mRNA_S-firma_F_contig10136.235.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10136.235.1 vs. uniprot
Match: A0A1Q9EL08_SYMMI (E3 ubiquitin-protein ligase RNF14 n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9EL08_SYMMI) HSP 1 Score: 114 bits (286), Expect = 6.310e-26 Identity = 72/207 (34.78%), Postives = 95/207 (45.89%), Query Frame = 1
Query: 16 CAICMTAHAVSTMMSLECDHRFCFDCMRSYVDAKIMVGQVRDEQLGCPTPGCRQPLTPYEVEGCTTPDMHAKYLYFRTKA----ALDTEQFCACPKGCGEYMERAAGDGTQFVNCSNAQCRFQFCAKCLQAAHLTTTCEEAAAMRAPAGDDHDKLFVRRMLDEGNRRCPSCGVWCEKRLDDGGCDHMSC--PMCK--TDFCYVCGVQ 612
C +C+ + + L+CDHR C C RSYV KI GQV +L CP P C +T +VEG T + K+L FR + A D +++ A G FV C +C +FC +C H +CEE A R DK F M E RRCP CG D GC+ M C +C+ T +CYVCG +
Sbjct: 166 CPVCLDQVELDGSIQLDCDHRLCDSCFRSYVALKIREGQVASHELSCPLPDCGVEVTVAQVEGATDAKLFEKFLQFRMELWNPPAADGHMVXXXXXXXXKFLVAA---GVSFVRCP--RCAKEFCPRCRHNKHDGVSCEEIQAWRRE-NLQADKNFEELMAREHWRRCPRCGA---PSARDSGCNFMQCRSAVCRKSTFWCYVCGRE 363
BLAST of mRNA_S-firma_F_contig10136.235.1 vs. uniprot
Match: A0A0G4EMI5_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EMI5_VITBC) HSP 1 Score: 110 bits (276), Expect = 5.630e-25 Identity = 76/215 (35.35%), Postives = 99/215 (46.05%), Query Frame = 1
Query: 7 QQECAICMTAHAVSTMMSLECDHRFCFDCMRSYVDAKIMVGQVRDEQLGCP-----TPGCRQPLTPYEVEGCTTPDMHAKYLYFRTKAAL--DTEQFCACPK-GCGEYMERAAGDGTQFVNCSNAQCRFQFCAKCLQAAHLTTTCEEAAAMRAPAGDDHDKLFVRRMLDEGNRRCPSCGVWCEKRLDDGGCDHMSCP--MCKTD---FCYVCGVQ 612
Q EC +C + + LEC HR C DC YV +K+ G+V L CP C+Q L+ ++ G + + K+L FR + D E CP C Y+ V C AQC +FC CL+ AH +TCEE + D F R EG RRCP CGV CEK GC+ M+C CK + FCY+CG Q
Sbjct: 60 QFECMVCKDSCEIHGSYELECGHRLCSDCFVGYVKSKVDGGRVSANDLRCPHVDEQNNQCQQELSYDQIVGVLSEEDKQKFLRFRLEQYQPGDNEMKVTCPSPDCVTYIIDKTATS---VKC--AQCGRKFCPHCLEEAHEGSTCEEYRRWKEE-NSQGDGAFNRLAEREGFRRCPVCGVMCEKVR---GCNFMTCESIQCKANRVHFCYICGQQ 265
BLAST of mRNA_S-firma_F_contig10136.235.1 vs. uniprot
Match: A0A1R2APQ9_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2APQ9_9CILI) HSP 1 Score: 108 bits (271), Expect = 1.760e-24 Identity = 66/208 (31.73%), Postives = 101/208 (48.56%), Query Frame = 1
Query: 16 CAICMTAHAVSTMMSLECDHRFCFDCMRSYVDAKIMVGQVRDEQLGCPTPGCRQPLTPYEVEGCTTPDMHAKYLYFRTKAAL-----DTEQFCACPKGCGEYMERAAGDGTQFVNCSNAQCRFQFCAKCLQAAHLTTTCEEAAAMRAPAGDDHDKLFVRRMLDEGNRRCPSCGVWCEKRLDDGGCDHMSCPMC----KTDFCYVCGVQ 612
C IC+ + V ++L CDHRFC +C+R ++ I QV D+ L CP C +P+T YE+E P++ KY FR ++ D E CP EY+ +F C +C+ + C C + +H ++C+E + + DKLF + + EG RCP C ++ GC +M C KT FCY CG++
Sbjct: 161 CEICLMDYNVEQGITLNCDHRFCEECLRQHISMLIDTAQVTDDVLKCPK--CPEPITVYEIEDVAGPELFKKYEKFRLRSMKIEELDDNEVLFHCPGNDCEYICIVEKGENEF-ECP--KCKHKCCPLCKEDSHKGSSCDEYKQWKKE-NSEVDKLFDQLLEKEGLLRCPECEAVVQRI---SGCQYMVCSSSECRGKTFFCYECGIK 359
BLAST of mRNA_S-firma_F_contig10136.235.1 vs. uniprot
Match: A0A1R2B1F7_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2B1F7_9CILI) HSP 1 Score: 107 bits (267), Expect = 6.140e-24 Identity = 64/208 (30.77%), Postives = 99/208 (47.60%), Query Frame = 1
Query: 16 CAICMTAHAVSTMMSLECDHRFCFDCMRSYVDAKIMVGQVRDEQLGCPTPGCRQPLTPYEVEGCTTPDMHAKYLYFRTKAAL-----DTEQFCACPKGCGEYMERAAGDGTQFVNCSNAQCRFQFCAKCLQAAHLTTTCEEAAAMRAPAGDDHDKLFVRRMLDEGNRRCPSCGVWCEKRLDDGGCDHMSCPMC----KTDFCYVCGVQ 612
C IC + + ++L CDHRFC +C+R ++ I QV D+ L CP C +P++ YE+E P++ KY FR ++ D E CP EY+ F C +C+ + C C + +H ++C+E + + DKLF + + EG RCP C ++ GC +M C KT FCY CG++
Sbjct: 161 CEICFMEYNIEQGITLNCDHRFCEECLRQHISMLIDTAQVTDDMLKCPK--CPEPISVYEIEDVAGPELFKKYEKFRLRSMKIDELDDNEILFHCPGNDCEYICIVEKSDNNF-ECP--KCKHKCCPLCKEDSHKNSSCDEYKQWKKE-NSEVDKLFNQLLEKEGLLRCPECEAVVQRI---SGCQYMVCSSSECRGKTFFCYDCGIK 359
BLAST of mRNA_S-firma_F_contig10136.235.1 vs. uniprot
Match: A0DM54_PARTE (Uncharacterized protein n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0DM54_PARTE) HSP 1 Score: 102 bits (255), Expect = 2.770e-22 Identity = 69/203 (33.99%), Postives = 102/203 (50.25%), Query Frame = 1
Query: 13 ECAICMTAHAVST-MMSLECDHRFCFDCMRSYVDAKIMVGQVRDEQLGCPTPGCRQPLTPYEVEGCTTPDMHAKYLYFRTK-AALDT--EQFCACP-KGC-GEYMERAAGDGTQFVNCSNAQCRFQFCAKCLQAAHLTTTCEEAAAMRAPAGDDHDKLFVRRMLDEGNRRCPSCGVWCEKRLDDGGCDHMSCPMCKTDFCYVC 603
+CAIC + + ++L+CDHRFC C++ + ++ +G ++ L CP C P+ Y ++ CT PD+ AK RT+ +D+ E+ CP +GC Y+ +F C+N C+ QFCA AH TCE+ K R ++G CP C V K DGGC+HM+C CK +FCYVC
Sbjct: 194 DCAICFENYDLEQEAITLDCDHRFCRQCIKEQIYNQMDLGNFKESDLVCPL--CNHPINFYIIQNCT-PDVSAKINDLRTQNLKIDSKYEKVVVCPGRGCPASYIISIY---LEFPTCTN--CKLQFCANGCDKAHQGMTCEQF------------KQKTRAKQEKGLVNCPKCKVQIFK---DGGCNHMTC-RCKHEFCYVC 372
BLAST of mRNA_S-firma_F_contig10136.235.1 vs. uniprot
Match: A0A7S0A2L8_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0A2L8_9DINO) HSP 1 Score: 102 bits (253), Expect = 3.030e-22 Identity = 67/209 (32.06%), Postives = 99/209 (47.37%), Query Frame = 1
Query: 16 CAICMTAHAVSTMMSLECDHRFCFDCMRSYVDAKIMVGQVRDEQLGCPTPGCRQPLTPYEVEGCTTPD-MHAKYLYFRTK----AALDTEQFCACPK-GCGEYMERAAGDGTQFVNCSNAQCRFQFCAKCLQAAHLTTTCEEAAAMRAPAGDDHDKLFVRRMLDEGNRRCPSCGVWCEKRLDDGGCDHMSC--PMCK--TDFCYVCGVQ 612
C +C + + L+C HR C +C RSY++ KI +V E+L CP P C + +T +VEG T + ++L R + + D E CP GCG V C +CR +C C +A H +TCE A R D+ ++ F M E +RCP C CE++ GC+ M+C C+ FCY+CG +
Sbjct: 74 CPLCFDTASFDDSVELDCLHRLCTECFRSYLEVKIREKRVAPEELCCPMPDCGREVTVPQVEGVTKGSPLWDRFLASRAELWQPGSQDGELLNECPMPGCGARFLTPTAARNPRVKCP--ECRAVYCRNC-RADHAGSTCEAYRAWRRE-NDNAEREFDELMRRERWQRCPQCKAACERQQ---GCNFMTCHSTQCRGRVHFCYLCGAE 275
BLAST of mRNA_S-firma_F_contig10136.235.1 vs. uniprot
Match: UPI001886D601 (E3 ubiquitin-protein ligase RNF19A-like isoform X1 n=3 Tax=Rhipicephalinae TaxID=426437 RepID=UPI001886D601) HSP 1 Score: 100 bits (248), Expect = 6.690e-21 Identity = 68/209 (32.54%), Postives = 96/209 (45.93%), Query Frame = 1
Query: 13 ECAICMTAHAVSTMMSL-ECDHRFCFDCMRSYVDAKIMVGQVRDEQLGCPTPGCRQPLTPYEVEGCTTPD-MHAKYLYFRTKAALDTE---QFCACPKGCGEYMERAAGDGTQFVNCSNAQCRFQFCAKCLQAAHLTTTCEEAAAMRA--PAGDDHDKLFVRRMLDEGNRR-----CPSCGVWCEKRLDDGGCDHMSCPMCKTDFCYVC 603
EC +C+ L C HR C DC+R Y+ +I +V + CP C +P+ P ++ + M AKY F + L TE ++C P CG + + + C C FC C Q H TC+ A A RA PA L DEG +R CP C V+ K +DDG C+HM+C +C T+FC++C
Sbjct: 112 ECPLCLLEAPAEAFPRLASCTHRACADCLRQYLRVEISESRVN---IACPA--CSEPMHPSDIRRLLQDELMVAKYESFMLRRVLVTEPDARWCPAPD-CGYVVIASGCASCPKLRCERPGCSTAFCYHCKQEWHPNQTCDAARAQRASRPAAQAGSTLGFPH--DEGLQRDDIKHCPCCKVFIIK-MDDGSCNHMTCRLCGTEFCWLC 311
BLAST of mRNA_S-firma_F_contig10136.235.1 vs. uniprot
Match: A0A131YJC8_RHIAP (RBR-type E3 ubiquitin transferase n=3 Tax=Rhipicephalus TaxID=426455 RepID=A0A131YJC8_RHIAP) HSP 1 Score: 99.8 bits (247), Expect = 9.060e-21 Identity = 68/209 (32.54%), Postives = 96/209 (45.93%), Query Frame = 1
Query: 13 ECAICMTAHAVSTMMSL-ECDHRFCFDCMRSYVDAKIMVGQVRDEQLGCPTPGCRQPLTPYEVEGCTTPD-MHAKYLYFRTKAALDTE---QFCACPKGCGEYMERAAGDGTQFVNCSNAQCRFQFCAKCLQAAHLTTTCEEAAAMRA--PAGDDHDKLFVRRMLDEGNRR-----CPSCGVWCEKRLDDGGCDHMSCPMCKTDFCYVC 603
EC +C+ L C HR C DC+R Y+ +I +V + CP C +P+ P ++ + M AKY F + L TE ++C P CG + + + C C FC C Q H TC+ A A RA PA L DEG +R CP C V+ K +DDG C+HM+C +C T+FC++C
Sbjct: 112 ECPLCLLEAPAEAFPRLASCAHRACADCLRQYLRVEISESRVN---IACPA--CSEPMHPSDIRRLLQDELMVAKYESFMLRRVLVTEPDARWCPAPD-CGYVVIASGCASCPKLRCERPGCSTAFCYHCKQEWHPNQTCDAARAQRASRPAAQAGSTLGFPH--DEGLQRDDIKHCPCCKVFIIK-MDDGSCNHMTCRLCGTEFCWLC 311
BLAST of mRNA_S-firma_F_contig10136.235.1 vs. uniprot
Match: A0A820CLA1_9BILA (RBR-type E3 ubiquitin transferase n=5 Tax=Rotaria socialis TaxID=392032 RepID=A0A820CLA1_9BILA) HSP 1 Score: 97.4 bits (241), Expect = 6.410e-20 Identity = 56/190 (29.47%), Postives = 90/190 (47.37%), Query Frame = 1
Query: 67 CDHRFCFDCMRSYVDAKIMVGQVRDEQLGCPTPGCRQPLTPYEVEGC--TTPDMHAKYLYFRTKAALDT---EQFCACPKGCGEYMERAAGDGTQFVNCSNAQCRFQFCAKCLQAAHLTTTCEEAAAMRAPA---GDDHDKLFVRRMLDEGNRRCPSCGVWCEKRLDDGGCDHMSCPMCKTDFCYVCGVQ 612
C H +C C+RSY+ +I G++ L CP C + + P ++ PD+ +KY F + L + ++C P CG + + + C C FC C A H TCE+AA + + L + DE ++CP C K +DDG C+HM+CP+C+ +FC++CG +
Sbjct: 191 CSHSYCRTCLRSYLRLEITEGRIT---LNCPQNDCPERIHPCDISRILENNPDLISKYEQFMVRRVLQSITDTRWCPAPD-CGFALIASGYASCPEIQCLRPGCNTSFCYHCKAAWHPNKTCEDAAREKTSSKIRSGSFISLASAQQKDE-IKQCPRCQASIVK-MDDGSCNHMTCPICEAEFCWLCGRE 374
BLAST of mRNA_S-firma_F_contig10136.235.1 vs. uniprot
Match: A0A815CSL2_ADIRI (RBR-type E3 ubiquitin transferase n=3 Tax=Adineta ricciae TaxID=249248 RepID=A0A815CSL2_ADIRI) HSP 1 Score: 97.1 bits (240), Expect = 8.030e-20 Identity = 59/211 (27.96%), Postives = 96/211 (45.50%), Query Frame = 1
Query: 10 QECAICMTAHAVSTMMSLE-CDHRFCFDCMRSYVDAKIMVGQVRDEQLGCPTPGCRQPLTPYEVEGC--TTPDMHAKYLYFRTKAALDT---EQFCACPKGCGEYMERAAGDGTQFVNCSNAQCRFQFCAKCLQAAHLTTTCEEAAAMRAP----AGDDHDKLFVRRMLDEGNRRCPSCGVWCEKRLDDGGCDHMSCPMCKTDFCYVCGVQ 612
+ C +C ++ L C H +C C++SY+ +I G+V L CP C + + P ++ PD+ +KY F + L + ++C P CG + A + C C FC C H TCE+AA + +G + DE ++CP C K +DDG C+HM+CP+C+ +FC++CG +
Sbjct: 180 ETCLLCCHEYSSEHFEQLSLCSHSYCRTCLKSYLKLEITEGRVT---LNCPQNDCPERIHPSDISRILQNQPDLISKYEQFMVRRVLQSIADTRWCPAPD-CGFAVIAAGYASCPEIQCLRPGCNTSFCYHCKATWHPNKTCEDAARQKTSRKLRSGSFISLASAAQQKDE-IKQCPRCEASILK-MDDGSCNHMTCPICEAEFCWLCGRE 384 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10136.235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10136.235.1 >prot_S-firma_F_contig10136.235.1 ID=prot_S-firma_F_contig10136.235.1|Name=mRNA_S-firma_F_contig10136.235.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=195bp MTAHAVSTMMSLECDHRFCFDCMRSYVDAKIMVGQVRDEQLGCPTPGCRQback to top mRNA from alignment at S-firma_F_contig10136:1508..2184+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10136.235.1 ID=mRNA_S-firma_F_contig10136.235.1|Name=mRNA_S-firma_F_contig10136.235.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=677bp|location=Sequence derived from alignment at S-firma_F_contig10136:1508..2184+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10136:1508..2184+ >mRNA_S-firma_F_contig10136.235.1 ID=mRNA_S-firma_F_contig10136.235.1|Name=mRNA_S-firma_F_contig10136.235.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1170bp|location=Sequence derived from alignment at S-firma_F_contig10136:1508..2184+ (Sphaerotrichia firma ET2_F female)back to top |