mRNA_S-firma_F_contig1013.227.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig1013.227.1 vs. uniprot
Match: D7FY03_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY03_ECTSI) HSP 1 Score: 590 bits (1521), Expect = 4.960e-174 Identity = 807/1735 (46.51%), Postives = 898/1735 (51.76%), Query Frame = 1
Query: 493 MLKRPNPYRKTRAAGTLDDLMFDMDKRRHTSFRFQNYQNFITDRPGKFDERYRQKLSWCALDEAETGQLDYLTEGLSPNGGRRMSTSSVGSSRAGGXXXXXXXXXXSLLSNQAQXXXXXXXXXXXXXXXXXXXXXXXXXXX----------DDAVRFACGGWLNAGSGDPPSGFLSPARFKSPPLP-SPGFMSPPICEGGG---TPKPPSGRSWKAPQFAIDSENRGPGVLLEDSPMHHSHD--QHHRRRPTGQDDAFPIVGSA-RSLSPPPGPRRHNMQWAGPSFPAGTPAGGLRRSTSSSSSG----------RRSSTSAFSLGTGSVRGPGSWTRASASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSASAGGCGVGGAVEGAGAT-EKVGDGGVEA--RTLLPTAEEGDEEQELAGGSGEEGEGGNPASSPIGV-----ESSPSADXXXXXXXXXGNSGSAAVDEAGGLPEDDAVE-AEAVGNPGREPSYGTVSSAMFMSGATDGARGSLLLAASNAFPRKSEESTYFESNASTAIPVPAARGSSSIGGIGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRLEDGGPRGXXXXXXXXXXRSAEVVVRAADPAVLVRPPRVGDGKLEHDKERRRGVASDLEAVIAELSRRKSLLAWEDGEGAASDPGNSPVR--EEGGRGTVA----------GQDEEEPHLSTGSQPLPKAEGNAMRGEPGEVDDAVAAVADGPADTDADAAAAPIATSIAEAAAVPVLVESDVTATSEDLVVALSAPRGDENAPQPQPLPAAASTLPPLSPPSVAAXXXXAPGDKAP-TAMVAPSGGPRSPGPAVPISVLASAAAVTAAKGFESVSSSSTRVGLSLRXXXXXXXXXXXXXXXXXXXXXXXXXXXSKDTDAAVVKTPSTARPGAEKKTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNARASSPRLADKA--------------------------------------------------------------------------------VAGVVGSPAAPRAAAPVAGYSAPTKSSKARVGGGDDSDAAGKGGPTXXXXXXXXXXXXXXXXXXXAHQRKH--------QQKQGPRGRE-EVGRGRDRARFPGDKGGRSGKGGRRVSSSAPPPELRNGG-GSARVEALCANIVTASDSVTSVQEQADGAPPLSGIPAVTGDASR------RHRRSLSAGVLPKSLGAGVMDSTLELADAALALSGPRTTAATSEAGKS---PTAGGRGGTRGRGKGASDRRSMAXXXXXXXXS----SPRKGKYQVKDSFNRLKGWINGGFTGNGGRKNSPATATKPRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------------GKGAVDSRNLTPNAAVDRAAARVEARRXXXXXXXXXXXXXXXXPFGRPGA-ATRSSPRTKAAGGTNPVRRRKSVSKKSSPSNRSPAAASLAGARGVVGASKRVTKPAAGTPAAAPAVEVGSTAQ-QRGRLPTRRLEVAMAGSSLSPSSSP--SPLPRRTLA---DDXXXXXXXXXXXXXXXXXXAVAVPRKCQAVPPSAAAXXXXXVALSPASERMAVVPPALSSTGPSARAKXXKXARSLGATVPALSHASSPR 5148
MLKRPNPYRK+RAAGTLDDLMFDMDKRRHTSFRFQNYQNFITDRPGKFDERYRQKLSWCALDE ETGQLDYLTEGLSP GGRRMSTSSVGSSR GGXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXX DDA + G DP +GFLSP+RF+ PP SP FMSPPI EGGG T K SGRSWKAPQFA+D +N GPGVLLE SP H H Q RRR D++FP+ G RSLSP P RHNMQWA S PAGT AG RRSS SAFSLGTG VRGPGSWTR XXXXXXXXXXXXX XXXXXXXXXXXXXXX +G G T E+ G A + L EE + E E G S P +GV E S + +A +E EDD V A + NPGRE SYGTV+S+ F SG D ARGSLL A+ N PRKS ESTYFESNAS A+ VP+A GG R XXXX + VV A DPA LVRPPRVGDGKLEHDKERR GVA+DLEAVIAEL+RRKSLLAWEDGEGA SDP SP R E GG G V G+ E+E LS A A RG VDD VA A DA P + AV S + VV S+ GDEN +P P P A A D A T M+ PS PR G ++ LASAAA A GF+S SSSST L L + +A +P +A P A+ A XXXXXXXXXXXXXXXXXXXXXXXXXX A+A SPR A K+ PRAA AGYSAPTKSSKARVG XXXXXXXXXXXXXXXXXXX Q + +++Q PR +E E RGRDR R P + G + +G RR+SSSAPPPELR+GG SARVE +CA+I+T SD +TS QEQ +GAPPLSG+PA + ++ HRRS SAG+LP+S+ GVMD +ELADAA+ LSG RT+ +E G++ A G RG+G G+ DRRSM XXXXXX SPRKGKYQVKDSFNRLKGWINGGFTGNGGRKN+ + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX G DSRNL + AV+RAAARVEARR XXXXXXXXXX A + SPR AG +RR K + S S SP++A+ A AGT AAP E + + RG SPL R ++ XXXXXXXXXA +PRK +AVP XXXXX SPASERMAVVPPA SSTGPSAR K K ARSLGAT+P LS AS PR
Sbjct: 1 MLKRPNPYRKSRAAGTLDDLMFDMDKRRHTSFRFQNYQNFITDRPGKFDERYRQKLSWCALDE-ETGQLDYLTEGLSPKGGRRMSTSSVGSSRTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCDDDAASTSTRGE------DPAAGFLSPSRFRLPPSSTSPRFMSPPIGEGGGGGGTAKAHSGRSWKAPQFAMDLDNHGPGVLLEHSPTRHGHTGLQQQRRRAAASDESFPVSGGGTRSLSPSPALHRHNMQWARQS-PAGTGAGAGAMKNGGXXXXXXXXXXXXXXRRSSNSAFSLGTGPVRGPGSWTRGXXXXXXXXXXXXXXXXVSSGXXXXXXXXXXXXXXXXXXXXXXXP---EQGRGRTAERAEQGCARAPPQQLTSAPEEDEAENEERGES--------PVQPRVGVDDEVTEVGASGGTDVCPGAAASVAATAKPEEKSWAGEDDKVGGAASTANPGREASYGTVTSSAFCSGVGD-ARGSLL-ASFNTLPRKSLESTYFESNASVAVTVPSASXXXXXXXXXXVVWGGAGEPLSASGGDTGAGRTPAATGGQGEGAVKAAEKEEEQAQGPKKGGKSGGGGRSRXXXXMARGPGADMVVGHAVDPAALVRPPRVGDGKLEHDKERRLGVANDLEAVIAELNRRKSLLAWEDGEGAVSDPCESPARATESGGGGDVGAGKETRQEEKGEVEDEHRLSARGTLQASAGSGAERGR---VDDEPVRVARVLASEDAFGERKPNEATPLAGQAVEPAAASLAPGVLQTAVVPSSSFGGDEN----KPPPLTEEPSPXXXXXXXAGADAGAAADVAESTTMLPPSAAPRGAGASLSARTLASAAAAAEATGFDSCSSSSTTAQLGL------PKERVEARADGAAAGRVGGRGWRQGREATAPVSPRSA-PTAKATWAGVSTTLTKENAGDRRVKASSAPRXXXXXXXXXXXXXXXXXXXXXXXXXXA-------GAKAGSPRTAAKSGFASAQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRAAPAPAGYSAPTKSSKARVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLRRVGSXXXXQKERQSPRSKEAEDRRGRDRVRGPEESNGGASRGCRRLSSSAPPPELRDGGLSSARVEGICADIITPSDLLTSAQEQVEGAPPLSGVPASSSSSTTPRPARGHHRRSTSAGMLPRSIDEGVMDPAVELADAAMTLSGVRTSGGAAEDGRARRGAVARGTARERGKGGGSFDRRSMVGGXXXXXXXXASPSPRKGKYQVKDSFNRLKGWINGGFTGNGGRKNNSSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRARAVDKSVDKRSASAVGGXXXXXXXXXXXXXXXTAGVGNRNGDSRNLNASTAVERAAARVEARRAAERDAXXXXXXXXXXXXXXGTAKGAKPSPRAAVAGA---IRRNKPHKRTPSGSRASPSSATXXXXXXXXKAGGVGAPAKAGT--AAPTTESAAGSDPHRGXXXXXXXXXXXXXXXXXXXXXXXLSPLATRLSPAHKEEVTAAVKAAAXXXXXXXXXAGVLPRKVRAVPXXXXXXXXXXXXXSPASERMAVVPPAPSSTGPSARFKTSKAARSLGATIPTLSPASLPR 1688 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1013.227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1013.227.1 >prot_S-firma_F_contig1013.227.1 ID=prot_S-firma_F_contig1013.227.1|Name=mRNA_S-firma_F_contig1013.227.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=1673bp MLKRPNPYRKTRAAGTLDDLMFDMDKRRHTSFRFQNYQNFITDRPGKFDEback to top mRNA from alignment at S-firma_F_contig1013:14107..25078+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig1013.227.1 ID=mRNA_S-firma_F_contig1013.227.1|Name=mRNA_S-firma_F_contig1013.227.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=10972bp|location=Sequence derived from alignment at S-firma_F_contig1013:14107..25078+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig1013:14107..25078+ >mRNA_S-firma_F_contig1013.227.1 ID=mRNA_S-firma_F_contig1013.227.1|Name=mRNA_S-firma_F_contig1013.227.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=10038bp|location=Sequence derived from alignment at S-firma_F_contig1013:14107..25078+ (Sphaerotrichia firma ET2_F female)back to top |