mRNA_S-firma_F_contig1013.228.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1013.228.1
Unique NamemRNA_S-firma_F_contig1013.228.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1013.228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1013contigS-firma_F_contig1013:25761..26337 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size577
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815540.2511854-CDS-S-firma_F_contig1013:25760..260631622815540.2511854-CDS-S-firma_F_contig1013:25760..26063Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1013 25761..26063 +
1696949401.653914-CDS-S-firma_F_contig1013:25760..260631696949401.653914-CDS-S-firma_F_contig1013:25760..26063Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1013 25761..26063 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815540.2667477-UTR-S-firma_F_contig1013:26063..263371622815540.2667477-UTR-S-firma_F_contig1013:26063..26337Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1013 26064..26337 +
1696949401.6663008-UTR-S-firma_F_contig1013:26063..263371696949401.6663008-UTR-S-firma_F_contig1013:26063..26337Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1013 26064..26337 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1013.228.1prot_S-firma_F_contig1013.228.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1013 25761..26063 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1013.228.1

>prot_S-firma_F_contig1013.228.1 ID=prot_S-firma_F_contig1013.228.1|Name=mRNA_S-firma_F_contig1013.228.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=101bp
PLSKRFLVFSLSLFRHPAPRPLFQSAQTTSLYERFTFQPAPLSSALYCSS
RPVQGERPSPCCAPCRAHAPINAHSKAQTTCQQKTAHLPRLLSAAENVRM
*
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mRNA from alignment at S-firma_F_contig1013:25761..26337+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1013.228.1 ID=mRNA_S-firma_F_contig1013.228.1|Name=mRNA_S-firma_F_contig1013.228.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=577bp|location=Sequence derived from alignment at S-firma_F_contig1013:25761..26337+ (Sphaerotrichia firma ET2_F female)
CCACTCTCGAAACGCTTCTTGGTTTTTTCACTCTCTCTCTTCCGGCATCC
AGCCCCCCGCCCACTTTTTCAGAGCGCGCAAACAACCTCCCTTTACGAAC
GGTTTACATTCCAGCCCGCCCCGCTCTCCTCCGCCCTCTATTGTAGCTCT
CGACCAGTGCAAGGCGAGCGCCCGAGCCCATGCTGCGCTCCATGCCGTGC
TCATGCACCAATCAATGCCCACAGCAAAGCACAAACGACCTGTCAACAGA
AAACCGCCCATCTTCCACGGCTGCTCTCAGCGGCTGAGAACGTGAGAATG
TGAGAATGGCTGGGGGATCTCACCGCAACACGCATCAGGCGCGCACCCCT
TAGTACGCAGAAGCGCCCCCCCCCGCCGCGCCTATGGTTGAAAACAACCG
AAAACACAAACAATTCACCGGTACCGGTACGTACGTCCCACCCACGCCCT
GACAGCTACAATAGGTTACAATCAACCACCCCTCACTTGTTCCCCCCTTG
AAAAAACACAGAAGCTGGCAAAACAAAACATCGGCCACCCGCCGCCCCGC
TCCATCCAAGAAAAGTGGCAAACGACC
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Coding sequence (CDS) from alignment at S-firma_F_contig1013:25761..26337+

>mRNA_S-firma_F_contig1013.228.1 ID=mRNA_S-firma_F_contig1013.228.1|Name=mRNA_S-firma_F_contig1013.228.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=606bp|location=Sequence derived from alignment at S-firma_F_contig1013:25761..26337+ (Sphaerotrichia firma ET2_F female)
CCACTCTCGAAACGCTTCTTGGTTTTTTCACTCTCTCTCTTCCGGCATCC
AGCCCCCCGCCCACTTTTTCAGAGCGCGCAAACAACCTCCCTTTACGAAC
GGTTTACATTCCAGCCCGCCCCGCTCTCCTCCGCCCTCTATTGTAGCTCT
CGACCAGTGCAAGGCGAGCGCCCGAGCCCATGCTGCGCTCCATGCCGTGC
TCATGCACCAATCAATGCCCACAGCAAAGCACAAACGACCTGTCAACAGA
AAACCGCCCATCTTCCACGGCTGCTCTCAGCGGCTGAGAACGTGAGAATG
TGACCACTCTCGAAACGCTTCTTGGTTTTTTCACTCTCTCTCTTCCGGCA
TCCAGCCCCCCGCCCACTTTTTCAGAGCGCGCAAACAACCTCCCTTTACG
AACGGTTTACATTCCAGCCCGCCCCGCTCTCCTCCGCCCTCTATTGTAGC
TCTCGACCAGTGCAAGGCGAGCGCCCGAGCCCATGCTGCGCTCCATGCCG
TGCTCATGCACCAATCAATGCCCACAGCAAAGCACAAACGACCTGTCAAC
AGAAAACCGCCCATCTTCCACGGCTGCTCTCAGCGGCTGAGAACGTGAGA
ATGTGA
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