mRNA_S-firma_F_contig10145.247.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10145.247.1
Unique NamemRNA_S-firma_F_contig10145.247.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10145.247.1 vs. uniprot
Match: D7G4W1_ECTSI (Lactamase_B domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4W1_ECTSI)

HSP 1 Score: 428 bits (1100), Expect = 1.130e-145
Identity = 206/242 (85.12%), Postives = 221/242 (91.32%), Query Frame = 1
Query:    7 RVRHVQIDTGKTWREGVIRWFPRHGVPGIDGIILTHDHADAMLGLDDVRSVQAPRKERASTPVFVSEQTDRSVRRVFPYLVGREDDNGRGGRYVAALKFNAFQDFEPFEVGGLEVTPFPVLHGEDYVSHGFLFGPERNKVCYISDVSRVPPESMEFLQRQGPMQLLVCDALTRSQKHPTHFSVEDSVVLAGQLKARRTLLVGLGSDIEYHATNALLASREEASPDMPHVRLAYDGLAVDVDL 732
            +V+HVQIDTGKTWREG IRWFPRHGV G+DGI+LTHDHADAMLGLDDVRS+Q  RK R  TPV VSE+TDRSVRRVFPYLVGREDDNG GGR+VAAL FN FQDF+PFEVGGLE+TPFPV+HGEDYVSHGFLFGPE NK+CYISDVSRVPPESMEFL++ GPMQLLVCDAL  S+KH THF VEDSVVLAGQLKARRTLLVGLGSDIEYHATNA+LASREE    MPHVRLAYDGLAVDVDL
Sbjct:  254 QVKHVQIDTGKTWREGAIRWFPRHGVRGLDGIVLTHDHADAMLGLDDVRSIQDSRK-RTPTPVHVSERTDRSVRRVFPYLVGREDDNGAGGRFVAALNFNVFQDFQPFEVGGLEITPFPVMHGEDYVSHGFLFGPEGNKICYISDVSRVPPESMEFLEKHGPMQLLVCDALMVSKKHRTHFCVEDSVVLAGQLKARRTLLVGLGSDIEYHATNAMLASREEEELGMPHVRLAYDGLAVDVDL 494          
BLAST of mRNA_S-firma_F_contig10145.247.1 vs. uniprot
Match: A0A6H5JEM8_9PHAE (Lactamase_B domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEM8_9PHAE)

HSP 1 Score: 325 bits (833), Expect = 6.040e-107
Identity = 151/181 (83.43%), Postives = 165/181 (91.16%), Query Frame = 1
Query:    7 RVRHVQIDTGKTWREGVIRWFPRHGVPGIDGIILTHDHADAMLGLDDVRSVQAPRKERASTPVFVSEQTDRSVRRVFPYLVGREDDNGRGGRYVAALKFNAFQDFEPFEVGGLEVTPFPVLHGEDYVSHGFLFGPERNKVCYISDVSRVPPESMEFLQRQGPMQLLVCDALTRSQKHPTHF 549
            +V+HVQIDTGKTWREG IRWFPRHGV G+DGI+LTHDHADAMLGLDDVRS+Q  RK R  TPV VSE+TDRSVRRVFPYLVGREDDNG GGR+VAAL FN FQDF+PFEVGGLE+TPFPV+HGEDYVSHGFLFGPE NK+CYISDVSRVPPESMEFL++ GPMQLLVCDAL  S+KH THF
Sbjct:  193 QVKHVQIDTGKTWREGAIRWFPRHGVRGLDGIVLTHDHADAMLGLDDVRSIQDSRK-RTPTPVHVSERTDRSVRRVFPYLVGREDDNGAGGRFVAALNFNVFQDFQPFEVGGLEITPFPVMHGEDYVSHGFLFGPEGNKICYISDVSRVPPESMEFLEKHGPMQLLVCDALMVSKKHRTHF 372          
BLAST of mRNA_S-firma_F_contig10145.247.1 vs. uniprot
Match: A0A835ZCK6_9STRA (Beta-lactamase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCK6_9STRA)

HSP 1 Score: 216 bits (549), Expect = 1.770e-64
Identity = 121/252 (48.02%), Postives = 151/252 (59.92%), Query Frame = 1
Query:   25 IDTGKTWREGVIRWFPRHGVPGIDGIILTHDHADAMLGLDDVRSVQAPRKERASTPVFVSEQTDRSVRRVFPYLVGREDDNGRGG-RYVAALKFNAFQDFEPFEVGGLEVTPFPVLHGEDYVSHGFLFGPERNKVCYISDVSRVPPESMEFLQRQGPMQLLVCDALTRSQKHPTHFSVEDSVVLAGQLKARRTLLVGLGSDIEYHATNALLASREEASPDMPHVRLAYDGLAVDVDL*EGTSFQHTDLECGV 777
            IDTGKT+REGV+RW+PRH V  +DGI+L+HDHADA+LGLDDVR +Q        TPV V  +T  S++RVFPYL G    NG+ G R+VAAL F  F   EPF V GL + P PV+HGEDY+S+GF+FGP   +  YISD SRVPP++M  L+R+  + LLV DAL + + HPTHFS+  SV LA  L+A    +    S    HA  AL       +P  P   L             GT   H DL   V
Sbjct:   23 IDTGKTFREGVLRWYPRHDVTSLDGIVLSHDHADAILGLDDVRGLQ--NSADPPTPVLVDSRTMHSLQRVFPYLCGT---NGKAGIRHVAALDFRTFTPHEPFTVAGLTMLPIPVVHGEDYMSNGFIFGPAHARTVYISDCSRVPPDTMAVLRRER-IALLVVDALLKDRAHPTHFSMAQSVELARDLRAACARIFTAASRALPHALRALTCLPAHPAPRQPLRTLMV-----------GTGSDHHDLHAPV 257          
BLAST of mRNA_S-firma_F_contig10145.247.1 vs. uniprot
Match: A0A1J7G538_LUPAN (Lactamase_B domain-containing protein n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=A0A1J7G538_LUPAN)

HSP 1 Score: 202 bits (513), Expect = 2.330e-59
Identity = 108/247 (43.72%), Postives = 161/247 (65.18%), Query Frame = 1
Query:   16 HVQIDTGKTWREGVIRWFPRHGVPGIDGIILTHDHADAMLGLDDVRSVQ--APRKERASTPVFVSEQTDRSVRRVFPYLVGREDDNGRGGRYVAALKFNAFQDF--EPFEVGGLEVTPFPVLHGEDYVSHGFLFGPERNKVCYISDVSRVPPESMEFLQRQGPMQL--LVCDALTRSQKHPTHFSVEDSVVLAGQLKARRTLLVGLGSDIEYHATNALLA--SREEASPDMPHVRLAYDGLAVDVDL 732
            ++ ID GK+++E V+RWF  H +P ID IILTH+HADA+LGLDDVRSVQ  +P  +  STP+++S+ +  S+++ FPYLV ++   G+  R+VA + +N   D   +PF   GL+ TP PV+HGEDY+  GFLFG E+++V YISDVSR+P  +   + + G  QL  L+ D+L R+  H  H  +  ++    +L  +RTLL+G+  + ++H  N LL   SR E  P    V+LA+DGL V ++L
Sbjct:   85 YILIDAGKSFKEAVLRWFVPHQIPRIDSIILTHEHADAVLGLDDVRSVQHFSPTNDINSTPIYLSQHSMNSIKQKFPYLVEKKRKEGQEIRWVAQMAWNIIADNFNQPFFASGLKFTPLPVMHGEDYICLGFLFG-EKSRVAYISDVSRIPVSTEYVISKSGAGQLDLLILDSLCRTGSHNFHLCLPQALETVKRLCPKRTLLIGMTHEFDHHRDNELLTEWSRREGIP----VQLAHDGLRVPINL 326          
BLAST of mRNA_S-firma_F_contig10145.247.1 vs. uniprot
Match: B9SZL3_RICCO (Lactamase_B domain-containing protein n=3 Tax=Ricinus communis TaxID=3988 RepID=B9SZL3_RICCO)

HSP 1 Score: 198 bits (503), Expect = 7.300e-58
Identity = 110/252 (43.65%), Postives = 160/252 (63.49%), Query Frame = 1
Query:    1 EVRVRHVQIDTGKTWREGVIRWFPRHGVPGIDGIILTHDHADAMLGLDDVRSVQ--APRKERASTPVFVSEQTDRSVRRVFPYLVGREDDNGRGGRYVAALKFNAFQDF--EPFEVGGLEVTPFPVLHGEDYVSHGFLFGPERNKVCYISDVSRVPPESMEFLQRQGPMQ--LLVCDALTRSQKHPTHFSVEDSVVLAGQLKARRTLLVGLGSDIEYHATNALLA--SREEASPDMPHVRLAYDGLAVDVDL 732
            E + +++ ID GKT+RE V+RWF  H +P +D IILTH+HADA+LGLDD+R+VQ  +P  E    PV++S+ T  S+   FPYL+ +E   G+  R+VA L++   ++    PF   G++  P PV+HGEDYVS GFLFG E+++V YISDVSR P  +   + + G  Q  LL+ D L RS  H  HF +  S+    +L  ++ LL+G+G +I+++  N  LA  S+ E  P    V+LA+DGL V +DL
Sbjct:   81 EEKHKYILIDVGKTFREQVLRWFTFHKIPRVDSIILTHEHADAVLGLDDIRTVQPFSPTNEVDPVPVYLSQPTMNSITLKFPYLIKKEL-RGQEIRHVAQLEWKIIEEDCQRPFVASGVQFVPLPVIHGEDYVSLGFLFG-EKSRVAYISDVSRFPASTEYVISKAGAGQVDLLILDTLRRSGSHNVHFCLPQSLEAVKRLCPKQALLIGMGHEIDHYKDNVFLAEWSKREGIP----VQLAFDGLRVTIDL 326          
BLAST of mRNA_S-firma_F_contig10145.247.1 vs. uniprot
Match: A0A1S2XA09_CICAR (putative hydrolase C777.06c n=2 Tax=NPAAA clade TaxID=2231382 RepID=A0A1S2XA09_CICAR)

HSP 1 Score: 196 bits (497), Expect = 4.870e-57
Identity = 105/247 (42.51%), Postives = 157/247 (63.56%), Query Frame = 1
Query:   16 HVQIDTGKTWREGVIRWFPRHGVPGIDGIILTHDHADAMLGLDDVRSVQ--APRKERASTPVFVSEQTDRSVRRVFPYLVGREDDNGRGGRYVAALKFNAFQDF--EPFEVGGLEVTPFPVLHGEDYVSHGFLFGPERNKVCYISDVSRVPPESMEFLQRQGPMQL--LVCDALTRSQKHPTHFSVEDSVVLAGQLKARRTLLVGLGSDIEYHATNALLA--SREEASPDMPHVRLAYDGLAVDVDL 732
            ++ ID GKT+RE V+RWF  H +P ID IILTH+HADA+LGLDD+R+VQ  +P  +   TP+++S+ +  S+   FPYLV ++   G+  R VA + +N  +D   +PF   GL+ TP PV+HGEDY+  GFLFG E+++V YISDVSR+P  +   + + G  QL  L+ D+L R+  H  H     ++    +L  ++TLL+G+  + ++H  N  LA  SR E  P    V+L++DGL V ++L
Sbjct:   79 YILIDVGKTFRETVLRWFVSHRIPRIDSIILTHEHADAVLGLDDIRAVQPFSPTNDIDPTPIYLSQHSMDSIEEKFPYLVQKKRKEGQEIRRVAQIAWNIIRDDCNQPFFASGLKFTPLPVMHGEDYICLGFLFG-EKSRVAYISDVSRIPASTEYVISKSGAGQLDLLILDSLYRTGSHNVHLCFPQTLETVKRLCPKKTLLIGMTHEFDHHKDNEFLAEWSRREGIP----VQLSHDGLRVPINL 320          
BLAST of mRNA_S-firma_F_contig10145.247.1 vs. uniprot
Match: V4MQ82_EUTSA (Lactamase_B domain-containing protein n=14 Tax=Brassicaceae TaxID=3700 RepID=V4MQ82_EUTSA)

HSP 1 Score: 196 bits (497), Expect = 5.440e-57
Identity = 107/248 (43.15%), Postives = 153/248 (61.69%), Query Frame = 1
Query:   13 RHVQIDTGKTWREGVIRWFPRHGVPGIDGIILTHDHADAMLGLDDVRSVQ--APRKERASTPVFVSEQTDRSVRRVFPYLVGREDDNGRGGRYVAALKFNAFQDF--EPFEVGGLEVTPFPVLHGEDYVSHGFLFGPERNKVCYISDVSRVPPESMEFLQRQG--PMQLLVCDALTRSQKHPTHFSVEDSVVLAGQLKARRTLLVGLGSDIEYHATNALLA--SREEASPDMPHVRLAYDGLAVDVDL 732
            +++QID GKT+RE V+RWF  H +P +D IILTH+HADA+LGLDD+RSVQ  +P  +   TP+FVS+    S+   FPYLV ++   G+  R VA L +   ++   +PF    L  TP PV+HGEDYV  GFLFG E+++V YISDVSR PP +   + + G   + LL+ D L ++  H TH     ++    +L  +R LL+G+  + ++H  N  L   S+ E  P    V+LA+DGL V +DL
Sbjct:   82 KYIQIDVGKTFREQVLRWFTLHKIPRVDSIILTHEHADAVLGLDDIRSVQPFSPTNDIDPTPIFVSQYAMDSLAVKFPYLVQKKLKEGQEVRRVAQLDWRVIEEDCEKPFVASDLSFTPLPVMHGEDYVCLGFLFG-EKSRVAYISDVSRFPPNTEYVISKSGGGQLDLLILDTLYKTGSHNTHLCFPQTLDTIKRLSPKRALLIGMTHEFDHHKDNEFLEEWSKREGIP----VKLAHDGLRVPIDL 324          
BLAST of mRNA_S-firma_F_contig10145.247.1 vs. uniprot
Match: G7IP30_MEDTR (Metallo-hydrolase/oxidoreductase superfamily protein n=4 Tax=Trifolieae TaxID=163742 RepID=G7IP30_MEDTR)

HSP 1 Score: 195 bits (495), Expect = 9.680e-57
Identity = 105/247 (42.51%), Postives = 156/247 (63.16%), Query Frame = 1
Query:   16 HVQIDTGKTWREGVIRWFPRHGVPGIDGIILTHDHADAMLGLDDVRSVQ--APRKERASTPVFVSEQTDRSVRRVFPYLVGREDDNGRGGRYVAALKFNAFQDF--EPFEVGGLEVTPFPVLHGEDYVSHGFLFGPERNKVCYISDVSRVPPESMEFLQRQGPMQL--LVCDALTRSQKHPTHFSVEDSVVLAGQLKARRTLLVGLGSDIEYHATNALLA--SREEASPDMPHVRLAYDGLAVDVDL 732
            ++ ID GKT+RE V+RWF  H +P ID IILTH+HADA+LGLDDVR+VQ  +P  +   TP+++S+ +  S+   FPYLV ++   G+  R VA + +N   D   +PF   GL+ TP PV+HGEDY+  GFLFG E+++V YISDVSR+P  +   + + G  QL  L+ D+L R+  H  H     ++ +  +L  ++TLL+G+  + ++H  N  L   SR E  P    V+L++DGL V ++L
Sbjct:   79 YILIDVGKTFRETVLRWFVHHRIPKIDSIILTHEHADAVLGLDDVRAVQPFSPTNDIDPTPIYLSQHSMDSIEEKFPYLVQKQRKEGQEIRRVAQMAWNIITDDCNQPFFASGLKFTPLPVMHGEDYICLGFLFG-EKSRVAYISDVSRIPASTEYVISKSGAGQLDLLILDSLYRTGSHNVHLCFPQTLEIVKRLCPKQTLLIGMTHEFDHHKDNEFLKEWSRREGIP----VQLSHDGLRVPINL 320          
BLAST of mRNA_S-firma_F_contig10145.247.1 vs. uniprot
Match: A0A176VB99_MARPO (Lactamase_B domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VB99_MARPO)

HSP 1 Score: 197 bits (502), Expect = 1.110e-56
Identity = 110/247 (44.53%), Postives = 154/247 (62.35%), Query Frame = 1
Query:   13 RHVQIDTGKTWREGVIRWFPRHGVPGIDGIILTHDHADAMLGLDDVRSVQA--PRKERASTPVFVSEQTDRSVRRVFPYLVGREDDNGRGGRYVAALKFNAFQDF--EPFEVGGLEVTPFPVLHGEDYVSHGFLFGPERNKVCYISDVSRVPPESMEFLQRQG---PMQLLVCDALTRSQKHPTHFSVEDSVVLAGQLKARRTLLVGLGSDIEYHATNALLASREEASPDMPHVRLAYDGLAVDVDL 732
            R++QID GK ++E V+RWF  H VP +D ++LTH+HADAMLGLDD+R VQ      + A+ PVFVS+ T  SV   FPYLV +    G+  R VA L +          F+  GLE+TP PV+HGEDY+S GFLFG ++++V YISDVSR+P  + + +   G   P+ +L+ D+L +S  H THF  EDS+    +L+ RR   VG+  + E+   NA LA  E +  +   V+LAYDG+ + V L
Sbjct:  173 RYIQIDAGKNFKEQVLRWFLIHKVPRLDALLLTHEHADAMLGLDDIRGVQNYNSMNDIAAMPVFVSQHTMDSVNAKFPYLVEKTLKEGQEVRRVAQLDWRVIDTSCSALFDAVGLEITPLPVMHGEDYLSLGFLFG-KKHRVAYISDVSRIPETTEQVISAAGDLGPVDILILDSLYKSGPHNTHFCYEDSLAAVKRLRPRRAFFVGMTHEFEHERDNAELA--EWSQREGIEVQLAYDGMRIPVCL 416          
BLAST of mRNA_S-firma_F_contig10145.247.1 vs. uniprot
Match: K7M157_SOYBN (Lactamase_B domain-containing protein n=10 Tax=Phaseoleae TaxID=163735 RepID=K7M157_SOYBN)

HSP 1 Score: 194 bits (493), Expect = 1.980e-56
Identity = 107/248 (43.15%), Postives = 153/248 (61.69%), Query Frame = 1
Query:   13 RHVQIDTGKTWREGVIRWFPRHGVPGIDGIILTHDHADAMLGLDDVRSVQA--PRKERASTPVFVSEQTDRSVRRVFPYLVGREDDNGRGGRYVAALKFNAFQDF--EPFEVGGLEVTPFPVLHGEDYVSHGFLFGPERNKVCYISDVSRVPPESMEFLQRQGPMQL--LVCDALTRSQKHPTHFSVEDSVVLAGQLKARRTLLVGLGSDIEYHATNALLA--SREEASPDMPHVRLAYDGLAVDVDL 732
            +++ ID GKT+RE V+RWF  H +P +D IILTH+HADA+LGLDDVR+VQA  P  +   TP+++S+ +  S+   FPYLV ++   G   R VA + +N   D   +PF   GL+ TP PV+HGEDY+  GFLFG E+N+V YISDVSR P  +   + + G  QL  L+ D+L RS  H  H     ++    +L  ++TLL+G+  + ++H  N  L   S+ E  P    V LA+DGL V ++L
Sbjct:   79 KYILIDVGKTFRETVLRWFVAHRIPRVDSIILTHEHADAVLGLDDVRAVQAFSPTNDIDPTPIYLSQHSMDSIAEKFPYLVQKKRKEGAEIRRVAQIDWNIIADDCNKPFLASGLKFTPLPVMHGEDYICLGFLFG-EKNRVAYISDVSRFPASTEYVISKSGAGQLDLLILDSLYRSGSHNVHLCFPQTLETVKRLCPKQTLLIGMTHEFDHHKDNEFLMEWSKREGIP----VELAHDGLRVPINL 321          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10145.247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4W1_ECTSI1.130e-14585.12Lactamase_B domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JEM8_9PHAE6.040e-10783.43Lactamase_B domain-containing protein n=1 Tax=Ecto... [more]
A0A835ZCK6_9STRA1.770e-6448.02Beta-lactamase-like protein n=1 Tax=Tribonema minu... [more]
A0A1J7G538_LUPAN2.330e-5943.72Lactamase_B domain-containing protein n=1 Tax=Lupi... [more]
B9SZL3_RICCO7.300e-5843.65Lactamase_B domain-containing protein n=3 Tax=Rici... [more]
A0A1S2XA09_CICAR4.870e-5742.51putative hydrolase C777.06c n=2 Tax=NPAAA clade Ta... [more]
V4MQ82_EUTSA5.440e-5743.15Lactamase_B domain-containing protein n=14 Tax=Bra... [more]
G7IP30_MEDTR9.680e-5742.51Metallo-hydrolase/oxidoreductase superfamily prote... [more]
A0A176VB99_MARPO1.110e-5644.53Lactamase_B domain-containing protein n=2 Tax=Marc... [more]
K7M157_SOYBN1.980e-5643.15Lactamase_B domain-containing protein n=10 Tax=Pha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10145contigS-firma_F_contig10145:2..3691 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7G4W1
PFAMsLactamase_B_2
Max annot lvl2759|Eukaryota
KEGG rclassRC00296
KEGG koko:K06167
KEGG ReactionR10205
KEGG Pathwayko00440,map00440
GOsGO:0003674,GO:0003824,GO:0016787
Evalue1.46e-116
EggNOG OGsCOG1235@1|root,2QWBK@2759|Eukaryota
Ec32 ortholog descriptionBeta-lactamase-like
Ec32 orthologEc-20_000110.1
EC3.1.4.55
DescriptionBeta-lactamase superfamily domain
COG categoryS
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons6
Model size941
Cds size606
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10145.247.1prot_S-firma_F_contig10145.247.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10145 386..3485 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815542.5036278-UTR-S-firma_F_contig10145:1..751622815542.5036278-UTR-S-firma_F_contig10145:1..75Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10145 2..75 +
1696949403.5143995-UTR-S-firma_F_contig10145:1..751696949403.5143995-UTR-S-firma_F_contig10145:1..75Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10145 2..75 +
1622815542.5159402-UTR-S-firma_F_contig10145:330..3851622815542.5159402-UTR-S-firma_F_contig10145:330..385Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10145 331..385 +
1696949403.5363812-UTR-S-firma_F_contig10145:330..3851696949403.5363812-UTR-S-firma_F_contig10145:330..385Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10145 331..385 +
1622815542.5872893-UTR-S-firma_F_contig10145:3485..36911622815542.5872893-UTR-S-firma_F_contig10145:3485..3691Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10145 3486..3691 +
1696949403.6309638-UTR-S-firma_F_contig10145:3485..36911696949403.6309638-UTR-S-firma_F_contig10145:3485..3691Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10145 3486..3691 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815542.5267105-CDS-S-firma_F_contig10145:385..4181622815542.5267105-CDS-S-firma_F_contig10145:385..418Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10145 386..418 +
1696949403.5539417-CDS-S-firma_F_contig10145:385..4181696949403.5539417-CDS-S-firma_F_contig10145:385..418Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10145 386..418 +
1622815542.5387664-CDS-S-firma_F_contig10145:756..8241622815542.5387664-CDS-S-firma_F_contig10145:756..824Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10145 757..824 +
1696949403.5625765-CDS-S-firma_F_contig10145:756..8241696949403.5625765-CDS-S-firma_F_contig10145:756..824Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10145 757..824 +
1622815542.5512002-CDS-S-firma_F_contig10145:1486..15891622815542.5512002-CDS-S-firma_F_contig10145:1486..1589Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10145 1487..1589 +
1696949403.5764852-CDS-S-firma_F_contig10145:1486..15891696949403.5764852-CDS-S-firma_F_contig10145:1486..1589Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10145 1487..1589 +
1622815542.5682454-CDS-S-firma_F_contig10145:1982..22001622815542.5682454-CDS-S-firma_F_contig10145:1982..2200Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10145 1983..2200 +
1696949403.595623-CDS-S-firma_F_contig10145:1982..22001696949403.595623-CDS-S-firma_F_contig10145:1982..2200Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10145 1983..2200 +
1622815542.578011-CDS-S-firma_F_contig10145:3301..34851622815542.578011-CDS-S-firma_F_contig10145:3301..3485Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10145 3302..3485 +
1696949403.6131008-CDS-S-firma_F_contig10145:3301..34851696949403.6131008-CDS-S-firma_F_contig10145:3301..3485Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10145 3302..3485 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10145.247.1

>prot_S-firma_F_contig10145.247.1 ID=prot_S-firma_F_contig10145.247.1|Name=mRNA_S-firma_F_contig10145.247.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=202bp
MLGLDDVRSVQAPRKERASTPVFVSEQTDRSVRRVFPYLVGREDDNGRGG
RYVAALKFNAFQDFEPFEVGGLEVTPFPVLHGEDYVSHGFLFGPERNKVC
YISDVSRVPPESMEFLQRQGPMQLLVCDALTRSQKHPTHFSVEDSVVLAG
QLKARRTLLVGLGSDIEYHATNALLASREEASPDMPHVRLAYDGLAVDVD
L*
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mRNA from alignment at S-firma_F_contig10145:2..3691+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10145.247.1 ID=mRNA_S-firma_F_contig10145.247.1|Name=mRNA_S-firma_F_contig10145.247.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3690bp|location=Sequence derived from alignment at S-firma_F_contig10145:2..3691+ (Sphaerotrichia firma ET2_F female)
GAGGTTCGAGTGCGGCATGTCCAGATTGACACTGGCAAGACGTGGCGAGA AGGCGTCATCAGATGGTTTCCGCGGTGAGAGGATGGCCTGGAGCAGGTCA TGAATGATCGAGTTCAGCTTTCAGGACTTCAAATACACGGGTGTCTGTGT TGGTGGTGTCTAGTGCGGAGCACCAGGGAGTGGAATGCTGTGAAGGGAAT CTGGCTCGACGTGCTTCTTGTTTTCGGTTGCGATGACACGCTTCGCTCTC TGATTTTTCTTCGTTTTCTGTGGCTGACCGCCTGCCCCGCGCGTTAACCC TACACCTCCGAAAATGTTTGTGTGGGCAGTCATGGGGTGCCTGGAATAGA CGGGATCATACTGACACATGATCATGCCGACGCCATGCTCGGACTGGACG ATGTCAGAAGCGTACAGGTACGTGATGTAACATGCACACGCTTGCACAGC AGGCGCCCACAAGGGAGAGGTGGAGAGAGCTCACCGACACGTCTGAGGAT CTTCGAATATGATAATCTGACCTGTCCGGAGGCCGTTCTCTTCCCACTTT CCACCCTACCCGCCGTGCCTTTCTTTGTTCGAAACGTCGGCAGTCGATGA AGGGATACTCACAGCACACAGGCCGGCGTTCACCCATGCCGACTGGGGTT GTTGTAAAGATCGTGGTTTCGCTGATGCTTCTCCCTCGATATCCACCAAC ATACGCGCTCAAAAAGCACGCTCAACGCTTGCTGTTTGCACACGTCGACG TCCAGGCTCCAAGAAAGGAAAGAGCTTCCACGCCCGTGTTTGTGTCCGAG CAGACCGACCGATCGGTGAGGAGGTGAGCAGAGCAGAGCATCCGCCTCGT CCGTCCGGTCGACATTCTTGCCGTCGGTGTTTGTTCGAAGCATGTGCGTT GTCGCGGCCGTCGAAGAGCCTGGTCGTCTTCCTGCAGGACGTCAGCACAT CTGACCCGTTCGCGGATTGTGGTCGCATTCTGTAGACTAGGCCTACGAGT TTCGTTTCCACCCCGAGCAGCATTTTTTGTTGTGGAAGTGCTCCCTTTTG TGTTGAATGCTGTTTCTTGCGAGACCATCTGCCCGGTTTTATGAGCTGCA GCTTTTTGGATGCCGCCCGACCACTATCCGCACTCGCCAGTTCGTTGCAC CTCCCTTCGAGCAATGCCCGAGTGCTCGTAATAGCGTACTAACCAGTGTT GATGGTCCGGGGTTCGAGCGTTAGTCGAAGCCCGCAGATTGGGCCTTGTC TTTCCGCATATGGGTCTACGACACATGGCAGCAAGGAAAAGCCATCAGCC GAAATCACCCAAAACGCAAATCACACCAAAAGACCGTTGGTATACCGCAA CGGCTTCGTAGTCTTGGCGCGCAATTTGCTGGCGTGCTAAGCTGGACTGT TGATATCCTTCATCGGATCGGCACCGTTTGACTGGACTTGATTTAGAGGG GAAAGCGTTGCTTCGTGGCATCATTTTTTGTGCAGGGTTTTCCCTTACCT GGTGGGGCGTGAGGATGACAACGGGAGAGGTGGGCGCTACGTGGCGGCCT TGAAGTTCAACGCCTTCCAAGACTTCGAGCCGTTCGAGGTCAGCAAGTAC AATCAAAGCTCACGTTGACCGGCTTCCGACCCCTTCGGTAGATGTCACAT CGCCCTTCCACGGTGTTTGGGATCTCTGTCACGTGTGTGTGTGTGACCCA GTAACCTCGTTCGCCACCTGGGACATGCTCTGCTCTATTGACGGACACGT ACGAACGCAACATCCTGAGTCCGAGTGAGGCGTAACGTGGTTTCTGAAGG TGCCATGGTGCGAGCGCACGCTGCCGTCGTTGCCGCTAGAGTTGATACAA GGGTGGTCCCAACACCGCCGACTCGGGAGTCGGAACGGCTTCGCCCTGGA CACCTGACACCTGTGGCGTGCTTGGGTTTTCAAGTCAGCAGCATTTAATG TTTGGACCGCTTCTTCATGCCCCATCCCCAGGTCGGCGGGCTCGAAGTGA CCCCCTTTCCGGTGCTGCACGGGGAGGACTACGTCTCCCACGGCTTTCTC TTCGGCCCCGAGAGAAACAAGGTTTGCTACATCTCGGACGTCAGCCGAGT GCCTCCGGAGAGCATGGAATTTCTCCAGAGGCAAGGCCCCATGCAGCTCC TGGTCTGCGATGCGCTGACGAGGTCCCAGAAGCACCCGACGCACTTCAGG TACGTTCGCCGCATGGTGCTTGGGTTTGCTTCGTGTGGATTCGTTTGCTT GCACATCGCGAGATGGTGCTTGAGAAGGTTCGGGTTGATGCTTCTGCGAC GCAAGTGTGCGTCGCGACATACCTGCGTCGACAGGACAGGCGAGTGTGGG CGGAGTCTGCGAGTACGCTTTGTCTTGGCACAGGGAGTCAACAGGCGGCT TGACGGGTTTTGTCCTGAAACCTTCTGGGTCAGCAAGAAGCAACCCACGC TCTGCTTGTGCCCGCCACAGGCTCCGGCGGGGCAGGTGTTGAAATCCGCA TAATTCTGTGGAATCCTCCATCAAATACATATGAGCACCTTTATGGTTCG TTTTTCCAGTTTATCCTGCGAATGCTGACAATCCAGCAACCAGCTCGCGT AGTGCAGCAGTAGCGCCGAGCGGGTGACGCTGTCAGTTCGCTCTTGCTAG ATACACTGCCGAACCTGCCGAATCGGCGACCCCTTATTGATTTTCAACCT TGCGCCAGAAAACCTCTCCCGAGATCCTCTGTTTAGTGTTTGTGTTTTGG TATTAGCTCACGAACACCAACTCGCAGAACGCGTTGTAGCCTTTTCGGAG GACAGTGTCGACCCCTAGCGTCTTGCAGCAACGCCTGTCCAGGCGTAAAG CAGGGTTGGCTTGGGCGGGCACAGGCGTCCATCCGTGAGACGAAAACCCA AGCACACACGTTCCCATGTCGACCGTGCTTCCGAACACCACCCGTGAGTT TGCGCTGCCTCGGTCGAAGTATGGGAACATATGTCCCCCTGAAACAATCA TCTCTCTCTCCCCGCCATCTACCCCTTGCGGCCTGTTGGGCCGCTGTATC CTCCTGAAATACTCCACCATCGCATCGAATTGGATGCATTCACGATGCTG CTGATATAACGCATGGCCCGTCGTGTCACCCGACCAGAGCCTGAGGTGTA AACTCTCTGCCCCCGCGATCCAACTGGTTTTGCGTGATTAACACGAAGTG GTTCGGCCTCGCCAACATGCCAGCCGATATCAACTCCCCCCATGATGACC CCAACACCTCTACATCGTCCCCACGGATTGAACCGATCGAACGATGTCAG CGTCGAAGACAGCGTCGTCTTGGCAGGACAGCTCAAGGCGCGGAGGACCC TGTTGGTGGGGCTGGGGAGCGACATCGAGTACCACGCAACGAACGCTTTG CTGGCGTCTCGAGAGGAAGCGTCGCCGGACATGCCGCACGTCAGGCTCGC ATACGACGGCCTGGCTGTCGACGTTGACTTGTAAGAGGGGACGTCATTCC AGCACACAGATTTGGAGTGTGGGGTTTTGCGGCAGCGCTGAGAAGCAGAG CCAAAGAGTCTCCTTTGAAGTGCTCAAAAAAGAGGTATCTTTGTGGATCC ACTCGGATTCGCCCCCTCCTGTGTGACCCCGGTTGGTTCAGATGGACACA ATATCCTCATCAGCCGAGCGAGACTTACCTTTCTTTTCCC
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Coding sequence (CDS) from alignment at S-firma_F_contig10145:2..3691+

>mRNA_S-firma_F_contig10145.247.1 ID=mRNA_S-firma_F_contig10145.247.1|Name=mRNA_S-firma_F_contig10145.247.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1212bp|location=Sequence derived from alignment at S-firma_F_contig10145:2..3691+ (Sphaerotrichia firma ET2_F female)
ATGCTCGGACTGGACGATGTCAGAAGCGTACAGATGCTCGGACTGGACGA
TGTCAGAAGCGTACAGGCTCCAAGAAAGGAAAGAGCTTCCACGCCCGTGT
TTGTGTCCGAGCAGACCGACCGATCGGTGAGGAGGCTCCAAGAAAGGAAA
GAGCTTCCACGCCCGTGTTTGTGTCCGAGCAGACCGACCGATCGGTGAGG
AGGGTTTTCCCTTACCTGGTGGGGCGTGAGGATGACAACGGGAGAGGTGG
GCGCTACGTGGCGGCCTTGAAGTTCAACGCCTTCCAAGACTTCGAGCCGT
TCGAGGGTTTTCCCTTACCTGGTGGGGCGTGAGGATGACAACGGGAGAGG
TGGGCGCTACGTGGCGGCCTTGAAGTTCAACGCCTTCCAAGACTTCGAGC
CGTTCGAGGTCGGCGGGCTCGAAGTGACCCCCTTTCCGGTGCTGCACGGG
GAGGACTACGTCTCCCACGGCTTTCTCTTCGGCCCCGAGAGAAACAAGGT
TTGCTACATCTCGGACGTCAGCCGAGTGCCTCCGGAGAGCATGGAATTTC
TCCAGAGGCAAGGCCCCATGCAGCTCCTGGTCTGCGATGCGCTGACGAGG
TCCCAGAAGCACCCGACGCACTTCAGGTCGGCGGGCTCGAAGTGACCCCC
TTTCCGGTGCTGCACGGGGAGGACTACGTCTCCCACGGCTTTCTCTTCGG
CCCCGAGAGAAACAAGGTTTGCTACATCTCGGACGTCAGCCGAGTGCCTC
CGGAGAGCATGGAATTTCTCCAGAGGCAAGGCCCCATGCAGCTCCTGGTC
TGCGATGCGCTGACGAGGTCCCAGAAGCACCCGACGCACTTCAGCGTCGA
AGACAGCGTCGTCTTGGCAGGACAGCTCAAGGCGCGGAGGACCCTGTTGG
TGGGGCTGGGGAGCGACATCGAGTACCACGCAACGAACGCTTTGCTGGCG
TCTCGAGAGGAAGCGTCGCCGGACATGCCGCACGTCAGGCTCGCATACGA
CGGCCTGGCTGTCGACGTTGACTTGTAACGTCGAAGACAGCGTCGTCTTG
GCAGGACAGCTCAAGGCGCGGAGGACCCTGTTGGTGGGGCTGGGGAGCGA
CATCGAGTACCACGCAACGAACGCTTTGCTGGCGTCTCGAGAGGAAGCGT
CGCCGGACATGCCGCACGTCAGGCTCGCATACGACGGCCTGGCTGTCGAC
GTTGACTTGTAA
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