mRNA_S-firma_F_contig10129.224.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10129.224.1 vs. uniprot
Match: D8LIH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIH2_ECTSI) HSP 1 Score: 538 bits (1385), Expect = 2.140e-184 Identity = 261/278 (93.88%), Postives = 268/278 (96.40%), Query Frame = 1
Query: 127 KRVDLGVLRTPANGKWRLVSKHFLRPGGSCNITSASFHATRRLLVLGFSSGVFGLYEMPDCSAIHTLSVGQAGIGTCDVSATGDWLAFGCARLGQLLVWEWQSETYVLKQQGHGYGLNCAAFGASGSVCATGGDDSKVKLWSTTSGFCFVTFSEHEAPVTAVRFTPNASAVLSASLDGTVRAHDLVRYKNFRTLVTPQPTQLTSLALDDSGEVVVAGAMDPFEVYVWSLQTGKLLDVLAGHEAPLSELSFSPNQGVLASASWDGTVKLWDVFKSECIE 960
+R D G LRTPA GKWRLVSKHFLRPGGSCNITSASFHA R LLVLGFSSGVFGLYEMPDC+AIHTLSVGQAGIGTCDVS TGDWLAFGCARLGQLLVWEWQSETYVLKQQGHGYGLNCAAFGA+GSVCATGGDDSKVKLWSTTSGFCFVTF+EHEAPVTAVRFTPNASAV+SASLDGTVRAHDLVRYKNFRTLVTPQP QLTSLALD SGEVVVAGAMDPFEVYVWSLQTG+LLDVLAGHEAPLSEL FSP+QGVLASASWDGTVKLWDVFKSECIE
Sbjct: 286 RRPDFGELRTPAFGKWRLVSKHFLRPGGSCNITSASFHAKRSLLVLGFSSGVFGLYEMPDCTAIHTLSVGQAGIGTCDVSTTGDWLAFGCARLGQLLVWEWQSETYVLKQQGHGYGLNCAAFGATGSVCATGGDDSKVKLWSTTSGFCFVTFTEHEAPVTAVRFTPNASAVVSASLDGTVRAHDLVRYKNFRTLVTPQPAQLTSLALDGSGEVVVAGAMDPFEVYVWSLQTGRLLDVLAGHEAPLSELCFSPSQGVLASASWDGTVKLWDVFKSECIE 563
BLAST of mRNA_S-firma_F_contig10129.224.1 vs. uniprot
Match: A0A6H5LCN5_9PHAE (Utp12 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCN5_9PHAE) HSP 1 Score: 536 bits (1381), Expect = 2.740e-180 Identity = 259/278 (93.17%), Postives = 269/278 (96.76%), Query Frame = 1
Query: 127 KRVDLGVLRTPANGKWRLVSKHFLRPGGSCNITSASFHATRRLLVLGFSSGVFGLYEMPDCSAIHTLSVGQAGIGTCDVSATGDWLAFGCARLGQLLVWEWQSETYVLKQQGHGYGLNCAAFGASGSVCATGGDDSKVKLWSTTSGFCFVTFSEHEAPVTAVRFTPNASAVLSASLDGTVRAHDLVRYKNFRTLVTPQPTQLTSLALDDSGEVVVAGAMDPFEVYVWSLQTGKLLDVLAGHEAPLSELSFSPNQGVLASASWDGTVKLWDVFKSECIE 960
+R+D G LRTPA GKW+LVSKHFLRPGGSCNITSASFHA R LLVLGFSSGVFGLYEMPDC+AIHTLSVGQAGIGTCDVS TGDWLAFGCARLGQLLVWEWQSETYVLKQQGHGYGLNCAAFGA+GSVCATGGDDSKVKLWST+SGFCFVTF+EHEAPVTAVRFTPNASAV+SASLDGTVRAHDLVRYKNFRTLVTPQP QLTSLALD SGEVVVAGAMDPFEVYVWSLQTG+LLDVLAGHEAPLSEL FSP+QGVLASASWDGTVKLWDVFKSECIE
Sbjct: 280 RRLDFGKLRTPAFGKWKLVSKHFLRPGGSCNITSASFHAKRSLLVLGFSSGVFGLYEMPDCTAIHTLSVGQAGIGTCDVSTTGDWLAFGCARLGQLLVWEWQSETYVLKQQGHGYGLNCAAFGATGSVCATGGDDSKVKLWSTSSGFCFVTFTEHEAPVTAVRFTPNASAVVSASLDGTVRAHDLVRYKNFRTLVTPQPAQLTSLALDGSGEVVVAGAMDPFEVYVWSLQTGRLLDVLAGHEAPLSELCFSPSQGVLASASWDGTVKLWDVFKSECIE 557
BLAST of mRNA_S-firma_F_contig10129.224.1 vs. uniprot
Match: A0A7S3HPP3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HPP3_9STRA) HSP 1 Score: 340 bits (871), Expect = 1.280e-106 Identity = 160/277 (57.76%), Postives = 205/277 (74.01%), Query Frame = 1
Query: 136 DLGVLRTPANGKWRLVSKHFLRPGGSCNITSASFHATRRLLVLGFSSGVFGLYEMPDCSAIHTLSVGQAGIGTCDVSATGDWLAFGCARLGQLLVWEWQSETYVLKQQGHGYGLNCAAFGASGSVCATGGDDSKVKLWSTTSGFCFVTFSEHEAPVTAVRFTPNA--SAVLSASLDGTVRAHDLVRYKNFRTLVTPQPTQLTSLALDDSGEVVVAGAMDPFEVYVWSLQTGKLLDVLAGHEAPLSELSFSPNQGVLASASWDGTVKLWDVFKSECIE 960
+L +++T KW L + FL + ++ S F+ LLV+GF SGVFGLYEMP C +H LSV + + ++ TG+WLA G + LGQLLVWEW+SE+YVLKQQGH YGLN + + G ATGG+D KVK+W+ SGFCF+TFSEH APVT V+F A++SASLDGTVRAHDL+RYKNFRTL TP P Q T LA+D SGE+V AGA+DPF+++VWSLQTG+L+DVL+GHE P++ L FS + G+LAS SWDGT+KLWDV+K+EC E
Sbjct: 265 ELALVKTRRTSKWVLKEREFLWDPHT-HVASVDFNKLSNLLVVGFDSGVFGLYEMPGCVNVHRLSVSNHSVNSVTINPTGEWLAIGSSELGQLLVWEWKSESYVLKQQGHLYGLNAMDYSSDGQFIATGGEDGKVKIWNAFSGFCFITFSEHIAPVTGVKFVGKGLGKALISASLDGTVRAHDLLRYKNFRTLTTPDPVQFTCLAVDSSGEIVCAGALDPFQIFVWSLQTGRLVDVLSGHEGPIACLDFSKDSGLLASGSWDGTLKLWDVYKNECTE 540
BLAST of mRNA_S-firma_F_contig10129.224.1 vs. uniprot
Match: A0A1Y1YMM0_9FUNG (WD repeat protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YMM0_9FUNG) HSP 1 Score: 339 bits (869), Expect = 6.260e-105 Identity = 154/267 (57.68%), Postives = 209/267 (78.28%), Query Frame = 1
Query: 166 GKWRLVSKHFLRPGGSCNITSASFHATRRLLVLGFSSGVFGLYEMPDCSAIHTLSVGQAGIGTCDVSATGDWLAFGCARLGQLLVWEWQSETYVLKQQGHGYGLNCAAFGASGSVCATGGDDSKVKLWSTTSGFCFVTFSEHEAPVTAVRFTPNASAVLSASLDGTVRAHDLVRYKNFRTLVTPQPTQLTSLALDDSGEVVVAGAMDPFEVYVWSLQTGKLLDVLAGHEAPLSELSFSPNQGVLASASWDGTVKLWDVF-KSECIEA 963
GKW + +KH+ + + + SA FH T LL++GF++G+FG++E+PD + IHTLS+ Q I T ++A+G+WLA G ++LGQLLVWEWQSE+YVLKQQGH Y +NC A+ + G ATGGDD KVK+W+TTSGFCFVTFS+H + V AV FT N+ VLSAS DGTVRA+DL+RY+NFRT +P P Q ++L++D SGE+V AG+MD FE+YVWS+QTGKLLDV++GHE P+S LSF+P ++AS SWD TV+LWD+F + + +E+
Sbjct: 233 GKWTISAKHYFKQNNARVVCSA-FHQTSNLLLVGFTTGIFGIWELPDFTNIHTLSISQNRIDTASINASGEWLALGSSKLGQLLVWEWQSESYVLKQQGHFYDMNCLAYSSDGQYIATGGDDGKVKIWNTTSGFCFVTFSDHSSGVVAVEFTKNSQVVLSASRDGTVRAYDLLRYRNFRTFTSPSPVQFSALSVDPSGEIVCAGSMDTFEIYVWSIQTGKLLDVVSGHEGPVSSLSFNPTGTLMASGSWDQTVRLWDIFGRGKNVES 498
BLAST of mRNA_S-firma_F_contig10129.224.1 vs. uniprot
Match: A0A7S2KDA0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KDA0_9STRA) HSP 1 Score: 338 bits (867), Expect = 2.830e-104 Identity = 163/268 (60.82%), Postives = 200/268 (74.63%), Query Frame = 1
Query: 151 RTPANGKWRLVSKHFLRPGGSCNITSASFHATRRLLVLGFSSGVFGLYEMPDCSAIHTLSVGQAGIGTCDVSATGDWLAFGCARLGQLLVWEWQSETYVLKQQGHGYGLNCAAFGASGS-VCATGGDDSKVKLWSTTSGFCFVTFSEHEAPVTAVRFTPNASAVLSASLDGTVRAHDLVRYKNFRTLVTPQPTQLTSLALDDSGEVVVAGAMDPFEVYVWSLQTGKLLDVLAGHEAPLSELSFSPNQGVLASASWDGTVKLWDVFKSE 951
R+ NG+WR KH+ G+ +T + + + LLV+GFSSG+F LYEMP C+ +HTLS+ I + ++ATG+WLAFGC LGQLLVWEWQSETYVLKQQGH Y + A+ GS TGG+D KVK+W+T +GFCFVTF+EH AP+TA+ F N VLSASLDGTVRAHDLVRY+NFRTL TP P Q S+A D SGE+V AG ++ FE+YVWSLQTGK+L+VL GH P+SELSF+P QG LASASWDGT K+WDVFK
Sbjct: 279 RSLLNGRWRRSRKHYFNQQGT-EVTCTAMNLSG-LLVVGFSSGIFALYEMPSCTNVHTLSISNRRIHSVALNATGEWLAFGCPELGQLLVWEWQSETYVLKQQGHSYAMRQMAYSPDGSQFVVTGGEDGKVKMWNTDTGFCFVTFAEHTAPITALAFA-NPKVVLSASLDGTVRAHDLVRYRNFRTLTTPSPVQFCSMATDPSGEIVCAGTLETFEIYVWSLQTGKVLEVLTGHRGPISELSFNPEQGKLASASWDGTTKVWDVFKKN 543
BLAST of mRNA_S-firma_F_contig10129.224.1 vs. uniprot
Match: U9UQ22_RHIID (Utp12 domain-containing protein n=9 Tax=Rhizophagus TaxID=1129544 RepID=U9UQ22_RHIID) HSP 1 Score: 336 bits (862), Expect = 2.950e-104 Identity = 155/259 (59.85%), Postives = 199/259 (76.83%), Query Frame = 1
Query: 169 KWRLVSKHFLRPGGSCNITSASFHATRRLLVLGFSSGVFGLYEMPDCSAIHTLSVGQAGIGTCDVSATGDWLAFGCARLGQLLVWEWQSETYVLKQQGHGYGLNCAAFGASGSVCATGGDDSKVKLWSTTSGFCFVTFSEHEAPVTAVRFTPNASAVLSASLDGTVRAHDLVRYKNFRTLVTPQPTQLTSLALDDSGEVVVAGAMDPFEVYVWSLQTGKLLDVLAGHEAPLSELSFSPNQGVLASASWDGTVKLWDVFK 945
KW +VS+H+ S + +++HA +LLV+GFSSG+FG++EMP+ + IHTLS+ Q I + ++ATG+WLAFG ++LGQLLVWEWQSE+YVLKQQGH Y +N ++ A G ATGGDD KVK+W+T SGFCFVTFSEH + V+ V F N + SASLDGTVRA DL+RY+NFRT +P P Q T+LA+D SGE+V AG+MD FE++VWS+QTGKLLDVLAGHE P+S L+FSP+ LAS SWDGT + WDVF
Sbjct: 246 KWVIVSRHYFNQS-SAKVVCSAYHAASKLLVIGFSSGIFGIWEMPEFNNIHTLSISQKRIDSVTINATGEWLAFGSSKLGQLLVWEWQSESYVLKQQGHYYDMNTLSYSADGQNIATGGDDGKVKVWNTVSGFCFVTFSEHSSGVSVVEFAKNGQVLFSASLDGTVRAFDLIRYRNFRTFTSPSPVQFTALAVDPSGEIVCAGSMDTFEIFVWSVQTGKLLDVLAGHEGPISSLAFSPSGIELASGSWDGTTRTWDVFN 503
BLAST of mRNA_S-firma_F_contig10129.224.1 vs. uniprot
Match: A0A1Y1I969_KLENI (WD40-repeat-containing subunit of the 18S rRNA processing complex n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I969_KLENI) HSP 1 Score: 338 bits (866), Expect = 3.660e-104 Identity = 158/267 (59.18%), Postives = 201/267 (75.28%), Query Frame = 1
Query: 151 RTPANGKWRLVSKHFLRPGGSCNITSASFHATRRLLVLGFSSGVFGLYEMPDCSAIHTLSVGQAGIGTCDVSATGDWLAFGCARLGQLLVWEWQSETYVLKQQGHGYGLNCAAFGASGSVCATGGDDSKVKLWSTTSGFCFVTFSEHEAPVTAVRFTPNASAVLSASLDGTVRAHDLVRYKNFRTLVTPQPTQLTSLALDDSGEVVVAGAMDPFEVYVWSLQTGKLLDVLAGHEAPLSELSFSPNQGVLASASWDGTVKLWDVFKSE 951
R G WRL KHF + +T A +H LLV GFSSGVFGLY++PD +A+H LSV + + + S+ G+WL GCA+LGQLLVWEW+SETYVLKQQGH Y +N A+ G + ATG DD+K+K+W+ SGFCFVTF+EH+ P+TAV F P+ AVLSASLDGTVRA DLVRY+NFRT +P P Q SLA+D+SGEVVVAG++D F+++VWS++TG+LLDVL+GHE P+ LSFSP +LASASWDGTV+LW+VF +
Sbjct: 273 RPRGRGSWRLEGKHFFHQ--AAKLTCADYHPGLNLLVAGFSSGVFGLYQLPDFAALHLLSVSKEALTSVAFSSNGEWLGLGCAKLGQLLVWEWRSETYVLKQQGHYYDVNTLAYAGDGQLIATGADDAKLKIWNAGSGFCFVTFTEHKMPITAVAFAPSGHAVLSASLDGTVRAFDLVRYRNFRTFTSPSPAQFVSLAVDNSGEVVVAGSLDTFQLFVWSMKTGRLLDVLSGHEGPIYGLSFSPTHELLASASWDGTVRLWNVFSGK 537
BLAST of mRNA_S-firma_F_contig10129.224.1 vs. uniprot
Match: A7RS02_NEMVE (Predicted protein n=4 Tax=Nematostella vectensis TaxID=45351 RepID=A7RS02_NEMVE) HSP 1 Score: 333 bits (855), Expect = 2.550e-103 Identity = 156/261 (59.77%), Postives = 197/261 (75.48%), Query Frame = 1
Query: 169 KWRLVSKHFLRPGGSCNITSASFHATRRLLVLGFSSGVFGLYEMPDCSAIHTLSVGQAGIGTCDVSATGDWLAFGCARLGQLLVWEWQSETYVLKQQGHGYGLNCAAFGASGSVCATGGDDSKVKLWSTTSGFCFVTFSEHEAPVTAVRFTPNASAVLSASLDGTVRAHDLVRYKNFRTLVTPQPTQLTSLALDDSGEVVVAGAMDPFEVYVWSLQTGKLLDVLAGHEAPLSELSFSPNQGVLASASWDGTVKLWDVFKSE 951
KW+ KHF ITS + H ++L++GFS+GVF ++E+PD + I TLS+ Q I V+ TG+WLAFGC LGQLLVWEWQSE+Y+LKQQGH Y +N A+ G+ ATGGDD KVKLW+T +GFCFVTF EH A VTAV F+PN VLSASLDGTVRA DL RY+NFRT +P+P Q ++LALD SGEVV AG+ D FE++VWS+QTG+LL+VLAGHEAP+S L+FSP+ VL S +WD TV+LW+VF+S+
Sbjct: 239 KWKKGPKHFFEKENFTEITSCALHKATQVLIVGFSNGVFTIHELPDFNLIQTLSISQQTISAVAVNPTGEWLAFGCTSLGQLLVWEWQSESYILKQQGHYYDMNVLAYSPDGNYIATGGDDGKVKLWNTMTGFCFVTFHEHSASVTAVTFSPNGQVVLSASLDGTVRAFDLNRYRNFRTFASPRPAQFSTLALDSSGEVVAAGSRDTFEIFVWSIQTGRLLEVLAGHEAPVSSLAFSPSHPVLISGAWDKTVRLWNVFESK 499
BLAST of mRNA_S-firma_F_contig10129.224.1 vs. uniprot
Match: A0A5J4XW46_9CHLO (WD40 repeat n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XW46_9CHLO) HSP 1 Score: 333 bits (854), Expect = 3.910e-103 Identity = 156/264 (59.09%), Postives = 200/264 (75.76%), Query Frame = 1
Query: 160 ANGKWRLVSKHFLRPGGSCNITSASFHATRRLLVLGFSSGVFGLYEMPDCSAIHTLSVGQAGIGTCDVSATGDWLAFGCARLGQLLVWEWQSETYVLKQQGHGYGLNCAAFGASGSVCATGGDDSKVKLWSTTSGFCFVTFSEHEAPVTAVRFTPNASAVLSASLDGTVRAHDLVRYKNFRTLVTPQPTQLTSLALDDSGEVVVAGAMDPFEVYVWSLQTGKLLDVLAGHEAPLSELSFSPNQGVLASASWDGTVKLWDVFKSE 951
A G+WRL +KHF G+ +T+ +H +LV+GFS+G+F L+E+P IHTLSV ++ I +A GDW+A GCA LGQLLVWEW+SE+Y+LKQQGH Y + +AF G ATG DDSKVK+W+ SGFCFVTFSEH APVTAV F P+ S V+SASLDGTVRA DLVRY+NFRT+ +P P Q SLA+D +GEV+ AG++D F+VYVWS++TG++LDVLAGHE P++ L+FSP Q +LASASWD TV+ WDVF +
Sbjct: 195 AGGRWRLGAKHFCNQRGA-KVTAVDYHRATGMLVVGFSNGIFDLFELPKFDNIHTLSVSRSAINAITFNAAGDWVALGCAALGQLLVWEWRSESYILKQQGHYYDIATSAFSPDGLNLATGADDSKVKIWNMQSGFCFVTFSEHSAPVTAVAFLPSGSVVVSASLDGTVRAFDLVRYRNFRTMTSPHPVQFVSLAVDPAGEVICAGSLDTFQVYVWSVRTGRMLDVLAGHEGPVAGLAFSPTQFLLASASWDKTVRTWDVFSGK 457
BLAST of mRNA_S-firma_F_contig10129.224.1 vs. uniprot
Match: A0A162URC2_PHYB8 (Utp12 domain-containing protein n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A162URC2_PHYB8) HSP 1 Score: 334 bits (856), Expect = 1.360e-102 Identity = 156/265 (58.87%), Postives = 200/265 (75.47%), Query Frame = 1
Query: 169 KWRLVSKHFLRPGGSCNITSASFHATRRLLVLGFSSGVFGLYEMPDCSAIHTLSVGQAGIGTCDVSATGDWLAFGCARLGQLLVWEWQSETYVLKQQGHGYGLNCAAFGASGSVCATGGDDSKVKLWSTTSGFCFVTFSEHEAPVTAVRFTPNASAVLSASLDGTVRAHDLVRYKNFRTLVTPQPTQLTSLALDDSGEVVVAGAMDPFEVYVWSLQTGKLLDVLAGHEAPLSELSFSPNQGVLASASWDGTVKLWDVF-KSECIE 960
+WR++ KH+ + + S F A L+V+GFS+G+FGLYE+P + IHTLS+ Q I T ++ TG+WLAFG ARLGQLLVWEWQSETYVLKQQGH Y +N ++ A G ATGGDD KVK+W+TTSGFC+VTFSEH++ V+AV F + SASLDGTVRA DLVRY+NFRT +P P Q +SLA+D SG++V AG MD FE+YVWS+QTGKLLD+LAGH+ P+S L+FSP +LAS+SWD T + WDVF +++ IE
Sbjct: 289 RWRIMKKHYFMQTPA-KVKSCEFFAPSNLMVVGFSNGIFGLYEVPSFNTIHTLSISQKNIDTVTINRTGEWLAFGSARLGQLLVWEWQSETYVLKQQGHFYDMNSLSYSADGQTLATGGDDGKVKVWNTTSGFCYVTFSEHKSGVSAVEFAKQGKVLFSASLDGTVRAFDLVRYRNFRTFTSPNPVQFSSLAVDPSGDIVCAGTMDTFEIYVWSVQTGKLLDILAGHDGPVSSLAFSPTDMLLASSSWDHTARTWDVFGRNKVIE 552 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10129.224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10129.224.1 >prot_S-firma_F_contig10129.224.1 ID=prot_S-firma_F_contig10129.224.1|Name=mRNA_S-firma_F_contig10129.224.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=306bp MEENSDESSDADGSSSEEEEEEEEEKRVDLGVLRTPANGKWRLVSKHFLRback to top mRNA from alignment at S-firma_F_contig10129:540..5236- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10129.224.1 ID=mRNA_S-firma_F_contig10129.224.1|Name=mRNA_S-firma_F_contig10129.224.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=4697bp|location=Sequence derived from alignment at S-firma_F_contig10129:540..5236- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10129:540..5236- >mRNA_S-firma_F_contig10129.224.1 ID=mRNA_S-firma_F_contig10129.224.1|Name=mRNA_S-firma_F_contig10129.224.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1836bp|location=Sequence derived from alignment at S-firma_F_contig10129:540..5236- (Sphaerotrichia firma ET2_F female)back to top |