mRNA_S-firma_F_contig10130.229.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10130.229.1
Unique NamemRNA_S-firma_F_contig10130.229.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10130.229.1 vs. uniprot
Match: D8LSF1_ECTSI (Nudix hydrolase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSF1_ECTSI)

HSP 1 Score: 363 bits (932), Expect = 9.050e-115
Identity = 191/300 (63.67%), Postives = 217/300 (72.33%), Query Frame = 1 
Query:  784 AGETDGVLVVEDLRSDVDGGVLGFCGAIDPLEATPAASAXXXXXXAQAPSTYISLRQGQEIDEQAASLLVRALHGWLGPEAAGGEAGRQGEKLAQGG------------EGEMVDWVDTKGRVVCALPRPVVHSRNVLHRGAGVMIRNDEGEVYCHRRTSTKRVFPSMYDMFIGGVSGTLEPVATTALRELGEELGLGPYGGCSSSSGSSSVPDRAEGEPLPA-SLRYRGECLVQTGHNRCVVSVFDYRVAPGESVRWQEEEVDWGGYLPWHEVVSKVSEGDWEFVPDGLQVWRHYLEWE 1644
            AG  + VL+VEDL +  DG VLGF GA+D   AT                TYI +R G+E+D     LL RALHGWL   AA   A R+    A  G            EGE+VDWVDT+GRV+CALPRPVVHS NVLHRGAGVMIR+ +GEVYCHRRTSTKRVFPSMYDMFIGGVSGT+EP  TTALRELGEELGLGPYG    +SGSS  P+    + L   S+RYRGECLVQTGHNRC VSVFDYRV  GE+V+WQE+EV+WG Y+PW EVVSKVSEG+WEFVPDGLQVW+HYL+WE
Sbjct:   88 AGADNRVLIVEDLEA--DGDVLGFFGALDSPTATGPTL-----------DTYICVRTGREVDRPTTRLLTRALHGWLSGPAAAAAATRRDRLGALAGTEEAGRPANEEEEGELVDWVDTRGRVICALPRPVVHSNNVLHRGAGVMIRDAKGEVYCHRRTSTKRVFPSMYDMFIGGVSGTMEPPLTTALRELGEELGLGPYG----NSGSS--PENQGDDGLKTTSMRYRGECLVQTGHNRCFVSVFDYRVVAGETVKWQEDEVEWGSYVPWEEVVSKVSEGEWEFVPDGLQVWQHYLDWE 368
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BLAST of mRNA_S-firma_F_contig10130.229.1 vs. uniprot
Match: A0A4D9D9L5_9STRA (Nudix hydrolase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9L5_9STRA)

HSP 1 Score: 156 bits (394), Expect = 7.780e-38
Identity = 97/254 (38.19%), Postives = 141/254 (55.51%), Query Frame = 1 
Query:  943 SLRQGQEIDEQAASLLVRALH-GWLGPEAAGGEAGRQGEKLAQGGEGEMVDWVDTKGRVVC-----ALPRPVVHSRNVLHRGAGVMIRNDEGEVYCHRRTSTKRVFPSMYDMFIGGVSGTLEPVATTALRELGEELGLGPYGGCSSSSGSSSVPDRAEGEPLPASLRYRGECLVQTGHNRCVVSVFDYRVAPG--ESVRWQEEEVDWGGYLPWHEVVSKV----SEGDWEFVPDGLQVWRHYLEWEEEAAATPS 1668
            SLRQ    DE+  +L++RAL    +   ++  +    G++       E V WV+  G  +       LPRP++H  NVLH+GAG+++R+ +  V+ H+R++ KR+FPS+YDMF+GGVS  +E   TTA REL EELG GP   C++   S+               R+  + LV+T +NRC V V++Y VA G  ES     EEV WG ++P  EV  +V      G+W FVPDGL VW  +L   +  +A  S
Sbjct:  148 SLRQ----DEEVCNLILRALEKNPVRHSSSATQCEADGDEKV-----ERVSWVNNHGHDLLPKSSKGLPRPLMHRLNVLHKGAGILVRDAQSRVFVHQRSTHKRIFPSLYDMFVGGVSLFMEDTKTTARRELQEELGFGPAA-CAAQEESTD-------------FRFLFDVLVETSYNRCFVDVYEYVVAGGQEESAVLDPEEVQWGDWIPMEEVTRRVLLNGRSGEWTFVPDGLLVWAAFLRATDAGSANLS 378
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BLAST of mRNA_S-firma_F_contig10130.229.1 vs. uniprot
Match: A0A7S2NSK3_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NSK3_9STRA)

HSP 1 Score: 140 bits (353), Expect = 1.790e-31
Identity = 86/229 (37.55%), Postives = 119/229 (51.97%), Query Frame = 1 
Query: 1081 EMVDWVDTKGRVVCALPRPVVHSRNVLHRGAGVMIRND----EG------EVYCHRRTSTKRVFPSMYDMFIGGVSGTLEPVATTALRELGEELGLGPYGGCSSSSGSSSVPDRAEGEPLPASLRYRGECLVQTGHNRCVVSVFDYRV-APGESVRWQEEEVDWGGYLPWHEV-------VSKVSEGD------------------------WEFVPDGLQVWRHYLEW 1641
            E+V+ VD+ G  +  +PR +VH  N+LHRG G+++  D    +G      +VY H+RTSTKR+FPS+YDMF+GGVS   E    TA RE+ EELGL                D A  EPL        +C++ T +NRC+V+VF YR  A  E ++WQEEEV WG Y+ +  +       + ++ EG                         W+FVPDGL VW  + EW
Sbjct:  303 ELVEMVDSVGNPLGIIPRDLVHKLNLLHRGIGIVVAKDCHIVQGTSTELPDVYVHQRTSTKRIFPSLYDMFVGGVSEAGEEAMVTASREVAEELGL------------QRGLDGALSEPL-------FKCVICTSYNRCIVTVFTYRCNAKEEILKWQEEEVAWGDYVSYPIIEAAAQLSIERLIEGGKWPGKQQGPLGPLQLEYNDGEWKTWDFVPDGLLVWEAWKEW 512
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BLAST of mRNA_S-firma_F_contig10130.229.1 vs. uniprot
Match: A0A7S4T0F2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T0F2_9STRA)

HSP 1 Score: 138 bits (348), Expect = 2.380e-31
Identity = 86/245 (35.10%), Postives = 119/245 (48.57%), Query Frame = 1 
Query: 1081 EMVDWVDTKG-RVVCALPRPVVHSRNVLHRGAGVMIRNDEGE-------VYCHRRTSTKRVFPSMYDMFIGGVSGTLEPVATTALRELGEELGLGPYGGCSSSSGSSSVPDRAEG-------EPLPASLRYRGECLVQTGHNRCVVSVFDYRVAPGE--SVRWQEEEVDWGGYLPWHEV-------VSKVSEGD--------------------------------WEFVPDGLQVWRHYLEWEE 1647
            E V+ VD  G  ++  LPR +VH  N+LHRG GV++ +D          VY HRRT TKR+FPS+YDMF+GGVS   E    TA RE+ EE+GL           S  +  + EG       E          +C++ T +NRCVV+VF Y     E  S++WQEEEV WGG++P+  V       + ++ EG                                 W++VPDGL VW  +L W++
Sbjct:  200 EWVEMVDASGSNMLGILPRILVHKLNLLHRGIGVVVLSDHDHQQHQTENVYVHRRTDTKRIFPSLYDMFVGGVSSAFEDSKLTAAREVAEEIGL-----------SKGLQQQLEGGNDDAIDEKTQILSNELFKCVICTSYNRCVVTVFTYDCMENEKDSIKWQEEEVAWGGFVPYDVVEKSARLSIDRLKEGGKWPGTGMDEEEESEEVGDHNTLVEGSKEVWKKWDYVPDGLLVWEAWLRWKK 433
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BLAST of mRNA_S-firma_F_contig10130.229.1 vs. uniprot
Match: A0A2E3A4P0_9BACT (NUDIX hydrolase n=2 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E3A4P0_9BACT)

HSP 1 Score: 129 bits (323), Expect = 1.100e-30
Identity = 76/187 (40.64%), Postives = 103/187 (55.08%), Query Frame = 1 
Query: 1081 EMVDWVDTKGRVVCALPRPVVHSRNVLHRGAGVMIRNDEGEVYCHRRTSTKRVFPSMYDMFIGGVSGTLEPVATTALRELGEELGL-GPYGGCSSSSGSSSVPDRAEGEPLPASLRYRGECLVQTGHNRCVVSVFDYRVAPGESVRWQEEEVDWGGYLPWHEVVSKVSEGDWEFVPDGLQVWRHYLE 1638
            E+VD +D + RVV    R  +   N+LHRG G++  + +G +Y HRRT TK VFP MYDMF+GGV G  E     A RE+ EELG+ GP                 + EP+   L Y G        NR +V+V  Y+V     +R Q EEV+WG Y+   E+ +K+  G+W FVPDGL++W H  E
Sbjct:   10 ELVDLIDEQDRVVGWARRERIRRLNLLHRGVGILCLDPDGRIYVHRRTETKDVFPGMYDMFVGGVVGKGEDRDLAAAREIAEELGIEGP-----------------QPEPICRYL-YLGPL------NRSLVAV--YKVTWEGKIRHQPEEVEWGSYMSIEEIEAKI--GEWNFVPDGLEIWNHIRE 168
[Close]
BLAST of mRNA_S-firma_F_contig10130.229.1 vs. uniprot
Match: A0A7S0GKM9_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GKM9_9STRA)

HSP 1 Score: 131 bits (329), Expect = 1.700e-30
Identity = 91/242 (37.60%), Postives = 120/242 (49.59%), Query Frame = 1 
Query: 1081 EMVDWVDTKGRVVCALPRPVVHSRNVLHRGAGVMI---RN-DEGE-------------VYCHRRTSTKRVFPSMYDMFIGGVSGTLEPVATTALRELGEELGLGPYGGCSSSSGSSSVPDRAEGEPLPASLRYRGECLVQTGHNRCVVSVFDYRVAPGESV-RWQEEEVDWGGYLPWHEVVSKV------------------SEGD----------------WEFVPDGLQVWRHYLEWEEE 1650
            E+V+ VD  G  +  +PR +VH  N+LHRG GVM+   RN  +G+             VY HRRT  KRVFPS+YDMF+GGVSG  EP   TA REL EELGL       +++G  +    +E       + +R  C V T +NRCVVS+F Y +     V  WQEEEV WG ++P+  V                      S+GD                W+FVPDGL VW  + +W  +
Sbjct:    8 ELVEMVDGSGTPLAMVPRELVHRFNLLHRGIGVMVFDTRNAGDGDXXXDVRSDLRIPRVYVHRRTDHKRVFPSLYDMFVGGVSGAGEPPELTARRELAEELGLVRV--LRTTNGDDTHQQLSE-------MLFR--CTVCTSYNRCVVSMFAYTMDNQRDVISWQEEEVAWGTFVPYPMVQQAARLSIDRLKSRNAWPGDDFSDGDLQTVDCLDIKGTDWKEWDFVPDGLLVWEAWEQWRRQ 238
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BLAST of mRNA_S-firma_F_contig10130.229.1 vs. uniprot
Match: K0R8X5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R8X5_THAOC)

HSP 1 Score: 134 bits (338), Expect = 4.290e-30
Identity = 85/240 (35.42%), Postives = 120/240 (50.00%), Query Frame = 1 
Query: 1081 EMVDWVDTKGRVVCALPRPVVHSRNVLHRGAGVMIRNDEG-----------EVYCHRRTSTKRVFPSMYDMFIGGVSGTLEPVATTALRELGEELGLGPYGGCSSSSGSSSVPDRAEGEPLPASLRYRGECLVQTGHNRCVVSVFDYRVAPG-ESVRWQEEEVDWGGYLPWHEVVSK--------VSEGDW-------------------------------EFVPDGL---QVWRHYLE 1638
            E+VD V + G+V+ ++PR +VH  N+LHRG G++I  D+            +VYCH+RT TKRVFPS+YDMF+GGVS + E    TA RE+ EELG+           + ++ +    +  P S     +C + T +NRCVVS F Y      ES+ WQEEEV WG ++P+  V           V++G W                               ++VPDGL   Q W+ YLE
Sbjct:  197 ELVDMVCSDGQVLGSVPRNLVHKYNLLHRGIGMIISKDDNIFETFRTGRLPQVYCHQRTDTKRVFPSLYDMFVGGVSASFERSRLTAAREVAEELGM---------KRALNLMEEGLDDESPLSQELF-QCTIATSYNRCVVSFFTYTCDTSVESLAWQEEEVQWGQFVPYDIVEESADLSIERLVNDGAWPGEKVILDYEPTIMSLKERYSEEKYEGWERWDYVPDGLLVWQAWKKYLE 426
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BLAST of mRNA_S-firma_F_contig10130.229.1 vs. uniprot
Match: A0A1Z5JA98_FISSO (Nudix hydrolase domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JA98_FISSO)

HSP 1 Score: 134 bits (338), Expect = 4.740e-30
Identity = 86/235 (36.60%), Postives = 115/235 (48.94%), Query Frame = 1 
Query: 1078 GEMVDWVDTKGRVVCALPRPVVHSRNVLHRGAGVMIRND---EG----EVYCHRRTSTKRVFPSMYDMFIGGVSGTLEPVATTALRELGEELGLGPYGGCSSSSGSSSVPDRAEGEPLPASLRYRGECLVQTGHNRCVVSVFDYRV-APGESVRWQEEEVDWGGYLPWHEV----------------------------VSKVSEGD-------------WEFVPDGLQVWRHYL 1635
            GEMV+ VD  G V+  +PR +VH  N+LHRG G+ +  D   EG    ++Y HRRT TKR+FPS+YDMF+GGVS   E    TA RE+ EELGL             S  D    E L        +C+V T +NRCVV +F Y +    ES++WQ+EEV WG ++P+  +                            + K+   D             W+FVPDGL VW  +L
Sbjct:  214 GEMVEMVDRTGAVLGHVPRKLVHQHNILHRGIGIFVTKDDPMEGNQRPDLYTHRRTETKRIFPSLYDMFVGGVSLAGEDAFITAQREVEEELGL-------------SCRDHLRPERLL-------QCVVCTAYNRCVVDLFVYLMNTKEESIKWQDEEVAWGSFVPYKTIEAAADRSIHRLAERGEWPGRYPPIQSSRMGKLDPEDETIRFEGAMEWTSWDFVPDGLLVWEAWL 428
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BLAST of mRNA_S-firma_F_contig10130.229.1 vs. uniprot
Match: A0A7S0CKQ7_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CKQ7_9STRA)

HSP 1 Score: 132 bits (332), Expect = 4.510e-29
Identity = 92/245 (37.55%), Postives = 118/245 (48.16%), Query Frame = 1 
Query: 1072 GEGEMVDWVDTKGRVVCALPRPVVHSRNVLHRGAGVMI---RN-DEGE-------------VYCHRRTSTKRVFPSMYDMFIGGVSGTLEPVATTALRELGEELGLGPYGGCSSSSGSSSVPDRAEGEPLPASLRYRGECLVQTGHNRCVVSVFDYRVAPGESV-RWQEEEVDWGGYLPWHEVVSKV------------------SEGD----------------WEFVPDGLQVWRHYLEWEEE 1650
            G  E+V+ VD  G  +  +PR +VH  N+LHRG GVM+   RN  +G+             VY HRRT  KRVFPS+YDMF+GGVSG  EP   TA REL EELGL       S S     P  +E       + +R  C V T +NRCVVS+F Y +     V  WQ+EEV WG ++ +  V                      S+GD                W+FVPDGL VW  + +W  +
Sbjct:  214 GTSELVEMVDGSGTPLAMVPRELVHRFNLLHRGIGVMVFDTRNAGDGDXXXDVRSDLRIPRVYVHRRTDHKRVFPSLYDMFVGGVSGAGEPPELTARRELAEELGLVRVLRDGSGSDDEKTPQLSE-------MLFR--CTVCTSYNRCVVSMFAYTMDNHRDVISWQKEEVAWGTFVEYPMVQQAARLSIDRLKSRNAWPGDDFSDGDLQTVDCLDIKGTDWKEWDFVPDGLLVWEAWEQWRRQ 449
[Close]
BLAST of mRNA_S-firma_F_contig10130.229.1 vs. uniprot
Match: B7FXH4_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FXH4_PHATC)

HSP 1 Score: 132 bits (331), Expect = 4.880e-29
Identity = 84/247 (34.01%), Postives = 120/247 (48.58%), Query Frame = 1 
Query: 1081 EMVDWVDTKGRVVCALPRPVVHSRNVLHRGAGVMIRND-------------------EGEVYCHRRTSTKRVFPSMYDMFIGGVSGTLEPVATTALRELGEELGLGPYGGCSSSSGSSSVPDRAEGEPLPASLRYRGECLVQTGHNRCVVSVFDYRV-APGESVRWQEEEVDWGGYLPWHEVVSKV--------SEGDW-----------------------------EFVPDGLQVWRHYLEWEEE 1650
            E+V+ +D  G+++  +PR +VH  N+LHRG GV I  D                   + ++YCHRRTSTKR+FP +YDMF+GGV+   E    TALRE+GEELGL                  A+G     ++     C+V TG+NRCVV ++ Y +    E V WQ EEV WG ++P++ V + V        S+G W                             ++VPDGL VW  +L + +E
Sbjct:  225 EIVEMMDRDGKILGKVPRNLVHEYNLLHRGVGVFITRDVPLQLPIHGARNSSPSPTHQPDLYCHRRTSTKRIFPDLYDMFVGGVALAGEDSRRTALREVGEELGL------------------AQGNIGDEAIL---TCVVCTGYNRCVVDLYCYVMNTMAERVSWQAEEVAWGDFVPFNAVQASVDLSIQRLVSDGSWPGRYPPIQSSYNGVFPKDEFSSIRNWDSWDYVPDGLLVWEAWLRYLKE 450
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10130.229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSF1_ECTSI9.050e-11563.67Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A4D9D9L5_9STRA7.780e-3838.19Nudix hydrolase domain-containing protein n=2 Tax=... [more]
A0A7S2NSK3_9STRA1.790e-3137.55Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A7S4T0F2_9STRA2.380e-3135.10Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A2E3A4P0_9BACT1.100e-3040.64NUDIX hydrolase n=2 Tax=Planctomycetes bacterium T... [more]
A0A7S0GKM9_9STRA1.700e-3037.60Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
K0R8X5_THAOC4.290e-3035.42Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A1Z5JA98_FISSO4.740e-3036.60Nudix hydrolase domain-containing protein n=2 Tax=... [more]
A0A7S0CKQ7_9STRA4.510e-2937.55Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
B7FXH4_PHATC4.880e-2934.01Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10130contigS-firma_F_contig10130:1000..5113 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LSF1
PFAMsNUDIX
Max annot lvl2759|Eukaryota
Evalue5.35e-126
EggNOG OGsCOG0494@1|root,2S4X7@2759|Eukaryota
Descriptionm7G(5')pppN diphosphatase activity
COG categoryL
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionNUDIX hydrolase domain-like
Ec32 orthologEc-21_003460.1
Exons6
Model size2560
Cds size1521
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10130.229.1prot_S-firma_F_contig10130.229.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10130 1925..4960 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815540.7807314-UTR-S-firma_F_contig10130:999..12161622815540.7807314-UTR-S-firma_F_contig10130:999..1216Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10130 1000..1216 -
1696949402.1986446-UTR-S-firma_F_contig10130:999..12161696949402.1986446-UTR-S-firma_F_contig10130:999..1216Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10130 1000..1216 -
1622815540.7923617-UTR-S-firma_F_contig10130:1255..19241622815540.7923617-UTR-S-firma_F_contig10130:1255..1924Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10130 1256..1924 -
1696949402.2105458-UTR-S-firma_F_contig10130:1255..19241696949402.2105458-UTR-S-firma_F_contig10130:1255..1924Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10130 1256..1924 -
1622815540.8726385-UTR-S-firma_F_contig10130:4960..51131622815540.8726385-UTR-S-firma_F_contig10130:4960..5113Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10130 4961..5113 -
1696949402.267706-UTR-S-firma_F_contig10130:4960..51131696949402.267706-UTR-S-firma_F_contig10130:4960..5113Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10130 4961..5113 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815540.8030412-CDS-S-firma_F_contig10130:1924..20351622815540.8030412-CDS-S-firma_F_contig10130:1924..2035Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10130 1925..2035 -
1696949402.220284-CDS-S-firma_F_contig10130:1924..20351696949402.220284-CDS-S-firma_F_contig10130:1924..2035Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10130 1925..2035 -
1622815540.8175402-CDS-S-firma_F_contig10130:2514..26841622815540.8175402-CDS-S-firma_F_contig10130:2514..2684Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10130 2515..2684 -
1696949402.2300735-CDS-S-firma_F_contig10130:2514..26841696949402.2300735-CDS-S-firma_F_contig10130:2514..2684Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10130 2515..2684 -
1622815540.8335402-CDS-S-firma_F_contig10130:3202..33981622815540.8335402-CDS-S-firma_F_contig10130:3202..3398Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10130 3203..3398 -
1696949402.2393796-CDS-S-firma_F_contig10130:3202..33981696949402.2393796-CDS-S-firma_F_contig10130:3202..3398Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10130 3203..3398 -
1622815540.8521454-CDS-S-firma_F_contig10130:3688..44541622815540.8521454-CDS-S-firma_F_contig10130:3688..4454Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10130 3689..4454 -
1696949402.248522-CDS-S-firma_F_contig10130:3688..44541696949402.248522-CDS-S-firma_F_contig10130:3688..4454Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10130 3689..4454 -
1622815540.862794-CDS-S-firma_F_contig10130:4682..49601622815540.862794-CDS-S-firma_F_contig10130:4682..4960Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10130 4683..4960 -
1696949402.2578702-CDS-S-firma_F_contig10130:4682..49601696949402.2578702-CDS-S-firma_F_contig10130:4682..4960Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10130 4683..4960 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10130.229.1

>prot_S-firma_F_contig10130.229.1 ID=prot_S-firma_F_contig10130.229.1|Name=mRNA_S-firma_F_contig10130.229.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=507bp
MTPTSATAVYLTTIGAALAMISTSGTAFVATSTTVPRFSTGATAARHSPA
HGRAEETCHDCPAAAAAAAAAAATTAKPKLVTAARDFETFFDSYRVRPRA
ASEGVVHAEGSRLLVSRGREEDVVAALRSGGESNVISTCCRTWLLCCTAV
PPLQTVALGHHPGAVRWSAGARATTLALHSVRIGVEQPCASDFDATPALP
PGIRFEPSHSAGETDGVLVVEDLRSDVDGGVLGFCGAIDPLEATPAASAA
ASAAAAQAPSTYISLRQGQEIDEQAASLLVRALHGWLGPEAAGGEAGRQG
EKLAQGGEGEMVDWVDTKGRVVCALPRPVVHSRNVLHRGAGVMIRNDEGE
VYCHRRTSTKRVFPSMYDMFIGGVSGTLEPVATTALRELGEELGLGPYGG
CSSSSGSSSVPDRAEGEPLPASLRYRGECLVQTGHNRCVVSVFDYRVAPG
ESVRWQEEEVDWGGYLPWHEVVSKVSEGDWEFVPDGLQVWRHYLEWEEEA
AATPSH*
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mRNA from alignment at S-firma_F_contig10130:1000..5113-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10130.229.1 ID=mRNA_S-firma_F_contig10130.229.1|Name=mRNA_S-firma_F_contig10130.229.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=4114bp|location=Sequence derived from alignment at S-firma_F_contig10130:1000..5113- (Sphaerotrichia firma ET2_F female)
GTTGCAAGCTATTGGCTCCTCGCGGTCTCGCAGTGTGTCGGGAATTGAAT
AGATAGGGGGCAAAGCGCCAGCCAGGGTTGGTTAGAGTGTGCCAAGGGCT
TCCCTTGGCCTGTTGACTGCCACCTGCCACCCCGACCAGGCTGGCTCTCC
CTCATGACACCAACCTCGGCAACAGCAGTCTATTTGACAACCATCGGGGC
AGCCCTTGCCATGATATCGACCTCGGGAACGGCGTTTGTGGCTACCAGCA
CCACGGTCCCACGTTTTTCCACGGGTGCCACAGCGGCAAGGCACTCTCCA
GCACACGGCAGAGCGGAGGAAACATGTCATGATTGTCCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAACCACCGCCAAACCCAAGCTCGTCACAG
CGGCGCGCGACTTCGAGACATTCTTCGACAGGTCAGTCTACGGCCTGAAC
GCGTTGCCGTTGACTTTCTCGCCCAGCTCTTTCGGTGAGCGCCTCTCAAA
GCCACCATGAGAAACCTCGCTCCCACAGCAGTCGACCGAACCTTCAAATC
TCCGCATTGTGCATGGTGTTTTTTGTGCCGTTGGCACATGTGTCGTGGTG
CAGCTCCTGAAAGATATGTAACCCGTGCGTCGATGTCGTATGTACTTCGC
TCAACACAGTTACAGGGTCAGACCGAGGGCTGCTTCCGAGGGCGTCGTGC
ATGCCGAAGGAAGCCGGCTGTTGGTTTCTCGTGGGCGGGAGGAAGATGTC
GTTGCTGCCCTGCGGAGTGGCGGTGAGTCGAACGTCATATCAACCTGCTG
TAGAACGTGGCTGCTGTGCTGTACTGCTGTACCACCGCTGCAAACAGTAG
CTCTTGGGCATCACCCAGGGGCTGTGCGTTGGAGCGCGGGCGCACGGGCA
ACTACGCTTGCCCTTCACTCGGTTCGAATCGGCGTAGAGCAGCCCTGTGC
TTCCGATTTCGACGCAACGCCGGCCTTGCCCCCCGGCATTCGTTTCGAAC
CCTCCCACTCAGCCGGGGAAACCGACGGCGTGCTCGTTGTCGAGGACCTG
CGGTCAGACGTTGATGGTGGCGTTCTCGGCTTCTGTGGAGCAATCGACCC
GCTCGAAGCCACTCCTGCCGCCTCCGCCGCCGCCTCCGCCGCCGCCGCCC
AAGCCCCGAGCACCTACATCTCCTTGCGACAAGGGCAGGAGATCGATGAG
CAAGCCGCAAGCCTTCTCGTCCGAGCGCTTCACGGCTGGTTGGGCCCGGA
GGCGGCGGGGGGCGAGGCAGGGCGGCAAGGGGAGAAGCTGGCCCAGGGAG
GGGAGGGAGAAATGGTGGACTGGGTCGACACGAAGGGGAGGGTCGTCTGC
GCGCTGCCGAGGCCGGTGGTTCACTCCCGTAACGTTCTCCACCGCGGCGC
AGGGGTCATGATCCGCAACGACGAGGCAAGACGGCGGTGTGTGTGCGTGT
GTGCAGCAGTACGTCGAGTGTTCTTTTGTACTACTGTCGTGCAAGGAAAA
AGCACATGTGCTGGTGGTTTCTTGCCTGGTTTCCGGCACGTTTTTATTGT
TCGGCGGGTGTCCTAGACCACCGCCTTCACTCCGCCGTAGAACAGATTGG
GTATACTGCAGGTAGACCATCCGTCCGTGTTTGCCTTGACACACACCCGG
CCAAAACGAACACCTCCTGGCGCCACGCGGCGCTTCCTTCCTTCCTTCCC
TCCGGACATTACCAGGGGGAGGTGTACTGCCACCGGCGGACGTCGACGAA
GAGAGTGTTCCCTTCCATGTACGACATGTTCATCGGAGGAGTGTCGGGGA
CCCTGGAGCCGGTGGCGACGACCGCTCTGCGAGAGCTCGGCGAGGAGCTG
GGGCTGGGCCCGTACGGCGGCTGCAGCAGCAGCAGCGGCAGCAGCAGCGT
CCCCGATCGCGGTACGCTGGGGTTGAGCTGAGTGTTGGTCGGTTTTTTTT
TTCGTGGTTTCATAAAAGAGAGGAAGCCTGCTATGTAGCGAGGTGTATAC
TCTCACCCTGTTGCCCTGGGTGCAGGTCAGCAAGGTGACAAGAACCGAGC
TAAAAGTACTATCATGCCACCGTGTTTTGGTACAGTAGTAGCTTGGGCTT
AACTTCATCGGCAGCGTGCCCTCGCGGCATTAATCACACAACCCCACTCG
GATCGGGGTGCAGGGCGTTTTGGCACACAGCATGGTACGCACGAAAAAGT
AGGCATTACGCACGCGCCGCTGCAGTACCGTTGGGATTCAGCAAGAACAG
AAACAGCGCACCATTCTCTCGGAGGGAGGTGAGGTTGGGTTTTAACGGAG
AAGAGCGTGGAAGAGCGCAGAGAGAAAGGGAGACAGACCACACTATAGAC
AACTTCTCCATTCCTGGCCTCCGCCGCCCGCCTGAAACTGATCTTGCATT
CGTCACTTGACCCCGATCGACCCATCCAGCGGAGGGCGAGCCCCTCCCGG
CATCCCTGCGCTACCGCGGGGAGTGCCTGGTGCAGACGGGCCACAACCGC
TGCGTGGTATCGGTGTTCGACTACCGCGTGGCTCCGGGGGAGTCGGTCCG
GTGGCAGGAGGAGGAGGTGGACTGGGGGGGCTATCTGCCGTGGCACGAGG
TGAGAGCACTCCTGCAGGTTGACTGGGAGAGGAGGAGACGGCGGCGGCGG
CGGCGGCGGCGGCTGAGTTTTTAGAGTACACCGGAGTACGGCTCTTGAAA
AAGCGGAAGAGTTATGAGGTGCTATAGATCTGCTTCGAATTTACTATAGG
ACGCGACAGCCAGGCTCTCTTTGAGGTCGTGTTCTGGGAGAGAAGAGCAA
AAATTGGTCGGGGGTGCAGCAGTAGAAATCCGGGAATGCAACGTCTCGCG
CGCGAGCTTCTGCCCCGCCAGGCGCGATCCGTAAACGGTTTTGGCTGCGG
CGTGGCCCGGTTGCTAGAGCGTTGTACGGGCGAGCATCGGAGTTCTCCTT
CGACGTGTGCCCCTCGTCGAGAGATAGTTTCGCCGCGCAGACCGTCATTT
TGTTGGCGCATGTGTTCGGAACAAATAAATCCCGGCCCAACCTTCGACTT
TCCGCCACCCACCCCGCGGCACAAACAGGTTGTGTCAAAGGTATCCGAGG
GGGACTGGGAGTTCGTCCCCGATGGTCTGCAGGTGTGGCGACACTACCTC
GAATGGGAAGAAGAGGCCGCAGCAACGCCGTCACACTGAGGGAAAGGGGG
GGGGGGGGGGCGCCTTGTCTTTCCCCCGCCCGCCCGGCGCGGTGGAACTC
TTCGCGCTTCGAAATTTCCCGGCCAAAGAATAGCGTTAGTTTTTGTGTGC
GATGGGGGTGACGCAGGGTTTGGTTGTGGGTATCGCGTGTCGCCACTGCT
GTTGGTGCGCTGCGCCGAGCTTCGACAGCGTAGCTAAATGCTCGAATTTT
TAGGGTGGTTTTGGGACCAGACCACAAACCATAACCAACGCACGGGAGGC
CGGCGCACAACCTCGCGGAGAGTCTCGGGGAACGTGTCCTAGGGTAGGGT
GGGGTCCGTCTGGTCGTTTTCTGTTGTGTCGCCCCCCTCTTCGCCTGGCG
TTCAACCCTCCCTCTCTCGTTTGGCACGGACGCCTTGACAAGCTCTCTCC
CGACTACTGTAGGAAGGGAGAAAGAACATTCGAGGTTTCTGAACGAGCCT
GGCGTTTTTTTCTACGATGCCAACAGCGATAAACATGGCGAAAACGTCGT
GGGACGTCGTTATGCTGCGCGTCAGGAGAACGAAGGAAGTCGCAGCCTGA
AGGGCCGAAGAGGTTCGATTTAAAAACAACCAACCGTGTCTGGACCAACA
AAAAAAACTGAACGTCAGGGCAGAGCTACGGGCCAGCAAGTGTGTGTTTG
GTGCCTGGGCACCTTCTTCGCACGCCTTGGAATGTTTCTGTCCTTGGCTC
CTTCCCGAGGCGAGATGTTGTTTTCTACCCCCGCTGGCCGGTACATGCTT
CGAAAAGCAATTTGTTCATGATTTCCTTGCCAGCAGAGGCGAGATAGATG
CGCCTTTGCCCCCCCCTTATCCTCCAAACATGGGAGAGAACAAAAAGGGC
AGCCAACAACTGATGTCCACCGCAGATCAACTTTCGCGCTGTGGTGCAGC
TCGGTTATTTCAAC
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Coding sequence (CDS) from alignment at S-firma_F_contig10130:1000..5113-

>mRNA_S-firma_F_contig10130.229.1 ID=mRNA_S-firma_F_contig10130.229.1|Name=mRNA_S-firma_F_contig10130.229.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=3042bp|location=Sequence derived from alignment at S-firma_F_contig10130:1000..5113- (Sphaerotrichia firma ET2_F female)
ATGACACCAACCTCGGCAACAGCAGTCTATTTGACAACCATCGGGGCAGC
CCTTGCCATGATATCGACCTCGGGAACGGCGTTTGTGGCTACCAGCACCA
CGGTCCCACGTTTTTCCACGGGTGCCACAGCGGCAAGGCACTCTCCAGCA
CACGGCAGAGCGGAGGAAACATGTCATGATTGTCCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAACCACCGCCAAACCCAAGCTCGTCACAGCGG
CGCGCGACTTCGAGACATTCTTCGACAGATGACACCAACCTCGGCAACAG
CAGTCTATTTGACAACCATCGGGGCAGCCCTTGCCATGATATCGACCTCG
GGAACGGCGTTTGTGGCTACCAGCACCACGGTCCCACGTTTTTCCACGGG
TGCCACAGCGGCAAGGCACTCTCCAGCACACGGCAGAGCGGAGGAAACAT
GTCATGATTGTCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACC
ACCGCCAAACCCAAGCTCGTCACAGCGGCGCGCGACTTCGAGACATTCTT
CGACAGTTACAGGGTCAGACCGAGGGCTGCTTCCGAGGGCGTCGTGCATG
CCGAAGGAAGCCGGCTGTTGGTTTCTCGTGGGCGGGAGGAAGATGTCGTT
GCTGCCCTGCGGAGTGGCGGTGAGTCGAACGTCATATCAACCTGCTGTAG
AACGTGGCTGCTGTGCTGTACTGCTGTACCACCGCTGCAAACAGTAGCTC
TTGGGCATCACCCAGGGGCTGTGCGTTGGAGCGCGGGCGCACGGGCAACT
ACGCTTGCCCTTCACTCGGTTCGAATCGGCGTAGAGCAGCCCTGTGCTTC
CGATTTCGACGCAACGCCGGCCTTGCCCCCCGGCATTCGTTTCGAACCCT
CCCACTCAGCCGGGGAAACCGACGGCGTGCTCGTTGTCGAGGACCTGCGG
TCAGACGTTGATGGTGGCGTTCTCGGCTTCTGTGGAGCAATCGACCCGCT
CGAAGCCACTCCTGCCGCCTCCGCCGCCGCCTCCGCCGCCGCCGCCCAAG
CCCCGAGCACCTACATCTCCTTGCGACAAGGGCAGGAGATCGATGAGCAA
GCCGCAAGCCTTCTCGTCCGAGCGCTTCACGGCTGGTTGGGCCCGGAGGC
GGCGGGGGGCGAGGCAGGGCGGCAAGGGGAGAAGCTGGCCCAGGGAGGGG
AGGGAGAAATGGTGGACTGGGTCGACACGAAGGGGAGGGTCGTCTGCGCG
CTGCCGAGGCCGGTGGTTCACTCCCGTAACGTTCTCCACCGCGGCGCAGG
GGTCATGATCCGCAACGACGAGTTACAGGGTCAGACCGAGGGCTGCTTCC
GAGGGCGTCGTGCATGCCGAAGGAAGCCGGCTGTTGGTTTCTCGTGGGCG
GGAGGAAGATGTCGTTGCTGCCCTGCGGAGTGGCGGTGAGTCGAACGTCA
TATCAACCTGCTGTAGAACGTGGCTGCTGTGCTGTACTGCTGTACCACCG
CTGCAAACAGTAGCTCTTGGGCATCACCCAGGGGCTGTGCGTTGGAGCGC
GGGCGCACGGGCAACTACGCTTGCCCTTCACTCGGTTCGAATCGGCGTAG
AGCAGCCCTGTGCTTCCGATTTCGACGCAACGCCGGCCTTGCCCCCCGGC
ATTCGTTTCGAACCCTCCCACTCAGCCGGGGAAACCGACGGCGTGCTCGT
TGTCGAGGACCTGCGGTCAGACGTTGATGGTGGCGTTCTCGGCTTCTGTG
GAGCAATCGACCCGCTCGAAGCCACTCCTGCCGCCTCCGCCGCCGCCTCC
GCCGCCGCCGCCCAAGCCCCGAGCACCTACATCTCCTTGCGACAAGGGCA
GGAGATCGATGAGCAAGCCGCAAGCCTTCTCGTCCGAGCGCTTCACGGCT
GGTTGGGCCCGGAGGCGGCGGGGGGCGAGGCAGGGCGGCAAGGGGAGAAG
CTGGCCCAGGGAGGGGAGGGAGAAATGGTGGACTGGGTCGACACGAAGGG
GAGGGTCGTCTGCGCGCTGCCGAGGCCGGTGGTTCACTCCCGTAACGTTC
TCCACCGCGGCGCAGGGGTCATGATCCGCAACGACGAGGGGGAGGTGTAC
TGCCACCGGCGGACGTCGACGAAGAGAGTGTTCCCTTCCATGTACGACAT
GTTCATCGGAGGAGTGTCGGGGACCCTGGAGCCGGTGGCGACGACCGCTC
TGCGAGAGCTCGGCGAGGAGCTGGGGCTGGGCCCGTACGGCGGCTGCAGC
AGCAGCAGCGGCAGCAGCAGCGTCCCCGATCGCGGGGGAGGTGTACTGCC
ACCGGCGGACGTCGACGAAGAGAGTGTTCCCTTCCATGTACGACATGTTC
ATCGGAGGAGTGTCGGGGACCCTGGAGCCGGTGGCGACGACCGCTCTGCG
AGAGCTCGGCGAGGAGCTGGGGCTGGGCCCGTACGGCGGCTGCAGCAGCA
GCAGCGGCAGCAGCAGCGTCCCCGATCGCGCGGAGGGCGAGCCCCTCCCG
GCATCCCTGCGCTACCGCGGGGAGTGCCTGGTGCAGACGGGCCACAACCG
CTGCGTGGTATCGGTGTTCGACTACCGCGTGGCTCCGGGGGAGTCGGTCC
GGTGGCAGGAGGAGGAGGTGGACTGGGGGGGCTATCTGCCGTGGCACGAG
CGGAGGGCGAGCCCCTCCCGGCATCCCTGCGCTACCGCGGGGAGTGCCTG
GTGCAGACGGGCCACAACCGCTGCGTGGTATCGGTGTTCGACTACCGCGT
GGCTCCGGGGGAGTCGGTCCGGTGGCAGGAGGAGGAGGTGGACTGGGGGG
GCTATCTGCCGTGGCACGAGGTTGTGTCAAAGGTATCCGAGGGGGACTGG
GAGTTCGTCCCCGATGGTCTGCAGGTGTGGCGACACTACCTCGAATGGGA
AGAAGAGGCCGCAGCAACGCCGTCACACTGAGTTGTGTCAAAGGTATCCG
AGGGGGACTGGGAGTTCGTCCCCGATGGTCTGCAGGTGTGGCGACACTAC
CTCGAATGGGAAGAAGAGGCCGCAGCAACGCCGTCACACTGA
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