCACTCCCTGT
ACTTCACGTGCGTGCACCCCGGAGCCCGCAACGAGGGCATCATGAAGGGC
ATGTGGGAGATTACCCTCCAGAACGCCAAGGACTATAACTACAATGCCCT
CGTCGCGGAGGCGTCCAGACACTCCGTCCGCGACATTTTTGACAACAAGT
TAGGTTTGCTGGAGGTCGCCCGCGTGGACTTTGACGACTTTAAGTTTGAA
GGCCAAACCGTGTTCAAGGAACTCCCCGAAGAGAACCCAGAGTTCACGGC
GTTGTGCGTT
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