mRNA_S-firma_F_contig10147.248.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10147.248.1
Unique NamemRNA_S-firma_F_contig10147.248.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10147.248.1 vs. uniprot
Match: A0A7S1C6P5_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C6P5_9STRA)

HSP 1 Score: 197 bits (500), Expect = 2.550e-55
Identity = 109/251 (43.43%), Postives = 164/251 (65.34%), Query Frame = 2
Query:  326 GTRSLLQHLAFKDESRQISEILRRKLDTDVYREVSGTAHGAALIEALVAQCADTFQDLETFRQVTRNAERLFPADLDIADAGAIAKLYKSLKRDNEKQKLAAEVELKVRAIYFDRIRVELVPDMVKSIYQHVTVLEDVKFMLFFARELFPDTPEEVSGELMLRNIHALRKRRAEERAAATAMLAKALGGLYPDREPPELQELSERMAKALKGAVGDLKALASDAAEYFPAEFTSARPRRILLAFSKAKAEK 1078
            GT  L+  L+ +DE R + + L ++L  +VYRE   +  G A I+A+V      F D    R + RNAERLFP     ADA AI + ++ LKR+NE +KLAAEVELK+RAIYF+ I+ E V  +V +IY+ +T LED+KF+L +A +LFP TPEE++ E +  N+ ALR++  EER AA   +  A+  +Y D+EP +++ ++E++ +  +  V DLK LA+DA E+FPAE T+ RP ++   + +A+ EK
Sbjct:  202 GTVGLMTTLSHRDERRSLKQRLTKRLVHEVYREAGDSDEGRAAIDAVVRAVFIEFTDFGELRSLIRNAERLFPEHPSDADAAAIRRTFRQLKRENEMKKLAAEVELKLRAIYFNMIKPETVEGVVHAIYRVITRLEDIKFLLHYATKLFPPTPEELTAEGLFDNLQALRRKLKEERDAAVTGVFNAMRAMYADQEPAKVRGVAEQVCRLFR-RVEDLKQLAADAPEFFPAELTALRPAKVHARYVRAQEEK 451          
BLAST of mRNA_S-firma_F_contig10147.248.1 vs. uniprot
Match: A0A2R5GQ24_9STRA (Leucine-rich repeat protein lrrA n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GQ24_9STRA)

HSP 1 Score: 165 bits (418), Expect = 5.340e-43
Identity = 95/245 (38.78%), Postives = 154/245 (62.86%), Query Frame = 2
Query:  329 TRSLLQHLAFKDESRQISEILRRKLDTDVYREVSGTAHGAALIEALVAQCADTFQDLETFRQVTRNAERLFPADLDIADAGAIAKLYKSLKRDNEKQKLAAEVELKVRAIYFDRIRVELVPDMVKSIYQHVTVLEDVKFMLFFARELFPDTPEEVSGELMLRNIHALRKRRAEERAAATAMLAKALGGLYPDREPPELQELSERMAKALKGAVGDLKALASDAAEYFPAEFT--SARPRRILLAF 1057
            TR L  +L  + E +++   LR KL + +YR++S T  G   + AL+ + +  F + ETF  V RN +RLFP  +  AD   I +   SLKR NE++KLAA++EL++RA+YFDRI   LV  +V S+Y  ++ L DV+F++  A +LFP+  ++++   + +N+ AL++R A ERA A   + +A+  LY   +PP +++ +E +    +  V +LK LA+DA++YFP EF   + RPR++ LAF
Sbjct:  255 TRGLKSYLLRRQEIKELKGKLREKLCSGLYRDLSETEAGRVKVVALIKEVSKVFPEPETFADVIRNCDRLFPDRIARADVRKIRQEIDSLKRQNERKKLAAKLELRLRALYFDRINPALVEGIVHSLYAEISELADVQFLIRHAAQLFPERADQINAVKVFQNLRALQERLALERAEAVEGVLRAMVNLYSHVDPPVVRKAAEAVCAPFR-KVEELKKLAADASQYFPTEFEQCATRPRQVRLAF 498          
BLAST of mRNA_S-firma_F_contig10147.248.1 vs. uniprot
Match: W4FNV6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FNV6_9STRA)

HSP 1 Score: 150 bits (378), Expect = 4.010e-38
Identity = 98/249 (39.36%), Postives = 142/249 (57.03%), Query Frame = 2
Query:  341 LQHLAFKDESRQISEILRRKLDTDVYREVSGTAHGAALIEALVAQCADTFQDLETFRQVTRNAERLFPADL----DIADAGAIAKLYKSLKRDNEKQKLAAEVELKVRAIYFDRIRVELVPDMVKSIYQHVTVLEDVKFMLFFARELFPDTPEEVSGELMLRNIHALRKRRAEERAAATAMLAKALGGLYPDREPPELQELSERMAKALKGAVGDLKALASDAAEYFPAEFTSARPRRILLAFSKAKAE 1075
            L +L  KD  R+  + L  KL    Y E + +  G A+I++++ +    FQ  E  + + RN ERLFP  L    D   A ++   +  LKRDNEK+KLAAE+ELK+R IYFDRI    V  MV SIY  +  L D+KF++  A  LFP T + V+G  + + +  L++  A ERAAA   + +A+  +Y D EP +++ L  ++A   K  V DLKALA+DA  +FP EF +A    I  +F +  AE
Sbjct:  140 LAYLHRKDVRRRQKQELYDKLKDGPYLESADSNEGQAMIQSVMKRVLKEFQTEEDVKSLIRNVERLFPPSLTKAQDPTTATSVRAAFTELKRDNEKKKLAAELELKIRNIYFDRIDPSSVEPMVSSIYLEIKALNDIKFLIRHATALFPPTADLVNGSDLRKKLVGLQEDMARERAAAIEKVLQAVTTIYSDAEPDKVKALVAQVAPLFKN-VKDLKALAADAGLHFPNEFLNASAPDIRASFVRKAAE 387          
BLAST of mRNA_S-firma_F_contig10147.248.1 vs. uniprot
Match: A0A485LD80_9STRA (Aste57867_19096 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LD80_9STRA)

HSP 1 Score: 148 bits (374), Expect = 1.580e-37
Identity = 94/245 (38.37%), Postives = 140/245 (57.14%), Query Frame = 2
Query:  341 LQHLAFKDESRQISEILRRKLDTDVYREVSGTAHGAALIEALVAQCADTFQDLETFRQVTRNAERLFPADLDIADAGAIAKLYKS----LKRDNEKQKLAAEVELKVRAIYFDRIRVELVPDMVKSIYQHVTVLEDVKFMLFFARELFPDTPEEVSGELMLRNIHALRKRRAEERAAATAMLAKALGGLYPDREPPELQELSERMAKALKGAVGDLKALASDAAEYFPAEFTSARPRRILLAFSK 1063
            + +L  KD  RQ+ + L  KL    Y E + +  G  +I+ ++ +    FQ  E  R + RN ERLFPA+L  A  G+ A   ++    LKRDNEK+KLAAE+ELK+R IYFDRI   +V  MV SIY  +  L D+KF++  A  LFP T  +V+G  +   + AL+   A ER AA   + +A+  +Y D EP +++ L  ++    K  V DLK LA+DA  +FP EF +   + +  +F++
Sbjct:  137 IAYLHRKDIRRQLKQELYDKLKDGPYLESADSNQGQEMIQHVMKRVLKEFQSEEDVRSLIRNVERLFPANLVQAQHGSTAASVRAHFLELKRDNEKKKLAAELELKIRNIYFDRIDPSIVESMVMSIYTEIKALADIKFLIRHATALFPPTAAQVNGADLREKLVALQDEMARERMAAIDKVLQAVMTIYSDVEPDKIKTLVSQVTPLFKN-VKDLKTLAADATLHFPGEFLNVAAQEVRASFTR 380          
BLAST of mRNA_S-firma_F_contig10147.248.1 vs. uniprot
Match: A0A5D6XYF5_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XYF5_9STRA)

HSP 1 Score: 149 bits (376), Expect = 2.410e-37
Identity = 96/254 (37.80%), Postives = 145/254 (57.09%), Query Frame = 2
Query:  338 LLQHLAFKDESRQISEILRRKLDTDVYREVSGTAHGAALIEALVAQCADTFQDLETFRQVTRNAERLFPAD------LDIADAGAIAKLYKSLKRDNEKQKLAAEVELKVRAIYFDRIRVELVPDMVKSIYQHVTVLEDVKFMLFFARELFPDTPEEVSGELMLRNIHALRKRRAEERAAATAMLAKALGGLYPDREPPELQELSERMAKALKGAVGDLKALASDAAEYFPAEFTSARPRRILLAFSKAKAEKM 1081
            +L+ L  KDE  ++   L  KL  DVYR     +     + A++      F   +  R + RNAERLFP+       +   D  A+ + Y++L+ +NE++K AA++E+K+R +YFDRI    V  MV SIY+HV  L DVKF+L  A  LFP   ++V G  +   + AL++  A ERAAA   L  A+  +Y D EP +LQ+L +R+A   K +  +L++LA+DA+  FP EF +  P  I  AF +AKA+ +
Sbjct:  184 ILRKLRRKDERTRLKRQLFEKLRDDVYRLERLDSASVTALRAMLQHVLKRFPLADELRGLVRNAERLFPSPPFALTAVQGVDVSALRRAYEALRDENERKKRAADLEIKIRNLYFDRIDPASVERMVLSIYEHVRELPDVKFLLRHAAALFPAHAKDVDGREIQLKLVALQQEIARERAAAVDQLFAAVKVVYSDTEPDQLQKLVDRVAALFK-STKELRSLAADASTLFPVEFLNVSPSEIHGAFQRAKAQAL 436          
BLAST of mRNA_S-firma_F_contig10147.248.1 vs. uniprot
Match: A0A6A5ABT3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ABT3_9STRA)

HSP 1 Score: 142 bits (358), Expect = 6.910e-37
Identity = 90/224 (40.18%), Postives = 130/224 (58.04%), Query Frame = 2
Query:  416 YREVSGTAHGAALIEALVAQCADTFQDLETFRQVTRNAERLFPADL----DIADAGAIAKLYKSLKRDNEKQKLAAEVELKVRAIYFDRIRVELVPDMVKSIYQHVTVLEDVKFMLFFARELFPDTPEEVSGELMLRNIHALRKRRAEERAAATAMLAKALGGLYPDREPPELQELSERMAKALKGAVGDLKALASDAAEYFPAEFTSARPRRILLAFSKAKAE 1075
            Y E + +  G A+I++++ +    FQ  E  + + RN ERLFP  L    D   A ++   +  LKRDNEK+KLAAE+ELK+R IYFDRI    V  MV SIY  +  L D+KF++  A  LFP T + V+G  + + +  L+   A ERAAA   + +A+  +Y D EP +++ L  ++A   K  V DLKALA+DA  +FP EF +A    I  +F +  AE
Sbjct:    2 YLESADSNEGQAMIQSVMKRVLKEFQTEEDVKSLIRNVERLFPPSLTKAQDPTTATSVRTAFTELKRDNEKKKLAAELELKIRNIYFDRIDPSSVEPMVSSIYLEIKALNDIKFLIRHATALFPPTADLVNGSDLRKKLVGLQDDMARERAAAIEKVLQAVTTIYSDAEPDKVKALVAQVAPLFKN-VKDLKALAADAGLHFPNEFLNASAPDIRASFVRKAAE 224          
BLAST of mRNA_S-firma_F_contig10147.248.1 vs. uniprot
Match: A0A6G0XC80_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XC80_9STRA)

HSP 1 Score: 150 bits (380), Expect = 9.800e-37
Identity = 94/255 (36.86%), Postives = 143/255 (56.08%), Query Frame = 2
Query:  308 DTLCSGGTRSLLQHLAFKDESRQISEILRRKLDTDVYREVSGTAHGAALIEALVAQCADTFQDLETFRQVTRNAERLFPADL-----DIADAGAIAKLYKSLKRDNEKQKLAAEVELKVRAIYFDRIRVELVPDMVKSIYQHVTVLEDVKFMLFFARELFPDTPEEVSGELMLRNIHALRKRRAEERAAATAMLAKALGGLYPDREPPELQELSERMAKALKGAVGDLKALASDAAEYFPAEFTSARPRRILLAF 1057
            D +C+    + L +L  KD  R + + L  KL   +Y E + +  G  +I+ L+      F+  +  + + R+A+RLFP DL       A A A+   Y  +K +N+K+KLAA++ELK+R IYFDRI V  V  MV SIY  +  L+D+KF+L +A +LFP +  +V G  + + +  L+   A ERAAA   +  A+  +Y D EP ++  L  ++A   K  V DLK LA+DAA +FP EF +A    I  +F
Sbjct:  128 DKICA----NTLAYLRRKDVRRALKQTLLDKLKDGIYLESADSNQGVEMIQTLMKHVLKEFRTEDEVKGLIRHADRLFPRDLAKAHQPTATAAAVRASYLEIKSENDKKKLAADLELKIRNIYFDRIDVSKVEPMVASIYSEIKSLQDIKFLLRYATQLFPPSAADVDGPTLRQKLKDLQDDMARERAAAVEKVVHAVASIYSDVEPDKIHALVAQVAPLFKN-VQDLKTLAADAALHFPTEFLNASAAEIRASF 377          
BLAST of mRNA_S-firma_F_contig10147.248.1 vs. uniprot
Match: T0SH23_SAPDV (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=T0SH23_SAPDV)

HSP 1 Score: 145 bits (366), Expect = 2.760e-36
Identity = 96/238 (40.34%), Postives = 136/238 (57.14%), Query Frame = 2
Query:  335 SLLQHLAFKDESRQISEILRRKLDTDVYREVSGTAHGAALIEALVAQCADTFQDLETFRQVTRNAERLFPADLDIAD------AGAIAKLYKSLKRDNEKQKLAAEVELKVRAIYFDRIRVELVPDMVKSIYQHVTVLEDVKFMLFFARELFPDTPEEVSGELMLRNIHALRKRRAEERAAATAMLAKALGGLYPDREPPELQELSERMAKALKGAVGDLKALASDAAEYFPAEFTSA 1030
            S+L++L  KD  RQ  +IL  KL    YRE + T  G   I  L+ +    F   +  + + RN ERLFP +L  A       A A+   +  LK+DN+K+KLAAE+ELK+R IYFDRI    V  MV SIY  +  L+D+KF++ +A  LFP T  EV G  +   + AL+   A ER  A   +  A+ G+Y D EP +++ L +++    K  V DLK LA+DAA +FP+EF +A
Sbjct:  142 SVLRYLHRKDVRRQQKQILFEKLKDGPYRESADTNDGMERIHRLMKRAIKEFPTEDDVQSLIRNLERLFPPNLITASDHPSATATAMRAHFVQLKQDNQKKKLAAELELKIRNIYFDRIDPVAVEPMVLSIYTEIKSLKDIKFLIRYATSLFPPTAAEVDGAELRDRLAALQDEMARERQNAIDKVFVAVTGIYSDVEPDKIRALIDQVVPLFKN-VKDLKTLAADAALHFPSEFLNA 378          
BLAST of mRNA_S-firma_F_contig10147.248.1 vs. uniprot
Match: A0A7S2UUH4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUH4_9STRA)

HSP 1 Score: 145 bits (366), Expect = 5.110e-36
Identity = 90/257 (35.02%), Postives = 141/257 (54.86%), Query Frame = 2
Query:  329 TRSLLQHLAFKDESRQISEILRRKLDTDVYREVSGTAHGAALIEALVAQCADTFQDLETFRQVTRNAERLFPADLDIAD-----AGAIAKLYKSLKRDNEKQKLAAEVELKVRAIYFDRIRVELVPDMVKSIYQHVTVLEDVKFMLFFARELFPDTPEEVSGELMLRNIHALRKRRAEERAAATAMLAKALGGLYPDREPPELQELSERMAKAL-------KGAVGDLKALASDAAEYFPAEFTSARPRRILLAFSK 1063
            T  L+++L  KD  +     L   L+  +YRE + TA G  L+ ALV   +  F+DLE  R + RN+ERLFPADL  A         + + +  LK+ N+ +KL+A++ELK+R IY+DR+ +  V   ++ IY H+T +EDV+F++ +A  L P   E++ G  + + +  L+      R A    L ++L  +Y DREP +++EL   +AK         K    +LK L++DA   FPAEF +A P  I   F +
Sbjct:  174 TDGLMEYLRVKDARKTYKLELTDALNRGLYRETADTAEGKLLLTALVKAISLEFRDLEELRNLVRNSERLFPADLQKARYPQKAVAEVRRRFSELKKKNQMKKLSADLELKLRVIYYDRLELSEVEIYIRDIYDHMTQVEDVQFLIKYAPSLLPPNAEDIDGAEVKQAMLRLQDELTAARKAVEENLFQSLSSVYSDREPSQVRELMLGVAKLFQRERFCTKKEEEELKKLSADAPMLFPAEFQAANPEEIRKEFRR 430          
BLAST of mRNA_S-firma_F_contig10147.248.1 vs. uniprot
Match: A0A7S2BKK2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BKK2_9STRA)

HSP 1 Score: 141 bits (356), Expect = 2.900e-35
Identity = 100/282 (35.46%), Postives = 152/282 (53.90%), Query Frame = 2
Query:  299 FWTDTLCSG--GTRSLLQHLAFKDESRQISEILRRKLDTDVYREVSGTAHGAALIEALVAQCADTFQDLETFRQVTRNAERLFPADLDIAD------AGAIAKLYKSLKRDNEKQKLAAEVELKVRAIYFDRIRVELVPDMVKSIYQ-----HVTVLEDVKFMLFFARELFPDTPEEVSGELMLRNIHALRKRRAEERAAATAMLAKALGGLYPDREPPELQELSERMAK-------ALKGAVGDLKALASDAAEYFPAEFTSA--RPRRILLAFSKAKAEK 1078
            F  D   SG   T+ L+  LA KD      E + +K+ + VYRE S +  G  LI  LV+     F+DL+  R V RN +RLFP +L   +      A  I   +  L+R+NEK++L+AE+E+K+RAIY+D I  E V  ++ SIYQ         LED++FM+  A  LFP  P+ ++G L+  N+ +L+ +   ER      L  A+  LY DR   E+  L+  +AK       A K  + +++ L++DAA++FPAE+  A   P  I + F +A+  K
Sbjct:   76 FAKDNCVSGEVDTKGLMATLAEKDTRESYREQMVKKVSSGVYREKSDSEAGKHLIGLLVSAVCRQFEDLDDLRNVVRNCDRLFPPELSKVERDPERSAKKIQDRFLQLRRENEKKQLSAELEIKLRAIYYDVIAPEKVEGIIASIYQAQKGERPLKLEDIQFMIRNASLLFPTDPKSITGILIRNNVWSLQDKLTSEREDVVLKLNTAIVSLYSDRSSEEVMALARSVAKTFQISRFATKKELEEMRKLSADAAQHFPAEYLVAFQDPVSIKIRFKQAERAK 357          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10147.248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1C6P5_9STRA2.550e-5543.43Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A2R5GQ24_9STRA5.340e-4338.78Leucine-rich repeat protein lrrA n=1 Tax=Hondaea f... [more]
W4FNV6_9STRA4.010e-3839.36Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A485LD80_9STRA1.580e-3738.37Aste57867_19096 protein n=1 Tax=Aphanomyces stella... [more]
A0A5D6XYF5_9STRA2.410e-3737.80Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A6A5ABT3_9STRA6.910e-3740.18Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A6G0XC80_9STRA9.800e-3736.86Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
T0SH23_SAPDV2.760e-3640.34Uncharacterized protein n=3 Tax=Saprolegnia TaxID=... [more]
A0A7S2UUH4_9STRA5.110e-3635.02Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2BKK2_9STRA2.900e-3535.46Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10147contigS-firma_F_contig10147:537..1967 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog115417.EPrPW00000018318
Max annot lvl121069|Pythiales
Evalue1.09e-17
EggNOG OGsCOG4886@1|root,KOG0619@2759|Eukaryota,1MF2Q@121069|Pythiales
Descriptionleucine rich repeat protein. Source PGD
COG categoryS
Hectar predicted targeting categoryother localisation
Exons6
Model size1090
Cds size396
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815542.619598-CDS-S-firma_F_contig10147:536..8031622815542.619598-CDS-S-firma_F_contig10147:536..803Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10147 537..803 -
1696949403.6462233-CDS-S-firma_F_contig10147:536..8031696949403.6462233-CDS-S-firma_F_contig10147:536..803Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10147 537..803 -
1622815542.6320174-CDS-S-firma_F_contig10147:856..9031622815542.6320174-CDS-S-firma_F_contig10147:856..903Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10147 857..903 -
1696949403.6582587-CDS-S-firma_F_contig10147:856..9031696949403.6582587-CDS-S-firma_F_contig10147:856..903Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10147 857..903 -
1622815542.6433623-CDS-S-firma_F_contig10147:976..10581622815542.6433623-CDS-S-firma_F_contig10147:976..1058Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10147 977..1058 -
1696949403.6752248-CDS-S-firma_F_contig10147:976..10581696949403.6752248-CDS-S-firma_F_contig10147:976..1058Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10147 977..1058 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815542.657369-UTR-S-firma_F_contig10147:1058..10761622815542.657369-UTR-S-firma_F_contig10147:1058..1076Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10147 1059..1076 -
1696949403.688239-UTR-S-firma_F_contig10147:1058..10761696949403.688239-UTR-S-firma_F_contig10147:1058..1076Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10147 1059..1076 -
1622815542.6715689-UTR-S-firma_F_contig10147:1138..13371622815542.6715689-UTR-S-firma_F_contig10147:1138..1337Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10147 1139..1337 -
1696949403.6968322-UTR-S-firma_F_contig10147:1138..13371696949403.6968322-UTR-S-firma_F_contig10147:1138..1337Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10147 1139..1337 -
1622815542.6850998-UTR-S-firma_F_contig10147:1390..17701622815542.6850998-UTR-S-firma_F_contig10147:1390..1770Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10147 1391..1770 -
1696949403.7051158-UTR-S-firma_F_contig10147:1390..17701696949403.7051158-UTR-S-firma_F_contig10147:1390..1770Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10147 1391..1770 -
1622815542.6975954-UTR-S-firma_F_contig10147:1870..19671622815542.6975954-UTR-S-firma_F_contig10147:1870..1967Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10147 1871..1967 -
1696949403.7142494-UTR-S-firma_F_contig10147:1870..19671696949403.7142494-UTR-S-firma_F_contig10147:1870..1967Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10147 1871..1967 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10147.248.1prot_S-firma_F_contig10147.248.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10147 537..1058 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10147.248.1

>prot_S-firma_F_contig10147.248.1 ID=prot_S-firma_F_contig10147.248.1|Name=mRNA_S-firma_F_contig10147.248.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=132bp
MVKSIYQHVTVLEDVKFMLFFARELFPDTPEEVSGELMLRNIHALRKRRA
EERAAATAMLAKALGGLYPDREPPELQELSERMAKALKGAVGDLKALASD
AAEYFPAEFTSARPRRILLAFSKAKAEKMGL*
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mRNA from alignment at S-firma_F_contig10147:537..1967-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10147.248.1 ID=mRNA_S-firma_F_contig10147.248.1|Name=mRNA_S-firma_F_contig10147.248.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1431bp|location=Sequence derived from alignment at S-firma_F_contig10147:537..1967- (Sphaerotrichia firma ET2_F female)
ACGGACCTGGTGCGGCTGGACCTCAGCAACAACGACCTCAGGGAGTTGCC CGCGGACGTCCGCAACCTGACTGCACTGCAAGAGCTGTGGCTGAATGGTG CGTTTGCTTGCAAGACTCAACTCCACCGCGCTGTACACCGCTGCCTGGCC GTTTTGCCGCACGCTGCAGGGGCATGTCATGACCTTGCCACGTCCAGGAA ACCCCTTGGAGGCGCTGCCCACCACGATTGAGTTCTGCACACAGTTGCGG TTCATTGACGTGCGCGGCACCATGATTCGGGACTTGCCGAAGGAGGTCTC CCGCCTCCCCCGCCTTGCCGACATTGCGCTGTCACAGCGCGCCCTGACGC CCCAGCTCGCTGCCGCTGCCAGGTTTGTGGGGGCGTGTTGTGTTCCGCTT TTGGACTGACACCTTGTGCAGCGGGGGGACCAGAAGCCTCCTCCAGCACC TGGCCTTCAAGGACGAGAGCCGCCAAATCAGTGAGATTTTGCGCAGAAAA CTGGACACTGACGTGTACCGGGAGGTGTCGGGCACCGCGCACGGGGCCGC CCTCATTGAGGCGCTTGTTGCGCAGTGGTGCGTGCCTTGCTCCGACGTTG CATGGCTGTAACCCCACTGTCCCCGGCCAGTGCGGACACGTTCCAAGACC TGGAGACCTTCCGGCAGGTCACACGCAACGCAGAGCGCCTTTTCCCCGCC GACTTGGACATTGCTGACGCGGGGGCCATTGCAAAGCTGTACAAGTCCCT GAAGCGCGACAACGAGAAGCAAAAGCTTGCGGCTGAGGTGGAGCTCAAGG TTCGGGCGATTTACTTTGACCGCATCAGGGTGGGGTTGGGGGAGGGGCTT TGGTGTGGAGCCAGGGTGTTCCTCACCACACACACACGCAGGTGGAGCTT GTGCCAGACATGGTAAAGTCGATTTACCAACACGTCACCGTGCTGGAGGA CGTCAAGTTCATGCTCTTTTTTGCGCGTGAGCTGTTTCCTGGTGGGTGGG GGTGCTCCGGTGAACGCAGTGTGTGGGTTTTCACCCCGTGCGCGCTATTT GCCTGCTTGTTCAGACACGCCGGAGGAAGTCTCTGGTGAACTCATGCTCC GCAACATCCACGTGCGTGTGTGCAGGGCTGGGTTTGATGCGCCACCTTAC ACAACCCCCCGCAGGCCCTCAGGAAGCGGCGGGCTGAAGAACGTGCTGCG GCCACCGCTATGCTTGCCAAAGCCTTGGGCGGGCTGTACCCGGACCGCGA GCCCCCAGAACTCCAGGAGCTGTCGGAGCGCATGGCCAAGGCCCTGAAGG GCGCCGTCGGTGACCTGAAGGCCCTCGCCAGCGACGCCGCCGAGTACTTC CCGGCAGAGTTCACGTCCGCGCGGCCACGCCGCATTCTGCTAGCGTTCAG CAAGGCAAAGGCTGAGAAAATGGGGCTGTAG
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Coding sequence (CDS) from alignment at S-firma_F_contig10147:537..1967-

>mRNA_S-firma_F_contig10147.248.1 ID=mRNA_S-firma_F_contig10147.248.1|Name=mRNA_S-firma_F_contig10147.248.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=792bp|location=Sequence derived from alignment at S-firma_F_contig10147:537..1967- (Sphaerotrichia firma ET2_F female)
ATGGTAAAGTCGATTTACCAACACGTCACCGTGCTGGAGGACGTCAAGTT
CATGCTCTTTTTTGCGCGTGAGCTGTTTCCTGATGGTAAAGTCGATTTAC
CAACACGTCACCGTGCTGGAGGACGTCAAGTTCATGCTCTTTTTTGCGCG
TGAGCTGTTTCCTGACACGCCGGAGGAAGTCTCTGGTGAACTCATGCTCC
GCAACATCCACACACGCCGGAGGAAGTCTCTGGTGAACTCATGCTCCGCA
ACATCCACGCCCTCAGGAAGCGGCGGGCTGAAGAACGTGCTGCGGCCACC
GCTATGCTTGCCAAAGCCTTGGGCGGGCTGTACCCGGACCGCGAGCCCCC
AGAACTCCAGGAGCTGTCGGAGCGCATGGCCAAGGCCCTGAAGGGCGCCG
TCGGTGACCTGAAGGCCCTCGCCAGCGACGCCGCCGAGTACTTCCCGGCA
GAGTTCACGTCCGCGCGGCCACGCCGCATTCTGCTAGCGTTCAGCAAGGC
AAAGGCTGAGAAAATGGGGCTGTAGGCCCTCAGGAAGCGGCGGGCTGAAG
AACGTGCTGCGGCCACCGCTATGCTTGCCAAAGCCTTGGGCGGGCTGTAC
CCGGACCGCGAGCCCCCAGAACTCCAGGAGCTGTCGGAGCGCATGGCCAA
GGCCCTGAAGGGCGCCGTCGGTGACCTGAAGGCCCTCGCCAGCGACGCCG
CCGAGTACTTCCCGGCAGAGTTCACGTCCGCGCGGCCACGCCGCATTCTG
CTAGCGTTCAGCAAGGCAAAGGCTGAGAAAATGGGGCTGTAG
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