mRNA_S-firma_F_contig10148.250.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10148.250.1 vs. uniprot
Match: A0A6H5LIJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIJ3_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 1.680e-16 Identity = 52/101 (51.49%), Postives = 65/101 (64.36%), Query Frame = 1
Query: 142 RSRCLDAFAVVLAQAFEREAGERRIGWFVSTLELQLVSLEVCRACRSVSTLLVRVDARTPRRLWAPRDDQAVQLRPKRRGWNGW--PRVPALQAYGVRWML 438
R+RCLDAF + L+QA E GE+R W+ STLELQL SL++CRACR+ S L V VD +TPR LW+ R Q RP R WN RVP ++A + W L
Sbjct: 8 RTRCLDAFVIALSQACE--GGEKR--WYASTLELQLTSLDLCRACRTTSILHVHVDDQTPRSLWSSR---TAQTRPNTRSWNLHISSRVPVVRALRLTWAL 101
BLAST of mRNA_S-firma_F_contig10148.250.1 vs. uniprot
Match: D7G0Z9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z9_ECTSI) HSP 1 Score: 83.2 bits (204), Expect = 9.430e-16 Identity = 49/113 (43.36%), Postives = 62/113 (54.87%), Query Frame = 1
Query: 55 INTKGLNQDSPCFFSLLRGSLQRTMHTGERSRCLDAFAVVLAQAFEREAGERRIGWFVSTLELQLVSLEVCRACRSVSTLLVRVDARTPRRLWAPRDDQAVQLRPKRRGWNGW 393
++ K ++ L L + RS+CLDAF V L Q + + E+R W+ STLELQLVSLE C ACR V TL VRVD RTPR LW+PR + R+ GW
Sbjct: 9 VDRKAIDVKLRLASKLTEEQLGQVKQMTRRSKCLDAFVVALNQTCDGQ--EKR--WYASTLELQLVSLEFCGACRHVPTLHVRVDRRTPRSLWSPRTTPITAHKRSRKVLEGW 117
BLAST of mRNA_S-firma_F_contig10148.250.1 vs. uniprot
Match: A0A6H5JR57_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR57_9PHAE) HSP 1 Score: 88.6 bits (218), Expect = 2.370e-15 Identity = 50/99 (50.51%), Postives = 62/99 (62.63%), Query Frame = 1
Query: 145 SRCLDAFAVVLAQAFEREAGER-RIGWFVSTLELQLVSLEVCRACRSVSTLLVRVDARTPRRLWAPRDDQAVQLRPKRRGWNGWPRVPALQAYGVRWML 438
SR LDA V L QA++ AG+ I WF STL LQL S+++CRACRSV TLLV++D TPR LW P P +G RVP L+A+GVRW +
Sbjct: 15 SRFLDALTVALNQAYDSRAGDGDNIRWFTSTLNLQLASVDLCRACRSVPTLLVKIDHDTPRSLWTPTVYAGAYSAP-----SG--RVPPLRAHGVRWEI 106
BLAST of mRNA_S-firma_F_contig10148.250.1 vs. uniprot
Match: A0A6H5KNI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE) HSP 1 Score: 85.9 bits (211), Expect = 1.990e-14 Identity = 54/111 (48.65%), Postives = 64/111 (57.66%), Query Frame = 1
Query: 127 MHTGERSRCLDAFAVVLAQAFEREAGERRIGWFVSTLELQLVSLEVCRACRSVSTLLVRVDARTPRRLWAPRDDQAVQLRPKRRGWNGWP------RVPALQAYGVRWMLP 441
M T S+CLDAF V L QA + + E+R W+VSTLELQLVSLEVC ACR V TL VRV +TP LW P + N P RVP +QA+G+ W LP
Sbjct: 1 MTTKGNSKCLDAFVVALNQACDGQ--EKR--WYVSTLELQLVSLEVCGACRRVQTLHVRVKPQTPPSLWFPSQNHTTTN-------NRSPKVCISSRVPVVQAFGLTWALP 100
BLAST of mRNA_S-firma_F_contig10148.250.1 vs. uniprot
Match: A0A6H5KLV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV1_9PHAE) HSP 1 Score: 83.2 bits (204), Expect = 6.940e-14 Identity = 51/99 (51.52%), Postives = 59/99 (59.60%), Query Frame = 1
Query: 142 RSRCLDAFAVVLAQAFEREAGERRIGWFVSTLELQLVSLEVCRACRSVSTLLVRVDARTPRRLWAPRDDQAVQLRPKRRGWNGWPRVPALQAYGVRWML 438
RS CL AF V L Q + E+R W+ STLELQLVSLE C ACR V TL VRVD +TPR LW+P A + R RVPA+QA G+ W L
Sbjct: 14 RSECLRAFIVALNQTCNGQ--EKR--WYASTLELQLVSLEFCGACRRVPTLHVRVDRQTPRSLWSPCKSHATTKKRSREACVS-NRVPAVQASGLTWAL 107
BLAST of mRNA_S-firma_F_contig10148.250.1 vs. uniprot
Match: A0A6H5K8K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K9_9PHAE) HSP 1 Score: 82.0 bits (201), Expect = 3.050e-13 Identity = 53/121 (43.80%), Postives = 67/121 (55.37%), Query Frame = 1
Query: 142 RSRCLDAFAVVLAQAFEREAGERRIGWFVSTLELQLVSLEVCRACRSVSTLLVRVDARTPRRLWAPRDDQAVQLRPKRRGWNGWPRVPALQAYGVRWMLPG--VVPTPGTPARELSRGSAP 498
RS CLDAF V L QA + A W+VSTLELQLVSLE C ACRS + V++ +TP LW+PR L+ + R RVPA+QA G W LP ++P T ++S P
Sbjct: 26 RSECLDAFIVALKQAGDGRAKR----WYVSTLELQLVSLEFCGACRSALSFDVQIHRQTPHSLWSPRKSHGT-LKKRSREACIPSRVPAVQANGWMWALPMEILLPRSATELHQVSENRQP 141
BLAST of mRNA_S-firma_F_contig10148.250.1 vs. uniprot
Match: D7G7F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F9_ECTSI) HSP 1 Score: 72.8 bits (177), Expect = 1.080e-11 Identity = 46/102 (45.10%), Postives = 59/102 (57.84%), Query Frame = 1
Query: 127 MHTGERSRCLDAFAVVLAQAFEREAGERRIGWFVSTLELQLVSLEVCRACRSVSTLLVRVDARTPRRLWAPRDDQAVQLRPKRRGWNGWPRVPALQAYGVRW 432
M T +R DAFA+ L+QA E GE+R W+ ST ELQL SL++CRACRS TL VRV TP LW+P QA+ + RVP ++A + W
Sbjct: 1 MPTEGYTRSFDAFAIALSQACE--GGEKR--WYTSTTELQLGSLDICRACRSTPTLHVRVTGGTPTSLWSPPTVQALPNTQSSKV-RVVSRVPVVRALRLTW 97
BLAST of mRNA_S-firma_F_contig10148.250.1 vs. uniprot
Match: A0A6H5JA08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA08_9PHAE) HSP 1 Score: 73.6 bits (179), Expect = 1.360e-10 Identity = 49/120 (40.83%), Postives = 59/120 (49.17%), Query Frame = 1
Query: 88 CFFSLLRGSLQRTMHTGERSRCLDAFAVVLAQAFEREAGERRIGWFVSTLELQLVSLEVCRACRSVSTLLVRVDARTPRRLWAPRDDQAVQLRPKRRGWNGWPRVPALQAYGVRWMLPGV 447
C R + TG SRCLDA + L QA GE W+ ST++LQL SLE+C ACRS+ L + V TP RLW KRR RVP ++A V W LPGV
Sbjct: 23 CIMVSTRSGRHTNVETGP-SRCLDALIIALNQA---SGGE----WYTSTMQLQLTSLELCAACRSMHLLKLNVQHGTPPRLWRGTATTRETRSVKRRNVT---RVPVVRARTVTWKLPGV 131
BLAST of mRNA_S-firma_F_contig10148.250.1 vs. uniprot
Match: A0A6H5JHB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHB0_9PHAE) HSP 1 Score: 72.4 bits (176), Expect = 4.620e-10 Identity = 40/74 (54.05%), Postives = 49/74 (66.22%), Query Frame = 1
Query: 118 QRTMHTGERSRCLDAFAVVLAQAFEREAGERRIGWFVSTLELQLVSLEVCRACRSVSTLLVRVDARTPRRLWAP 339
+R+ H G SRCLDAFA+ L QA+ G RR W+ STL+LQ V L +C ACRSV T VR+D +TP LW P
Sbjct: 133 KRSPHPGG-SRCLDAFAITLHQAY----GGRRGHWYKSTLQLQCVCLALCSACRSVPTWHVRIDDQTPHSLWDP 201
BLAST of mRNA_S-firma_F_contig10148.250.1 vs. uniprot
Match: D7G3G0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3G0_ECTSI) HSP 1 Score: 62.0 bits (149), Expect = 8.210e-9 Identity = 35/67 (52.24%), Postives = 42/67 (62.69%), Query Frame = 1
Query: 127 MHTGERSRCLDAFAVVLAQAFEREAGERRIGWFVSTLELQLVSLEVCRACRSVSTLLVRVDARTPRR 327
M+ R +CLDAF V L Q + R W+ STLELQLVSL+ C ACR TL VRVD +TPR+
Sbjct: 1 MNLEGRRKCLDAFIVALNQTCDG----RENRWYASTLELQLVSLKFCGACRRFPTLHVRVDRQTPRK 63 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10148.250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10148.250.1 >prot_S-firma_F_contig10148.250.1 ID=prot_S-firma_F_contig10148.250.1|Name=mRNA_S-firma_F_contig10148.250.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=390bp SHPDRSIDYVERRCWRSKINTKGLNQDSPCFFSLLRGSLQRTMHTGERSRback to top mRNA from alignment at S-firma_F_contig10148:852..2566+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10148.250.1 ID=mRNA_S-firma_F_contig10148.250.1|Name=mRNA_S-firma_F_contig10148.250.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1715bp|location=Sequence derived from alignment at S-firma_F_contig10148:852..2566+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10148:852..2566+ >mRNA_S-firma_F_contig10148.250.1 ID=mRNA_S-firma_F_contig10148.250.1|Name=mRNA_S-firma_F_contig10148.250.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2340bp|location=Sequence derived from alignment at S-firma_F_contig10148:852..2566+ (Sphaerotrichia firma ET2_F female)back to top |