mRNA_S-firma_F_contig10143.245.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10143.245.1
Unique NamemRNA_S-firma_F_contig10143.245.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10143.245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10143contigS-firma_F_contig10143:3647..4164 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LCN7
Max annot lvl2759|Eukaryota
Evalue9.18e-13
EggNOG OGs2D2W6@1|root,2SP8K@2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815542.4123566-CDS-S-firma_F_contig10143:3646..37751622815542.4123566-CDS-S-firma_F_contig10143:3646..3775Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10143 3647..3775 -
1696949403.4763384-CDS-S-firma_F_contig10143:3646..37751696949403.4763384-CDS-S-firma_F_contig10143:3646..3775Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10143 3647..3775 -
1622815542.4232657-CDS-S-firma_F_contig10143:3981..41641622815542.4232657-CDS-S-firma_F_contig10143:3981..4164Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10143 3982..4164 -
1696949403.4899945-CDS-S-firma_F_contig10143:3981..41641696949403.4899945-CDS-S-firma_F_contig10143:3981..4164Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10143 3982..4164 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10143.245.1prot_S-firma_F_contig10143.245.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10143 3647..4164 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10143.245.1

>prot_S-firma_F_contig10143.245.1 ID=prot_S-firma_F_contig10143.245.1|Name=mRNA_S-firma_F_contig10143.245.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=104bp
CPVIAVCRDACNGECTDDETCVLNKDVMCIQAPCPPIPECVKDTTTDPCD
GRCGKFQVHAVQADSKVWYCADFCDPARCEDHEVCELLPTPCAGPPCPME
AVCR
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mRNA from alignment at S-firma_F_contig10143:3647..4164-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10143.245.1 ID=mRNA_S-firma_F_contig10143.245.1|Name=mRNA_S-firma_F_contig10143.245.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=518bp|location=Sequence derived from alignment at S-firma_F_contig10143:3647..4164- (Sphaerotrichia firma ET2_F female)
TGCCCGGTCATCGCCGTTTGCCGCGACGCCTGCAACGGCGAGTGTACGGA
TGACGAAACTTGCGTTCTCAACAAGGATGTCATGTGCATCCAGGCTCCGT
GCCCGCCAATCCCCGAATGCGTGAAAGACACCACCACAGATCCGTGCGAC
GGACGCTGCGGGAAATTCCAGGTACATGCCGTCGTGTCCGACTAGTCTAG
ACGATACATCTGCTGACTGATTCTTACTGGAAGGTCGAATCAAAGCCCGC
CTAAGGTTATACTCGCCGAAGGTGTGAATCATGTACCTCGGTCGACATGT
AATGTGAAAAAGTCGTCCTTCCTTTTCAACCACAGGAATGCCTTGCTTTC
GACGGCGAATTAGGGCCTTCGCTGCTGGGCCCGGACGAGCAAGCTGATTC
GAAGGTCTGGTATTGTGCTGACTTCTGCGACCCGGCCCGCTGCGAAGACC
ACGAGGTGTGCGAGCTACTACCAACCCCCTGTGCCGGCCCACCGTGCCCT
ATGGAGGCCGTTTGCCGA
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Coding sequence (CDS) from alignment at S-firma_F_contig10143:3647..4164-

>mRNA_S-firma_F_contig10143.245.1 ID=mRNA_S-firma_F_contig10143.245.1|Name=mRNA_S-firma_F_contig10143.245.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=624bp|location=Sequence derived from alignment at S-firma_F_contig10143:3647..4164- (Sphaerotrichia firma ET2_F female)
TGCCCGGTCATCGCCGTTTGCCGCGACGCCTGCAACGGCGAGTGTACGGA
TGACGAAACTTGCGTTCTCAACAAGGATGTCATGTGCATCCAGGCTCCGT
GCCCGCCAATCCCCGAATGCGTGAAAGACACCACCACAGATCCGTGCGAC
GGACGCTGCGGGAAATTCCAGGTACATGCCGTCTGCCCGGTCATCGCCGT
TTGCCGCGACGCCTGCAACGGCGAGTGTACGGATGACGAAACTTGCGTTC
TCAACAAGGATGTCATGTGCATCCAGGCTCCGTGCCCGCCAATCCCCGAA
TGCGTGAAAGACACCACCACAGATCCGTGCGACGGACGCTGCGGGAAATT
CCAGGTACATGCCGTCCAAGCTGATTCGAAGGTCTGGTATTGTGCTGACT
TCTGCGACCCGGCCCGCTGCGAAGACCACGAGGTGTGCGAGCTACTACCA
ACCCCCTGTGCCGGCCCACCGTGCCCTATGGAGGCCGTTTGCCGACAAGC
TGATTCGAAGGTCTGGTATTGTGCTGACTTCTGCGACCCGGCCCGCTGCG
AAGACCACGAGGTGTGCGAGCTACTACCAACCCCCTGTGCCGGCCCACCG
TGCCCTATGGAGGCCGTTTGCCGA
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