mRNA_S-firma_F_contig10123.219.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10123.219.1 vs. uniprot
Match: D7FXI8_ECTSI (Protein farnesyltransferase subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXI8_ECTSI) HSP 1 Score: 426 bits (1095), Expect = 1.090e-145 Identity = 201/231 (87.01%), Postives = 217/231 (93.94%), Query Frame = 1
Query: 1 FISLDASRPWMIYWILHSLDLLGHFPEGELVERILQTVLSCQDSEIGGFGGGPQQLPHGAPMYASVLALLLIGTPEAYTGIDRPALYRFFLSLKHASGGFRMHDDGEVDARGTYTVIAVASLLNMLTDELTEGVAEFAVRCQTYEGGFGGEPWNEAHGGYTFCAFASLVILGACDQADLEGLRRWLCARQMRAEGGFQGRTNKLVDGCYSFWQGGAVALLDYVTAGRHSEV 693
FISLDASRPWM+YWILHSLDLL HFP+ E+ +RIL+TVLSCQD+ GGFGGGPQQLPH APMYASVL+LL++GTPEAY GI+R ALYR F+SLKHASGGFRMHDDGEVDARGTYTVIAVASLLNMLT EL+EGVA+FA RCQTYEGGFGGEPWNEAHGGYTFCAFASLVILGA ++ADLEGLR WLCARQMRAEGGFQGRTNKLVDGCYSFWQGGAVA+LDYVTAGR SEV
Sbjct: 99 FISLDASRPWMVYWILHSLDLLDHFPQQEMTQRILRTVLSCQDTINGGFGGGPQQLPHCAPMYASVLSLLILGTPEAYAGIERSALYRLFMSLKHASGGFRMHDDGEVDARGTYTVIAVASLLNMLTPELSEGVADFAARCQTYEGGFGGEPWNEAHGGYTFCAFASLVILGAGERADLEGLRHWLCARQMRAEGGFQGRTNKLVDGCYSFWQGGAVAILDYVTAGRESEV 329
BLAST of mRNA_S-firma_F_contig10123.219.1 vs. uniprot
Match: A0A836CMB6_9STRA (Protein farnesyltransferase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMB6_9STRA) HSP 1 Score: 323 bits (829), Expect = 1.140e-105 Identity = 157/231 (67.97%), Postives = 180/231 (77.92%), Query Frame = 1
Query: 1 FISLDASRPWMIYWILHSLDLLGHFPEGELVERILQTVLSCQDSEIGGFGGGPQQLPHGAPMYASVLALLLIGTPEAYTGIDRPALYRFFLSLKHASGGFRMHDDGEVDARGTYTVIAVASLLNMLTDELTEGVAEFAVRCQTYEGGFGGEPWNEAHGGYTFCAFASLVILGACDQADLEGLRRWLCARQMRAEGGFQGRTNKLVDGCYSFWQGGAVALLDYVTAGRHSEV 693
F++LDASRPW+IYWI HSLDLL + I+ T+ SCQ GGFGGGPQQL H AP YA+VL LLL+GT AY+ +DR ALYRFF S+KH SGGFRMH+DGEVD RGTYTVI++A+LLN+LT EL +GVAE+ + QTYEGGFGGEP NEAHGGY FCAFA+L ILG A L+ L WLC RQMR EGGFQGRTNKLVDGCYSFWQGG +ALL+YV GR EV
Sbjct: 84 FVALDASRPWIIYWITHSLDLLNALRSDDDA-AIIATLASCQQP-TGGFGGGPQQLAHCAPTYAAVLTLLLLGTEAAYSAVDRSALYRFFTSIKHPSGGFRMHEDGEVDVRGTYTVISIAALLNILTPELVQGVAEYVLAAQTYEGGFGGEPGNEAHGGYAFCAFATLGILGRASDARLDSLEWWLCHRQMRLEGGFQGRTNKLVDGCYSFWQGGTLALLEYVRRGRIGEV 312
BLAST of mRNA_S-firma_F_contig10123.219.1 vs. uniprot
Match: F0Y5G6_AURAN (Protein farnesyltransferase subunit beta n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5G6_AURAN) HSP 1 Score: 304 bits (778), Expect = 3.860e-100 Identity = 144/227 (63.44%), Postives = 171/227 (75.33%), Query Frame = 1
Query: 1 FISLDASRPWMIYWILHSLDLLGHFPEGELVERILQTVLSCQDSEIGGFGGGPQQLPHGAPMYASVLALLLIGTPEAYTGIDRPALYRFFLSLKHASGGFRMHDDGEVDARGTYTVIAVASLLNMLTDELTEGVAEFAVRCQTYEGGFGGEPWNEAHGGYTFCAFASLVILGACDQADLEGLRRWLCARQMRAEGGFQGRTNKLVDGCYSFWQGGAVALLDYVTAGR 681
+++LDASRPW+ YWILH +DLL PE E ++ + T+ C+ S GG+GGGPQQL H AP YA+ LA+ ++GT AY +DR LY F LS+K SGGFRMHDDGEVD RGTYT +AVA+L N+LT EL EG A +A+RCQTYEGGFGGEP EAHGGY FCA A+LVIL A D DL+ L RWL RQ R EGGFQGRTNKLVDGCYSFWQGG +AL+ +V G
Sbjct: 30 YVALDASRPWLCYWILHGMDLLDALPE-EKIDDCVATLAKCR-SPTGGYGGGPQQLAHCAPTYAASLAIAVLGTRRAYESVDRKGLYAFLLSMKDPSGGFRMHDDGEVDVRGTYTALAVAALFNVLTPELAEGAAAYALRCQTYEGGFGGEPGVEAHGGYVFCALAALVILNATDAVDLDALERWLARRQTRVEGGFQGRTNKLVDGCYSFWQGGTLALVAHVRRGH 254
BLAST of mRNA_S-firma_F_contig10123.219.1 vs. uniprot
Match: W7TZN2_9STRA (Protein farnesyltransferase subunit beta n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TZN2_9STRA) HSP 1 Score: 296 bits (758), Expect = 2.750e-95 Identity = 145/234 (61.97%), Postives = 170/234 (72.65%), Query Frame = 1
Query: 1 FISLDASRPWMIYWILHSLDLLGHFPE-------GELVERILQTVLSCQDSEIGGFGGGPQQLPHGAPMYASVLALLLIGTPEAYTGIDRPALYRFFLSLKHASGGFRMHDDGEVDARGTYTVIAVASLLNMLTDELTEGVAEFAVRCQTYEGGFGGEPWNEAHGGYTFCAFASLVILGACDQADLEGLRRWLCARQMRAEGGFQGRTNKLVDGCYSFWQGGAVALLDYVTAGR 681
FI LDASRPW+ YWILHSLDLL +L ++ T+ SCQ+S GGFGGGP Q+ H AP YA+VLALL++GT EAY IDRPALY++FL+ KH SGGF MHDDGEVD RGTYTVI++AS+LNMLT +L GV E+ + CQTYEGGFGGE EAHGGY FCAFA+L+IL D DL L+ W+ RQM EGGFQGRTNKLVDGCYSFWQG L++ G
Sbjct: 83 FICLDASRPWLCYWILHSLDLLRGLESRSHSIFRADLARKVTITMNSCQNSG-GGFGGGPYQISHCAPTYAAVLALLILGTEEAYKTIDRPALYKWFLARKHLSGGFCMHDDGEVDVRGTYTVISIASMLNMLTPQLAAGVVEYLLSCQTYEGGFGGETDQEAHGGYVFCAFAALIILSETDGVDLFSLQGWIARRQMSVEGGFQGRTNKLVDGCYSFWQGATAILVEMALHGE 315
BLAST of mRNA_S-firma_F_contig10123.219.1 vs. uniprot
Match: A0A7S3M5V6_9STRA (Protein farnesyltransferase subunit beta n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M5V6_9STRA) HSP 1 Score: 288 bits (737), Expect = 1.800e-92 Identity = 140/223 (62.78%), Postives = 168/223 (75.34%), Query Frame = 1
Query: 1 FISLDASRPWMIYWILHSLDLLGHFPEGELVERILQTVLSCQDSEIGGFGGGPQQLPHGAPMYASVLALLLIGTPEAYTGIDRPALYRFFLSLKHASGGFRMHDDGEVDARGTYTVIAVASLLNMLTDELTEGVAEFAVRCQTYEGGFGGEPWNEAHGGYTFCAFASLVILGACDQADLEGLRRWLCARQMRAEGGFQGRTNKLVDGCYSFWQGGAVALLDYV 669
F+SLDASRPW+ YWI+H+L LL P + R++ T L ++ GGFGGGP Q+ H AP YA+VL L IGTP A IDRPA+Y +FLSLK SGGF +H DGEVD+RGTYTVIAVA +LN+LT ELTEGVA+F VRCQTYEGGFGGEP NEAHGGY +CA A+L+IL + D+E WL RQ++ EGGFQGRTNKLVD CYSFWQG A+A+ + V
Sbjct: 43 FVSLDASRPWICYWIIHALYLLNREPTF-MYPRVINT-LKFMQNKYGGFGGGPSQITHCAPNYAAVLTLCTIGTPAALEVIDRPAMYGYFLSLKSPSGGFMIHTDGEVDSRGTYTVIAVARVLNILTKELTEGVADFVVRCQTYEGGFGGEPNNEAHGGYNYCALATLLILKSAHLCDMEAQENWLLRRQVKLEGGFQGRTNKLVDSCYSFWQGAALAMCEMV 263
BLAST of mRNA_S-firma_F_contig10123.219.1 vs. uniprot
Match: A0A7S4ECU6_9STRA (Protein farnesyltransferase subunit beta n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4ECU6_9STRA) HSP 1 Score: 285 bits (730), Expect = 4.770e-92 Identity = 138/227 (60.79%), Postives = 166/227 (73.13%), Query Frame = 1
Query: 1 FISLDASRPWMIYWILHSLDLLGHFPE-GELVERILQTVLSCQDSEIGGFGGGPQQLPHGAPMYASVLALLLIGTPEAYTGIDRPALYRFFLSLKHASGGFRMHDDGEVDARGTYTVIAVASLLNMLTDELTEGVAEFAVRCQTYEGGFGGEPWNEAHGGYTFCAFASLVILGACDQADLEGLRRWLCARQMRAEGGFQGRTNKLVDGCYSFWQGGAVALLDYVTAG 678
F++LDASRPW++YWI+H+LDLL + E+ +R + T+ +C+ G FGGGP+QL H AP YA+ LAL IG+ EA+ IDRPALY+F LS+K AS GFRMHDDGEVD RGTYT IAVA+L N+LT +L EGVAE+A CQTYEGGFGGEP EAHGGY FCA A+L IL AC DL+ L W+ RQ EGG+QGR NKLVD CYSFWQGG L + G
Sbjct: 76 FVALDASRPWLVYWIIHALDLLEALDDDAEIKQRCISTLRACRAE--GAFGGGPRQLAHLAPTYAATLALCCIGSNEAFETIDRPALYQFLLSMKDASNGFRMHDDGEVDVRGTYTAIAVAALTNVLTPQLVEGVAEYAASCQTYEGGFGGEPGVEAHGGYGFCAIATLCILDACHLVDLDALDAWVARRQTSIEGGYQGRANKLVDACYSFWQGGTAQLSAHARRG 300
BLAST of mRNA_S-firma_F_contig10123.219.1 vs. uniprot
Match: A0A3M6VTJ6_9STRA (Protein farnesyltransferase subunit beta n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VTJ6_9STRA) HSP 1 Score: 283 bits (723), Expect = 3.470e-91 Identity = 143/233 (61.37%), Postives = 169/233 (72.53%), Query Frame = 1
Query: 1 FISLDASRPWMIYWILHSLDLLGHFPEGELVERILQTVLSCQDSEI-GGFGGGPQQLPHGAPMYASVLALLLIGTPEAYTGIDRPALYRFFLSLKHA-SGGFRMHDDGEVDARGTYTVIAVASLLNMLTDELTEGVAEFAVRCQTYEGGFGGEPWNEAHGGYTFCAFASLVILGACDQA-DLEGLRRWLCARQMRAEGGFQGRTNKLVDGCYSFWQGGAVALLDYVTAGRHSE 690
F++LDASRPW+IYWILH+LDLL PE E R++ T+ +++ GGFGGGP+QL H A YAS L L L+GTPEA+ +DRP LYRFFL+ KHA SG F HD GE D R TY VI++ASL +LTDEL +GV E+ + CQTYEGGFGGEP NEAHGGY FC+ A+L IL A DQ DL GL WL RQM EGG+QGRTNKLVDGCYSFWQG ALL V R+ +
Sbjct: 78 FVALDASRPWIIYWILHALDLLDALPEEETA-RVIDTLKPFWNNDHEGGFGGGPKQLGHTATNYASCLTLALLGTPEAWEAVDRPGLYRFFLARKHATSGAFTAHDGGEADVRVTYCVISIASLYGILTDELKDGVVEYVLSCQTYEGGFGGEPGNEAHGGYAFCSVATLYILEAIDQIRDLPGLLHWLANRQMPFEGGYQGRTNKLVDGCYSFWQGAVPALLAQVVRQRYGD 309
BLAST of mRNA_S-firma_F_contig10123.219.1 vs. uniprot
Match: D0NST4_PHYIT (Protein farnesyltransferase subunit beta n=20 Tax=Phytophthora TaxID=4783 RepID=D0NST4_PHYIT) HSP 1 Score: 282 bits (721), Expect = 9.110e-91 Identity = 142/233 (60.94%), Postives = 169/233 (72.53%), Query Frame = 1
Query: 1 FISLDASRPWMIYWILHSLDLLGHFPEGELVERILQTVLSCQDSEI-GGFGGGPQQLPHGAPMYASVLALLLIGTPEAYTGIDRPALYRFFLSLKHAS-GGFRMHDDGEVDARGTYTVIAVASLLNMLTDELTEGVAEFAVRCQTYEGGFGGEPWNEAHGGYTFCAFASLVILGACDQA-DLEGLRRWLCARQMRAEGGFQGRTNKLVDGCYSFWQGGAVALLDYVTAGRHSE 690
F+SLDASRPW+IYW+LH+LDLLG PE E +R++ T+ C + ++ GGFGGG +QL H A YAS L L L+GTPEA +DR LYRFF+S KHA+ G F HD GEVD R TY VI++ASL +LTDEL GV ++ + CQTYEGGFGGEP NEAHGGY FC+ A+L IL A DQ DL GL WL RQM EGG+QGRTNKLVDGCYSFWQG ALL V R+ +
Sbjct: 87 FVSLDASRPWIIYWVLHALDLLGALPEEE-TDRVIGTLKHCWNDDLDGGFGGGQKQLGHTATTYASCLTLALLGTPEALDTVDRHKLYRFFMSRKHAATGAFTAHDGGEVDVRVTYCVISIASLYGILTDELKTGVVDYILSCQTYEGGFGGEPGNEAHGGYAFCSVAALYILDAVDQIRDLPGLLHWLANRQMPFEGGYQGRTNKLVDGCYSFWQGAVPALLAEVVRERYGD 318
BLAST of mRNA_S-firma_F_contig10123.219.1 vs. uniprot
Match: A0A3R7H5E8_9STRA (Protein farnesyltransferase subunit beta n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7H5E8_9STRA) HSP 1 Score: 279 bits (714), Expect = 1.070e-89 Identity = 142/233 (60.94%), Postives = 167/233 (71.67%), Query Frame = 1
Query: 1 FISLDASRPWMIYWILHSLDLLGHFPEGELVERILQTVLSC-QDSEIGGFGGGPQQLPHGAPMYASVLALLLIGTPEAYTGIDRPALYRFFLSLKHAS-GGFRMHDDGEVDARGTYTVIAVASLLNMLTDELTEGVAEFAVRCQTYEGGFGGEPWNEAHGGYTFCAFASLVILGACDQA-DLEGLRRWLCARQMRAEGGFQGRTNKLVDGCYSFWQGGAVALLDYVTAGRHSE 690
F++LDASRPW++YWILH+L+LL P+ E R + T+ +C D GGFGGGP+QL H A YAS L L L+GTPEA +DR ALYRFFLS KHA+ G F HD GEVD R TY V+++ASL +LTDEL GV ++ + CQTYEGGFGGEP NEAHGGY FCA A+L IL A DQ DL GL WL RQM EGG+QGRTNKLVDGCYSFWQG ALL V R+ +
Sbjct: 88 FVALDASRPWIVYWILHALELLDALPK-EQTARAIATLKTCWNDDHDGGFGGGPKQLGHTATNYASCLTLALLGTPEALETVDRQALYRFFLSRKHAATGAFTAHDGGEVDVRVTYCVVSIASLYGILTDELKAGVVDYVLSCQTYEGGFGGEPGNEAHGGYAFCAVATLYILEAVDQIQDLPGLLHWLANRQMPFEGGYQGRTNKLVDGCYSFWQGALPALLADVVRERYGD 319
BLAST of mRNA_S-firma_F_contig10123.219.1 vs. uniprot
Match: A0A7S2S187_9STRA (Protein farnesyltransferase subunit beta n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S187_9STRA) HSP 1 Score: 280 bits (716), Expect = 3.450e-89 Identity = 151/255 (59.22%), Postives = 174/255 (68.24%), Query Frame = 1
Query: 1 FISLDASRPWMIYWILHSLDLLG--------HFPEGE---LVERILQTVLSCQDSEIGGFGGGPQQLPHGAPMYASVLALLLIGTP------------------EAYTGIDRPALYRFFLSLKH-ASGGFRMHDDGEVDARGTYTVIAVASLLNMLTDELTEGVAEFAVRCQTYEGGFGGEPWNEAHGGYTFCAFASLVILGACDQADLEGLRRWLCARQMRAEGGFQGRTNKLVDGCYSFWQGGAVALLDYVTA 675
++ LDASRPW+ YWI H+LDLL H P+ L RI+Q++ CQ+S GGFGGG QQL H AP YA+ LALL IG A+ IDR A+Y +FLSLK ASGGFRMHDDGEVD RGTYTVIA++SLLN+LT ELT+GVAEFA+ CQTYEGGFGGEP EAHGGY FCA A+L +LG +ADL L RWL RQ EGGFQGR NKLVDGCYSFWQGG ALL ++ A
Sbjct: 80 YVCLDASRPWLCYWITHALDLLDALHPARPLHHPQSTARGLRLRIVQSLSFCQNS-TGGFGGGNQQLSHCAPNYAACLALLAIGAAGQTSPGETLSDEDLAVREAAWGAIDRVAMYSWFLSLKDPASGGFRMHDDGEVDVRGTYTVIAISSLLNILTPELTKGVAEFALACQTYEGGFGGEPGVEAHGGYVFCALAALALLGRAKEADLLSLERWLADRQTHHEGGFQGRANKLVDGCYSFWQGGTGALLAFLNA 333 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10123.219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10123.219.1 >prot_S-firma_F_contig10123.219.1 ID=prot_S-firma_F_contig10123.219.1|Name=mRNA_S-firma_F_contig10123.219.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=221bp MIYWILHSLDLLGHFPEGELVERILQTVLSCQDSEIGGFGGGPQQLPHGAback to top mRNA from alignment at S-firma_F_contig10123:1133..5168- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10123.219.1 ID=mRNA_S-firma_F_contig10123.219.1|Name=mRNA_S-firma_F_contig10123.219.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=4036bp|location=Sequence derived from alignment at S-firma_F_contig10123:1133..5168- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10123:1133..5168- >mRNA_S-firma_F_contig10123.219.1 ID=mRNA_S-firma_F_contig10123.219.1|Name=mRNA_S-firma_F_contig10123.219.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1326bp|location=Sequence derived from alignment at S-firma_F_contig10123:1133..5168- (Sphaerotrichia firma ET2_F female)back to top |