mRNA_S-firma_F_contig10143.244.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10143.244.1
Unique NamemRNA_S-firma_F_contig10143.244.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10143.244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10143contigS-firma_F_contig10143:105..775 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size671
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10143.244.1prot_S-firma_F_contig10143.244.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10143 113..487 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815542.3331287-UTR-S-firma_F_contig10143:104..1121622815542.3331287-UTR-S-firma_F_contig10143:104..112Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10143 105..112 +
1696949403.4504247-UTR-S-firma_F_contig10143:104..1121696949403.4504247-UTR-S-firma_F_contig10143:104..112Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10143 105..112 +
1622815542.3720129-UTR-S-firma_F_contig10143:487..7751622815542.3720129-UTR-S-firma_F_contig10143:487..775Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10143 488..775 +
1696949403.466165-UTR-S-firma_F_contig10143:487..7751696949403.466165-UTR-S-firma_F_contig10143:487..775Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10143 488..775 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815542.35804-CDS-S-firma_F_contig10143:112..4871622815542.35804-CDS-S-firma_F_contig10143:112..487Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10143 113..487 +
1696949403.4582982-CDS-S-firma_F_contig10143:112..4871696949403.4582982-CDS-S-firma_F_contig10143:112..487Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10143 113..487 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10143.244.1

>prot_S-firma_F_contig10143.244.1 ID=prot_S-firma_F_contig10143.244.1|Name=mRNA_S-firma_F_contig10143.244.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=125bp
MFSGSLSPCQRGLMRSLVGSAHIPLPGPKYAFCVNISAMYARPRIHSTDH
RYTNRASCCFDMWVGGLDGWMESSCVDIVVSMELAGTERSHKNKWVSRGT
VTSMDCCTPNQEQATVEGKCLLTT*
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mRNA from alignment at S-firma_F_contig10143:105..775+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10143.244.1 ID=mRNA_S-firma_F_contig10143.244.1|Name=mRNA_S-firma_F_contig10143.244.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=671bp|location=Sequence derived from alignment at S-firma_F_contig10143:105..775+ (Sphaerotrichia firma ET2_F female)
ATTCTTGCATGTTTTCGGGATCTCTGTCGCCTTGTCAGCGTGGGTTGATG
CGATCCCTCGTGGGAAGCGCGCACATCCCTCTCCCCGGTCCCAAGTATGC
ATTCTGCGTGAATATCAGTGCTATGTACGCGAGACCCCGGATACATTCGA
CAGACCATAGGTACACAAACCGTGCCTCGTGCTGCTTTGACATGTGGGTA
GGCGGTCTCGACGGTTGGATGGAATCTTCGTGTGTTGACATAGTCGTCTC
CATGGAACTGGCTGGCACGGAACGAAGTCACAAAAACAAATGGGTTAGCC
GGGGGACTGTGACGTCGATGGATTGTTGTACACCGAACCAAGAACAAGCG
ACCGTGGAAGGAAAGTGTTTGTTGACGACATGATACGGAAACGCAACCGT
TCATCCTTGGTTTTTTCTGTTCCTCATCTGATTGCGGTTTCCTCTCGCCA
GACGGCTAAATTGATGCATTGTTTTTTTCTTTTAGTTTTTTGTTTTTTGT
GGTGTGAACAAGTCGGGTGCGAGGAAGCGAGAATGGGTCGGAGCCAAACG
CTGAATGTTGTGCTGTGGGCTGCGTACAAAAAAAATACCCCCCCTAAGGT
TGTAGACTAATGGTTCGTAATGATGGTGGCAGAGAGCGTTCTTTTCAACG
TGTCTGCGCCTTGGTGCTAGC
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Coding sequence (CDS) from alignment at S-firma_F_contig10143:105..775+

>mRNA_S-firma_F_contig10143.244.1 ID=mRNA_S-firma_F_contig10143.244.1|Name=mRNA_S-firma_F_contig10143.244.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=750bp|location=Sequence derived from alignment at S-firma_F_contig10143:105..775+ (Sphaerotrichia firma ET2_F female)
ATGTTTTCGGGATCTCTGTCGCCTTGTCAGCGTGGGTTGATGCGATCCCT
CGTGGGAAGCGCGCACATCCCTCTCCCCGGTCCCAAGTATGCATTCTGCG
TGAATATCAGTGCTATGTACGCGAGACCCCGGATACATTCGACAGACCAT
AGGTACACAAACCGTGCCTCGTGCTGCTTTGACATGTGGGTAGGCGGTCT
CGACGGTTGGATGGAATCTTCGTGTGTTGACATAGTCGTCTCCATGGAAC
TGGCTGGCACGGAACGAAGTCACAAAAACAAATGGGTTAGCCGGGGGACT
GTGACGTCGATGGATTGTTGTACACCGAACCAAGAACAAGCGACCGTGGA
AGGAAAGTGTTTGTTGACGACATGAATGTTTTCGGGATCTCTGTCGCCTT
GTCAGCGTGGGTTGATGCGATCCCTCGTGGGAAGCGCGCACATCCCTCTC
CCCGGTCCCAAGTATGCATTCTGCGTGAATATCAGTGCTATGTACGCGAG
ACCCCGGATACATTCGACAGACCATAGGTACACAAACCGTGCCTCGTGCT
GCTTTGACATGTGGGTAGGCGGTCTCGACGGTTGGATGGAATCTTCGTGT
GTTGACATAGTCGTCTCCATGGAACTGGCTGGCACGGAACGAAGTCACAA
AAACAAATGGGTTAGCCGGGGGACTGTGACGTCGATGGATTGTTGTACAC
CGAACCAAGAACAAGCGACCGTGGAAGGAAAGTGTTTGTTGACGACATGA
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