mRNA_S-firma_F_contig10132.232.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10132.232.1
Unique NamemRNA_S-firma_F_contig10132.232.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10132.232.1 vs. uniprot
Match: D7FTH1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTH1_ECTSI)

HSP 1 Score: 181 bits (459), Expect = 5.180e-45
Identity = 93/116 (80.17%), Postives = 102/116 (87.93%), Query Frame = 1 
Query:    1 NNFTFEATIANECYGDDCVVEGEGNVGSLDGQQPIEVIIETSTDVKFQDMRVQSVNDPVMTVSGSTGVSFDNCGFSKVESGTCVIQVLDADSTVVTGGDPELSLQDTPEGPCWVKV 348
            NNFTFEATIA+EC+ DDCV+EGEGNVGSLDGQQPIEVI+E+ST VKFQDM+VQSVNDPVMTVSGS+GVSFDNCGFS VESGTCVIQ  DA S V TG DPELSL    +G C+VKV
Sbjct: 1039 NNFTFEATIADECWTDDCVLEGEGNVGSLDGQQPIEVIVESSTLVKFQDMKVQSVNDPVMTVSGSSGVSFDNCGFSNVESGTCVIQT-DATSEVTTGDDPELSL----DGTCYVKV 1149
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BLAST of mRNA_S-firma_F_contig10132.232.1 vs. uniprot
Match: A0A6H5KH45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH45_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 6.710e-43
Identity = 87/116 (75.00%), Postives = 101/116 (87.07%), Query Frame = 1 
Query:    1 NNFTFEATIANECYGDDCVVEGEGNVGSLDGQQPIEVIIETSTDVKFQDMRVQSVNDPVMTVSGSTGVSFDNCGFSKVESGTCVIQVLDADSTVVTGGDPELSLQDTPEGPCWVKV 348
            NNFTFEATIA++C+G+DCV+EGEGNVGSLDGQQPIEV++E+ST VKFQDM+VQSVNDPV+ VSGS+GVSFDNCGFS VE+GTCVIQ  D  S V TG DPELSL    +G C+VKV
Sbjct:  854 NNFTFEATIADKCWGEDCVLEGEGNVGSLDGQQPIEVVVESSTLVKFQDMKVQSVNDPVIVVSGSSGVSFDNCGFSNVETGTCVIQT-DTTSEVTTGDDPELSL----DGTCYVKV 964
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BLAST of mRNA_S-firma_F_contig10132.232.1 vs. uniprot
Match: A0A6H5KFA6_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFA6_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 1.770e-26
Identity = 70/116 (60.34%), Postives = 82/116 (70.69%), Query Frame = 1 
Query:    1 NNFTFEATIANECYGDDCVVEGEGNVGSLDGQQPIEVIIETSTDVKFQDMRVQSVNDPVMTVSGSTGVSFDNCGFSKVESGTCVIQVLDADSTVVTGGDPELSLQDTPEGPCWVKV 348
            NNFTFEATIA+E        EGEGNVGS+DGQQPIEVI+ TS+ V FQDM+VQSVNDPVMT++ ST VSF N G+S V SGTC IQ  D  +  +   + EL L    EG C+VKV
Sbjct: 1056 NNFTFEATIASEEGS-----EGEGNVGSVDGQQPIEVIVGTSSLVTFQDMKVQSVNDPVMTITDSTTVSFTNGGYSNVPSGTCTIQTDDPSTVTIDADEDELVL----EGTCYVKV 1162
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BLAST of mRNA_S-firma_F_contig10132.232.1 vs. uniprot
Match: A0A6H5KL74_9PHAE (F5/8 type C domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL74_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 7.390e-23
Identity = 63/116 (54.31%), Postives = 78/116 (67.24%), Query Frame = 1 
Query:    1 NNFTFEATIANECYGDDCVVEGEGNVGSLDGQQPIEVIIETSTDVKFQDMRVQSVNDPVMTVSGSTGVSFDNCGFSKVESGTCVIQVLDADSTVVTGGDPELSLQDTPEGPCWVKV 348
            NNFTF+ATI  E         GEGNVG+LDGQQPI+VIIE+ST V F D+RVQS NDP+M VS S+ VSF+N G S VE+  CVIQ  D  +  +   + EL+L    +G C+VKV
Sbjct: 1049 NNFTFDATIGEES------TVGEGNVGNLDGQQPIDVIIESSTLVTFNDLRVQSSNDPIMMVSDSSTVSFNNLGLSLVEADACVIQADDPSTVTIDADEDELTL----DGSCYVKV 1154
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BLAST of mRNA_S-firma_F_contig10132.232.1 vs. uniprot
Match: D7FUI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUI8_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 6.640e-22
Identity = 58/96 (60.42%), Postives = 69/96 (71.88%), Query Frame = 1 
Query:   61 EGEGNVGSLDGQQPIEVIIETSTDVKFQDMRVQSVNDPVMTVSGSTGVSFDNCGFSKVESGTCVIQVLDADSTVVTGGDPELSLQDTPEGPCWVKV 348
            EG GNVGS+DGQQPIEVI+E+S+ VKFQD  VQSVNDPVMT++ ST VSF N G+S V SGTC IQ  D  +  +   + EL L    EG C+VKV
Sbjct:  404 EGAGNVGSVDGQQPIEVIVESSSLVKFQDKPVQSVNDPVMTITDSTTVSFTNGGYSNVPSGTCTIQADDPSTVTIDADEDELVL----EGTCYVKV 495
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BLAST of mRNA_S-firma_F_contig10132.232.1 vs. uniprot
Match: D7FZZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZZ4_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 1.020e-17
Identity = 53/97 (54.64%), Postives = 66/97 (68.04%), Query Frame = 1 
Query:   58 VEGEGNVGSLDGQQPIEVIIETSTDVKFQDMRVQSVNDPVMTVSGSTGVSFDNCGFSKVESGTCVIQVLDADSTVVTGGDPELSLQDTPEGPCWVKV 348
            V  +G VGSL+GQQPIEVI+E S+ + FQ+M V+SVNDPVMT+S ST VSF N G   V SGTC+IQ  D  +  +   + EL L    EG C+VKV
Sbjct:  867 VGSQGQVGSLEGQQPIEVIVEGSSLINFQEMWVRSVNDPVMTISDSTAVSFTNDGSYSVASGTCIIQTDDPSTVTIDPDEDELIL----EGTCYVKV 959
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10132.232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FTH1_ECTSI5.180e-4580.17Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KH45_9PHAE6.710e-4375.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFA6_9PHAE1.770e-2660.34F5/8 type C domain-containing protein n=2 Tax=Ecto... [more]
A0A6H5KL74_9PHAE7.390e-2354.31F5/8 type C domain-containing protein n=3 Tax=Ecto... [more]
D7FUI8_ECTSI6.640e-2260.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZZ4_ECTSI1.020e-1754.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10132contigS-firma_F_contig10132:339..2824 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1638
Cds size204
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10132.232.1prot_S-firma_F_contig10132.232.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10132 1626..2677 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815541.0365868-UTR-S-firma_F_contig10132:338..16251622815541.0365868-UTR-S-firma_F_contig10132:338..1625Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10132 339..1625 -
1696949402.3299162-UTR-S-firma_F_contig10132:338..16251696949402.3299162-UTR-S-firma_F_contig10132:338..1625Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10132 339..1625 -
1622815541.0794501-UTR-S-firma_F_contig10132:2677..28241622815541.0794501-UTR-S-firma_F_contig10132:2677..2824Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10132 2678..2824 -
1696949402.3750207-UTR-S-firma_F_contig10132:2677..28241696949402.3750207-UTR-S-firma_F_contig10132:2677..2824Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10132 2678..2824 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815541.0470066-CDS-S-firma_F_contig10132:1625..17181622815541.0470066-CDS-S-firma_F_contig10132:1625..1718Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10132 1626..1718 -
1696949402.3433015-CDS-S-firma_F_contig10132:1625..17181696949402.3433015-CDS-S-firma_F_contig10132:1625..1718Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10132 1626..1718 -
1622815541.057613-CDS-S-firma_F_contig10132:2344..24331622815541.057613-CDS-S-firma_F_contig10132:2344..2433Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10132 2345..2433 -
1696949402.3590522-CDS-S-firma_F_contig10132:2344..24331696949402.3590522-CDS-S-firma_F_contig10132:2344..2433Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10132 2345..2433 -
1622815541.0690346-CDS-S-firma_F_contig10132:2655..26771622815541.0690346-CDS-S-firma_F_contig10132:2655..2677Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10132 2656..2677 -
1696949402.3670657-CDS-S-firma_F_contig10132:2655..26771696949402.3670657-CDS-S-firma_F_contig10132:2655..2677Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10132 2656..2677 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10132.232.1

>prot_S-firma_F_contig10132.232.1 ID=prot_S-firma_F_contig10132.232.1|Name=mRNA_S-firma_F_contig10132.232.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=68bp
MRVQSVNDPVMTVSGSTGVSFDNCGFSKVESGTCVIQVLDADSTVVTGGD
PELSLQDTPEGPCWVKV*
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mRNA from alignment at S-firma_F_contig10132:339..2824-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10132.232.1 ID=mRNA_S-firma_F_contig10132.232.1|Name=mRNA_S-firma_F_contig10132.232.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2486bp|location=Sequence derived from alignment at S-firma_F_contig10132:339..2824- (Sphaerotrichia firma ET2_F female)
AACAACTTCACCTTTGAGGCCACCATCGCCAACGAATGCTACGGCGACGA
CTGTGTGGTCGAGGGCGAGGGCAACGTGGGCAGCCTTGACGGGCAGCAGC
CTATCGAAGTCATCATCGAGACCTCCACCGACGTCAAGTTCCAAGACATG
AGGGTTCAATCAGTCAACGGTGAGCGCCTAACGCATCTTCCGTTCGTGTT
ACAAAGTCGCGAGTTGTCCGGGATTGAATGCAACAAGAGCGCAGGTGTCG
TTCCGTGCGTAATTGGTGAAGCTCCGTGGTGTTGTGATATCATCGCACAT
TATTACTTGGGAACGGTGACACCTTACTATGTTCTCCTCCTCACCCTTGT
TCGACTCTTGCTGTTGCTTGATTCTCCGAATGGTATCGTAGACCCTGTGA
TGACGGTCTCAGGCAGCACCGGCGTGTCGTTCGACAACTGCGGCTTCTCC
AAGGTCGAATCTGGGACATGCGTCATCCAGGTATGCACATAAATCGTAAC
CTACTCGAGCAACTCAGCCACCGCGGAGAGCTCCTACTGGTTGGTAGCAA
AGAAGGGGGGTGTGCTTCGCATGGCTGGCTTTGCTCGACCCACTGTGTAC
GCTGCTGCTGCCGGCGATGCGTCACTCCAGAAAACAGGATAAACTTGTGT
GTCACAGCGTAGAGCAATAGACAATTCCCCCCCGGCAAATGTCATCAAAC
GATGTTGACGAGTTTGGCAACAATTACGACAGCGCCTCGCCAGTAGTTTC
GGCGGGGGACATAATACTGTATAGCGTCCCCGGTTCCGCTTCAACATAGC
AAGCGAGATATACACCAGTCGGCTAGATAGAGAAGCCTGCCGCCAGAAAC
ATACTCTATTTGCTCCTTTTCGTGAATCACCCGCGTGGCAGGCTCAAGCC
ACGGCCACATCATCGTACGATTTCAGGCGCTTAACAGAAACGTTGCTTCC
CTTGTCATCCAAACGTCAAGTGTCGTAACATGCTGCGCTCTCGAGTCGAG
CATATAGCGCGTGCCCCGCATATACACACGTTCAACCGCCAGCACTTCAC
TCACCAAACGCCTCTTCATTTTCTCTCGAACGCTCCTTCCCACGGCCAAC
GTCCAGGTCCTCGACGCGGACAGCACGGTGGTGACGGGTGGAGATCCTGA
GCTCAGTCTGCAGGACACGCCCGAGGGCCCGTGCTGGGTCAAGGTGTAGG
CCGCCCTTTCAGCAGCAGAAAGCGATCGACAGCCCACGTCGCGGCGGCAC
GAAGTAATCATGGCAGTGCCGAGGGTGTCCCGCGTGATGGTATCCTGTGT
CACTATGAAAAGGTTCTGTGCAACTTTGACATCGACCCAACTCAACAGCT
TGGAGTGGCGGTGACGAGGGAGTCATGCCTTGTAGTCATACTTCGAAGTA
TATGTACAGTAAGGTGGTTCGTTGACTTCGGGGAATAGGCATGGCCGATG
TTGGTCCGTGCTTTACTTAAGTATCGCCCGTCGAACTCATACAGTAGTTC
GCAGGTTTCGACTTTGCTTGAAGAAAAATGCGTTTTGTTGCAAAGAGCGT
TCGTCGTCCATTTGCGAGGAGGAAATTTGTGCTTCGCGAGCGTGCCGTGG
ATGCCATGCACTAGTTGAACCGATACGGAAGAGAAATCGATGCTGTGAGC
TTCGTTGAATTCGCATACTATTCCACTACTGCGCCAGGCGAATCTGATAG
AGGTTGAGCGTTAGTAGGAGAAAAAGGGCAGGAATGCGCATCGAAGCGCC
AAGGCTTTGCGCAAGGGGGCGTGGCTTCACAGCAACTCTAGTCTAAACTA
TCGATGTGAAGGATGGAGGGAGGTTGATGTAGCTTGGTTGAAAGAATATA
CGTGGCGTTTTGTGAACGGTACCTCGCACTTAGACTACGTGCGGCGTGAT
GATCAAATTGTTTCCAGCACCAGTATTGCGGTTGATGTCGGGGCCAGACA
AGCAGAACTCCGAGGAAATTGTCTGATGGATCGCCCGCCGGTATTTCTGG
GGTTGACCACATCAGGTGTGACGAACTGGCGTTCGCCCGTGGGTGGGTTG
ATGAGGGCGAAGCAGATAGATCGCGTTCAATTGTATGTAGCACTATGACG
GCTGCCCCTCCGGCAGCCCCGGTTTCCATCCGCGACAAGTAGAGGCATTG
TTCGCATTGAATTAGTCCGGCGTATCTCTGTAGGTAGATCAATGAGAAAG
TAGATGTGTACTTGCGGCGGCCGGTAACAACGTCCTTGCTCGTAGGAATG
CACAAGTTCAAGATGCTGGGGGGGAAAAAATGGTACAAGTCTAGAATATG
TATGGAGAAGTAAATGTAGCACCGCGGCTCTCCTGTGTGTGTGTGTGCAT
GGCAATGTTTTGTGTTGGCTTGGAAATTGTGATGTATGGACATTCGACAA
TAGAGGGAGTACGTTGCGCCAGCTGCCTCGCCGTCTTGTCACGGCATCGA
CTACTCCGGTATATGCGAATACTTCTCCGATGTAGA
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Coding sequence (CDS) from alignment at S-firma_F_contig10132:339..2824-

>mRNA_S-firma_F_contig10132.232.1 ID=mRNA_S-firma_F_contig10132.232.1|Name=mRNA_S-firma_F_contig10132.232.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=408bp|location=Sequence derived from alignment at S-firma_F_contig10132:339..2824- (Sphaerotrichia firma ET2_F female)
ATGAGGGTTCAATCAGTCAACGATGAGGGTTCAATCAGTCAACGACCCTG
TGATGACGGTCTCAGGCAGCACCGGCGTGTCGTTCGACAACTGCGGCTTC
TCCAAGGTCGAATCTGGGACATGCGTCATCCAGACCCTGTGATGACGGTC
TCAGGCAGCACCGGCGTGTCGTTCGACAACTGCGGCTTCTCCAAGGTCGA
ATCTGGGACATGCGTCATCCAGGTCCTCGACGCGGACAGCACGGTGGTGA
CGGGTGGAGATCCTGAGCTCAGTCTGCAGGACACGCCCGAGGGCCCGTGC
TGGGTCAAGGTGTAGGTCCTCGACGCGGACAGCACGGTGGTGACGGGTGG
AGATCCTGAGCTCAGTCTGCAGGACACGCCCGAGGGCCCGTGCTGGGTCA
AGGTGTAG
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