mRNA_S-firma_F_contig10128.223.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10128.223.1
Unique NamemRNA_S-firma_F_contig10128.223.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig10128.223.1 vs. uniprot
Match: D8LF08_ECTSI (Diphthine methyl ester synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF08_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 3.520e-21
Identity = 50/90 (55.56%), Postives = 63/90 (70.00%), Query Frame = 1 
Query:    1 SDSVYATAKDEDVSFLVVGDPFRPNTMPINYVFTKAKELGVQVEVIQNVSTSCSNLSCGLKGNKFGKPVSIPRWNEHSKPDGFFDAIVVN 270
            +DS+YATAKDEDVSFLVVGDP    T     +  +A+ELGV+VEVI N S   +  SCGL+   FG+ VSIP WNE+ +PD F++ I VN
Sbjct:   66 ADSIYATAKDEDVSFLVVGDPLCATTH--TDLIIRARELGVKVEVIHNASVMGAVASCGLQLYNFGQTVSIPLWNENWEPDSFYEKIRVN 153
[Close]
BLAST of mRNA_S-firma_F_contig10128.223.1 vs. uniprot
Match: A0A6G0WFG2_9STRA (Diphthine methyl ester synthase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WFG2_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 6.690e-15
Identity = 40/87 (45.98%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:   10 VYATAKDEDVSFLVVGDPFRPNTMPINYVFTKAKELGVQVEVIQNVSTSCSNLSCGLKGNKFGKPVSIPRWNEHSKPDGFFDAIVVN 270
            +YA AK+++V+FLVVGDPF   T   + +  +AKE+GVQVEVI N S   +  +CGL+   +G+ VSIP + +  +PD F+D I  N
Sbjct:   69 IYANAKEQNVAFLVVGDPFCATTH--SDLILRAKEIGVQVEVIHNASVMGAAGACGLQLYHYGQTVSIPFFTDEWRPDSFYDKIAFN 153
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BLAST of mRNA_S-firma_F_contig10128.223.1 vs. uniprot
Match: G8Y1B0_PICSO (Diphthine methyl ester synthase n=2 Tax=Pichia sorbitophila (strain ATCC MYA-4447 / BCRC 22081 / CBS 7064 / NBRC 10061 / NRRL Y-12695) TaxID=559304 RepID=G8Y1B0_PICSO)

HSP 1 Score: 77.0 bits (188), Expect = 8.930e-15
Identity = 41/93 (44.09%), Postives = 61/93 (65.59%), Query Frame = 1 
Query:    1 SDSVYATAKDEDVSFLVVGDPFRPNTMPINYVFTKAKELGVQVEVIQNVSTSCSNLSCGLKGNKFGKPVSIPRWNEHSKPDGFFDAIVVNGAV 279
            SD++ A AKD+DV+FLVVGDPF   T   + +  +A+ELG+QVE I N S   +  +CGL+  +FG+ VS+  + +  KPD F+D I+ N  +
Sbjct:   66 SDTILADAKDDDVAFLVVGDPFGATTH--SDLIIRARELGIQVETIHNASVMNAVGACGLQLYQFGQTVSLVFFTDTWKPDSFYDKIMENRRI 156
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BLAST of mRNA_S-firma_F_contig10128.223.1 vs. uniprot
Match: A0A024TAC1_9STRA (Diphthine methyl ester synthase n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024TAC1_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.490e-14
Identity = 38/87 (43.68%), Postives = 59/87 (67.82%), Query Frame = 1 
Query:   10 VYATAKDEDVSFLVVGDPFRPNTMPINYVFTKAKELGVQVEVIQNVSTSCSNLSCGLKGNKFGKPVSIPRWNEHSKPDGFFDAIVVN 270
            +YA AKD++++FLVVGDPF   T   + +  +A+E+G +VEVI N S   +  +CGL+   +G+ VSIP +N++ +PD F+D I  N
Sbjct:   69 IYANAKDQNIAFLVVGDPFCATTH--SDLILRAQEIGAKVEVIHNASVMGAAGACGLQLYHYGQTVSIPFFNDNWRPDSFYDKIAFN 153
[Close]
BLAST of mRNA_S-firma_F_contig10128.223.1 vs. uniprot
Match: A0A484DUV5_BRELC (Diphthine methyl ester synthase n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DUV5_BRELC)

HSP 1 Score: 75.5 bits (184), Expect = 2.860e-14
Identity = 40/90 (44.44%), Postives = 57/90 (63.33%), Query Frame = 1 
Query:    1 SDSVYATAKDEDVSFLVVGDPFRPNTMPINYVFTKAKELGVQVEVIQNVSTSCSNLSCGLKGNKFGKPVSIPRWNEHSKPDGFFDAIVVN 270
            +D ++A AK+ DV+FLVVGDP    T     +  +AK+LG+QVEVI N S   +  SCGL+   FG+ VSIP + +  +PD F++ I  N
Sbjct:   66 ADEIFADAKNNDVAFLVVGDPLCATTHAD--LILRAKKLGIQVEVIHNASVMGAAASCGLQLYSFGQTVSIPFFRDEWRPDSFYEKIKYN 153
[Close]
BLAST of mRNA_S-firma_F_contig10128.223.1 vs. uniprot
Match: A0A662X8L2_9STRA (Diphthine methyl ester synthase (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X8L2_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 4.930e-14
Identity = 37/87 (42.53%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:    1 SDSVYATAKDEDVSFLVVGDPFRPNTMPINYVFTKAKELGVQVEVIQNVSTSCSNLSCGLKGNKFGKPVSIPRWNEHSKPDGFFDAI 261
            +D ++  AKD+DV+FLVVGDP    T   + +  +A ELG++VEV+ N S   +  +CGL+   FG+ VSIP + E  +PD F++ I
Sbjct:   66 ADQIFEDAKDDDVAFLVVGDPLCATTH--SDLIIRANELGIKVEVVHNASVMGAAGACGLQLYSFGQTVSIPFFREEWRPDSFYEKI 150
[Close]
BLAST of mRNA_S-firma_F_contig10128.223.1 vs. uniprot
Match: A0A485K982_9STRA (Aste57867_2532 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K982_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 7.050e-14
Identity = 38/87 (43.68%), Postives = 59/87 (67.82%), Query Frame = 1 
Query:   10 VYATAKDEDVSFLVVGDPFRPNTMPINYVFTKAKELGVQVEVIQNVSTSCSNLSCGLKGNKFGKPVSIPRWNEHSKPDGFFDAIVVN 270
            +YA AKD++++FLVVGDPF   T   + +  +A+E+G +VEVI N S   +  +CGL+   +G+ VSIP ++E+ +PD F+D I  N
Sbjct:  403 IYANAKDQNIAFLVVGDPFCATTH--SDLILRAQEIGAKVEVIHNASVMGAAGACGLQLYHYGQTVSIPFFSENWRPDSFYDKIAFN 487
[Close]
BLAST of mRNA_S-firma_F_contig10128.223.1 vs. uniprot
Match: H3GB03_PHYRM (Diphthine methyl ester synthase n=24 Tax=Phytophthora TaxID=4783 RepID=H3GB03_PHYRM)

HSP 1 Score: 73.9 bits (180), Expect = 9.530e-14
Identity = 39/90 (43.33%), Postives = 58/90 (64.44%), Query Frame = 1 
Query:    1 SDSVYATAKDEDVSFLVVGDPFRPNTMPINYVFTKAKELGVQVEVIQNVSTSCSNLSCGLKGNKFGKPVSIPRWNEHSKPDGFFDAIVVN 270
            +D ++A AKD+DV+FLVVGDP    T   + +  +AKEL ++VEVI N S   +  +CGL+   FG+ VSIP + +  +PD F++ I  N
Sbjct:   66 ADQIFADAKDDDVAFLVVGDPLCATTH--SDLILRAKELDIRVEVIHNASVMGAAGACGLQLYSFGQTVSIPFFRDEWRPDSFYEKIQYN 153
[Close]
BLAST of mRNA_S-firma_F_contig10128.223.1 vs. uniprot
Match: A0A662Y364_9STRA (Diphthine methyl ester synthase (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y364_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 9.550e-14
Identity = 38/90 (42.22%), Postives = 57/90 (63.33%), Query Frame = 1 
Query:    1 SDSVYATAKDEDVSFLVVGDPFRPNTMPINYVFTKAKELGVQVEVIQNVSTSCSNLSCGLKGNKFGKPVSIPRWNEHSKPDGFFDAIVVN 270
            +D ++  AKD+DV+FLVVGDP    T   + +  +A ELG++VEV+ N S   +  +CGL+   FG+ VSIP + E  +PD F++ I  N
Sbjct:   85 ADQIFEHAKDDDVAFLVVGDPLCATTH--SDLIIRANELGIKVEVVHNASVMGAAGACGLQLYSFGQTVSIPFFREEWRPDSFYEKIQYN 172
[Close]
BLAST of mRNA_S-firma_F_contig10128.223.1 vs. uniprot
Match: UPI000C20073A (diphthine methyl ester synthase n=1 Tax=Onthophagus taurus TaxID=166361 RepID=UPI000C20073A)

HSP 1 Score: 73.6 bits (179), Expect = 1.280e-13
Identity = 41/90 (45.56%), Postives = 54/90 (60.00%), Query Frame = 1 
Query:    1 SDSVYATAKDEDVSFLVVGDPFRPNTMPINYVFTKAKELGVQVEVIQNVSTSCSNLSCGLKGNKFGKPVSIPRWNEHSKPDGFFDAIVVN 270
            +D + + A  EDV+ LVVGDPF   T     +  +AKE G++V+VI N S   +   CGL+   FG+ VSIP W +  KPD FFD IV N
Sbjct:   65 ADVILSDAATEDVALLVVGDPFGATTH--TDLVLRAKEKGIEVQVIHNASILTAVGCCGLQLYSFGETVSIPFWTDTWKPDSFFDKIVSN 152
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10128.223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF08_ECTSI3.520e-2155.56Diphthine methyl ester synthase n=2 Tax=Ectocarpus... [more]
A0A6G0WFG2_9STRA6.690e-1545.98Diphthine methyl ester synthase n=1 Tax=Aphanomyce... [more]
G8Y1B0_PICSO8.930e-1544.09Diphthine methyl ester synthase n=2 Tax=Pichia sor... [more]
A0A024TAC1_9STRA1.490e-1443.68Diphthine methyl ester synthase n=3 Tax=Aphanomyce... [more]
A0A484DUV5_BRELC2.860e-1444.44Diphthine methyl ester synthase n=1 Tax=Bremia lac... [more]
A0A662X8L2_9STRA4.930e-1442.53Diphthine methyl ester synthase (Fragment) n=1 Tax... [more]
A0A485K982_9STRA7.050e-1443.68Aste57867_2532 protein n=1 Tax=Aphanomyces stellat... [more]
H3GB03_PHYRM9.530e-1443.33Diphthine methyl ester synthase n=24 Tax=Phytophth... [more]
A0A662Y364_9STRA9.550e-1442.22Diphthine methyl ester synthase (Fragment) n=1 Tax... [more]
UPI000C20073A1.280e-1345.56diphthine methyl ester synthase n=1 Tax=Onthophagu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10128contigS-firma_F_contig10128:2854..3788 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LF08
Preferred nameDPH5
PFAMsTP_methylase
Max annot lvl2759|Eukaryota
KEGG rclassRC00003,RC03382
KEGG koko:K00586,ko:K07870,ko:K17081
KEGG ReactionR11165
KEGG Pathwayko04137,ko04214,map04137,map04214
GOsGO:0003674,GO:0003824,GO:0004164,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006417,GO:0006448,GO:0006464,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0009056,GO:0009058,GO:0009109,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0010608,GO:0016740,GO:0016741,GO:0017144,GO:0017182,GO:0017183,GO:0018193,GO:0018202,GO:0019222,GO:0019538,GO:0031323,GO:0031326,GO:0032259,GO:0032268,GO:0034248,GO:0036211,GO:0042737,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044273,GO:0044424,GO:0044444,GO:0044464,GO:0046500,GO:0050789,GO:0050794,GO:0050843,GO:0051171,GO:0051186,GO:0051187,GO:0051246,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:1900247,GO:1901564,GO:1901575,GO:2000112,GO:2000765
Evalue5.78e-22
EggNOG OGsCOG1798@1|root,KOG3123@2759|Eukaryota
EC2.1.1.314
Descriptiondiphthine synthase activity
COG categoryJ
BiGG ReactioniMM904.YLR172C,iND750.YLR172C
BRITEko00000,ko00001,ko01000,ko03012,ko03029,ko04031,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size287
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815540.0442853-CDS-S-firma_F_contig10128:2853..30121622815540.0442853-CDS-S-firma_F_contig10128:2853..3012Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10128 2854..3012 -
1696949401.454588-CDS-S-firma_F_contig10128:2853..30121696949401.454588-CDS-S-firma_F_contig10128:2853..3012Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10128 2854..3012 -
1622815540.0556056-CDS-S-firma_F_contig10128:3662..37881622815540.0556056-CDS-S-firma_F_contig10128:3662..3788Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10128 3663..3788 -
1696949401.4669344-CDS-S-firma_F_contig10128:3662..37881696949401.4669344-CDS-S-firma_F_contig10128:3662..3788Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10128 3663..3788 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10128.223.1prot_S-firma_F_contig10128.223.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10128 2854..3788 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10128.223.1

>prot_S-firma_F_contig10128.223.1 ID=prot_S-firma_F_contig10128.223.1|Name=mRNA_S-firma_F_contig10128.223.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=95bp
SDSVYATAKDEDVSFLVVGDPFRPNTMPINYVFTKAKELGVQVEVIQNVS
TSCSNLSCGLKGNKFGKPVSIPRWNEHSKPDGFFDAIVVNGAVSN
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mRNA from alignment at S-firma_F_contig10128:2854..3788-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10128.223.1 ID=mRNA_S-firma_F_contig10128.223.1|Name=mRNA_S-firma_F_contig10128.223.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=935bp|location=Sequence derived from alignment at S-firma_F_contig10128:2854..3788- (Sphaerotrichia firma ET2_F female)
TCGGACAGCGTCTACGCCACCGCGAAGGATGAAGACGTATCTTTCCTGGT
CGTCGGAGATCCGTTCCGACCCAATACTATGCCCATCAATTACGTCTTCA
CAAAGGCTAAAGAACTGGGGGTACAGGTGAGCTTAGTTGGGCGAAATTCG
GCACTGCAGCATCATCAGCTCCAGCCACTCCGCGATTGTGTCTTCGTAGA
TTCGGTCCATCTGGATTACTCTTCGTGTCTACCGTATGGACTTTCGCTGG
CCGGGTTAGGCAGTAAGTGTTCCATCGACGAAAGGGATTCGTGACAGCGG
AGGCTGATGATGGTAGAAGTGTCGCTTTTGTGCTTGCGCGCCTGCCTGGC
TTGGCAACTCTTGCACCACTTGGCGTGGCTTGGCATAGGCGAAGCGCGAT
GGCGGTGTTCGGTCGACGAAAGTGATTCGCGACGTGGAACACGATTTGTC
GAGAAAGGGGGCCTCCCGAGAAACGGCATCTCCGGGGAGTTTGAGTATTC
CATGCGGTGACGTCCATGCGCTCCGGACCAGGATAAACACGCCAGAACAA
ACGTTTGGTGACGTACAGAGCCGCGACGTTTGCCTCACCTTTCCGTCGGG
GTGATTGCGATGTTTCTAACTGCTCTATTTTTGGTGCAACTGGGCCTTAA
ACGATGCAAGCCCTCGTCTTTAACTACGATTTGTACCGTACCCTAACCTA
ATAGTCAAAATCGTGACTTTGGAACCTAACCGCTGTCGTTTTTAATCCCC
ATCGTCCTTGCTTGCCCGTGCGACAGGTGGAGGTGATTCAAAACGTATCG
ACATCGTGTTCGAACTTATCGTGCGGGCTGAAGGGTAACAAATTTGGGAA
GCCCGTGTCGATTCCACGGTGGAACGAGCACTCGAAGCCGGACGGCTTCT
TCGACGCGATAGTGGTCAACGGAGCGGTGAGCAAC
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Coding sequence (CDS) from alignment at S-firma_F_contig10128:2854..3788-

>mRNA_S-firma_F_contig10128.223.1 ID=mRNA_S-firma_F_contig10128.223.1|Name=mRNA_S-firma_F_contig10128.223.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=570bp|location=Sequence derived from alignment at S-firma_F_contig10128:2854..3788- (Sphaerotrichia firma ET2_F female)
TCGGACAGCGTCTACGCCACCGCGAAGGATGAAGACGTATCTTTCCTGGT
CGTCGGAGATCCGTTCCGACCCAATACTATGCCCATCAATTACGTCTTCA
CAAAGGCTAAAGAACTGGGGGTACAGTCGGACAGCGTCTACGCCACCGCG
AAGGATGAAGACGTATCTTTCCTGGTCGTCGGAGATCCGTTCCGACCCAA
TACTATGCCCATCAATTACGTCTTCACAAAGGCTAAAGAACTGGGGGTAC
AGGTGGAGGTGATTCAAAACGTATCGACATCGTGTTCGAACTTATCGTGC
GGGCTGAAGGGTAACAAATTTGGGAAGCCCGTGTCGATTCCACGGTGGAA
CGAGCACTCGAAGCCGGACGGCTTCTTCGACGCGATAGTGGTCAACGGAG
CGGTGAGCAACGTGGAGGTGATTCAAAACGTATCGACATCGTGTTCGAAC
TTATCGTGCGGGCTGAAGGGTAACAAATTTGGGAAGCCCGTGTCGATTCC
ACGGTGGAACGAGCACTCGAAGCCGGACGGCTTCTTCGACGCGATAGTGG
TCAACGGAGCGGTGAGCAAC
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