mRNA_S-firma_F_contig10123.219.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10123.219.1
Unique NamemRNA_S-firma_F_contig10123.219.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10123.219.1 vs. uniprot
Match: D7FXI8_ECTSI (Protein farnesyltransferase subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXI8_ECTSI)

HSP 1 Score: 426 bits (1095), Expect = 1.090e-145
Identity = 201/231 (87.01%), Postives = 217/231 (93.94%), Query Frame = 1
Query:    1 FISLDASRPWMIYWILHSLDLLGHFPEGELVERILQTVLSCQDSEIGGFGGGPQQLPHGAPMYASVLALLLIGTPEAYTGIDRPALYRFFLSLKHASGGFRMHDDGEVDARGTYTVIAVASLLNMLTDELTEGVAEFAVRCQTYEGGFGGEPWNEAHGGYTFCAFASLVILGACDQADLEGLRRWLCARQMRAEGGFQGRTNKLVDGCYSFWQGGAVALLDYVTAGRHSEV 693
            FISLDASRPWM+YWILHSLDLL HFP+ E+ +RIL+TVLSCQD+  GGFGGGPQQLPH APMYASVL+LL++GTPEAY GI+R ALYR F+SLKHASGGFRMHDDGEVDARGTYTVIAVASLLNMLT EL+EGVA+FA RCQTYEGGFGGEPWNEAHGGYTFCAFASLVILGA ++ADLEGLR WLCARQMRAEGGFQGRTNKLVDGCYSFWQGGAVA+LDYVTAGR SEV
Sbjct:   99 FISLDASRPWMVYWILHSLDLLDHFPQQEMTQRILRTVLSCQDTINGGFGGGPQQLPHCAPMYASVLSLLILGTPEAYAGIERSALYRLFMSLKHASGGFRMHDDGEVDARGTYTVIAVASLLNMLTPELSEGVADFAARCQTYEGGFGGEPWNEAHGGYTFCAFASLVILGAGERADLEGLRHWLCARQMRAEGGFQGRTNKLVDGCYSFWQGGAVAILDYVTAGRESEV 329          
BLAST of mRNA_S-firma_F_contig10123.219.1 vs. uniprot
Match: A0A836CMB6_9STRA (Protein farnesyltransferase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMB6_9STRA)

HSP 1 Score: 323 bits (829), Expect = 1.140e-105
Identity = 157/231 (67.97%), Postives = 180/231 (77.92%), Query Frame = 1
Query:    1 FISLDASRPWMIYWILHSLDLLGHFPEGELVERILQTVLSCQDSEIGGFGGGPQQLPHGAPMYASVLALLLIGTPEAYTGIDRPALYRFFLSLKHASGGFRMHDDGEVDARGTYTVIAVASLLNMLTDELTEGVAEFAVRCQTYEGGFGGEPWNEAHGGYTFCAFASLVILGACDQADLEGLRRWLCARQMRAEGGFQGRTNKLVDGCYSFWQGGAVALLDYVTAGRHSEV 693
            F++LDASRPW+IYWI HSLDLL      +    I+ T+ SCQ    GGFGGGPQQL H AP YA+VL LLL+GT  AY+ +DR ALYRFF S+KH SGGFRMH+DGEVD RGTYTVI++A+LLN+LT EL +GVAE+ +  QTYEGGFGGEP NEAHGGY FCAFA+L ILG    A L+ L  WLC RQMR EGGFQGRTNKLVDGCYSFWQGG +ALL+YV  GR  EV
Sbjct:   84 FVALDASRPWIIYWITHSLDLLNALRSDDDA-AIIATLASCQQP-TGGFGGGPQQLAHCAPTYAAVLTLLLLGTEAAYSAVDRSALYRFFTSIKHPSGGFRMHEDGEVDVRGTYTVISIAALLNILTPELVQGVAEYVLAAQTYEGGFGGEPGNEAHGGYAFCAFATLGILGRASDARLDSLEWWLCHRQMRLEGGFQGRTNKLVDGCYSFWQGGTLALLEYVRRGRIGEV 312          
BLAST of mRNA_S-firma_F_contig10123.219.1 vs. uniprot
Match: F0Y5G6_AURAN (Protein farnesyltransferase subunit beta n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5G6_AURAN)

HSP 1 Score: 304 bits (778), Expect = 3.860e-100
Identity = 144/227 (63.44%), Postives = 171/227 (75.33%), Query Frame = 1
Query:    1 FISLDASRPWMIYWILHSLDLLGHFPEGELVERILQTVLSCQDSEIGGFGGGPQQLPHGAPMYASVLALLLIGTPEAYTGIDRPALYRFFLSLKHASGGFRMHDDGEVDARGTYTVIAVASLLNMLTDELTEGVAEFAVRCQTYEGGFGGEPWNEAHGGYTFCAFASLVILGACDQADLEGLRRWLCARQMRAEGGFQGRTNKLVDGCYSFWQGGAVALLDYVTAGR 681
            +++LDASRPW+ YWILH +DLL   PE E ++  + T+  C+ S  GG+GGGPQQL H AP YA+ LA+ ++GT  AY  +DR  LY F LS+K  SGGFRMHDDGEVD RGTYT +AVA+L N+LT EL EG A +A+RCQTYEGGFGGEP  EAHGGY FCA A+LVIL A D  DL+ L RWL  RQ R EGGFQGRTNKLVDGCYSFWQGG +AL+ +V  G 
Sbjct:   30 YVALDASRPWLCYWILHGMDLLDALPE-EKIDDCVATLAKCR-SPTGGYGGGPQQLAHCAPTYAASLAIAVLGTRRAYESVDRKGLYAFLLSMKDPSGGFRMHDDGEVDVRGTYTALAVAALFNVLTPELAEGAAAYALRCQTYEGGFGGEPGVEAHGGYVFCALAALVILNATDAVDLDALERWLARRQTRVEGGFQGRTNKLVDGCYSFWQGGTLALVAHVRRGH 254          
BLAST of mRNA_S-firma_F_contig10123.219.1 vs. uniprot
Match: W7TZN2_9STRA (Protein farnesyltransferase subunit beta n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TZN2_9STRA)

HSP 1 Score: 296 bits (758), Expect = 2.750e-95
Identity = 145/234 (61.97%), Postives = 170/234 (72.65%), Query Frame = 1
Query:    1 FISLDASRPWMIYWILHSLDLLGHFPE-------GELVERILQTVLSCQDSEIGGFGGGPQQLPHGAPMYASVLALLLIGTPEAYTGIDRPALYRFFLSLKHASGGFRMHDDGEVDARGTYTVIAVASLLNMLTDELTEGVAEFAVRCQTYEGGFGGEPWNEAHGGYTFCAFASLVILGACDQADLEGLRRWLCARQMRAEGGFQGRTNKLVDGCYSFWQGGAVALLDYVTAGR 681
            FI LDASRPW+ YWILHSLDLL             +L  ++  T+ SCQ+S  GGFGGGP Q+ H AP YA+VLALL++GT EAY  IDRPALY++FL+ KH SGGF MHDDGEVD RGTYTVI++AS+LNMLT +L  GV E+ + CQTYEGGFGGE   EAHGGY FCAFA+L+IL   D  DL  L+ W+  RQM  EGGFQGRTNKLVDGCYSFWQG    L++    G 
Sbjct:   83 FICLDASRPWLCYWILHSLDLLRGLESRSHSIFRADLARKVTITMNSCQNSG-GGFGGGPYQISHCAPTYAAVLALLILGTEEAYKTIDRPALYKWFLARKHLSGGFCMHDDGEVDVRGTYTVISIASMLNMLTPQLAAGVVEYLLSCQTYEGGFGGETDQEAHGGYVFCAFAALIILSETDGVDLFSLQGWIARRQMSVEGGFQGRTNKLVDGCYSFWQGATAILVEMALHGE 315          
BLAST of mRNA_S-firma_F_contig10123.219.1 vs. uniprot
Match: A0A7S3M5V6_9STRA (Protein farnesyltransferase subunit beta n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M5V6_9STRA)

HSP 1 Score: 288 bits (737), Expect = 1.800e-92
Identity = 140/223 (62.78%), Postives = 168/223 (75.34%), Query Frame = 1
Query:    1 FISLDASRPWMIYWILHSLDLLGHFPEGELVERILQTVLSCQDSEIGGFGGGPQQLPHGAPMYASVLALLLIGTPEAYTGIDRPALYRFFLSLKHASGGFRMHDDGEVDARGTYTVIAVASLLNMLTDELTEGVAEFAVRCQTYEGGFGGEPWNEAHGGYTFCAFASLVILGACDQADLEGLRRWLCARQMRAEGGFQGRTNKLVDGCYSFWQGGAVALLDYV 669
            F+SLDASRPW+ YWI+H+L LL   P   +  R++ T L    ++ GGFGGGP Q+ H AP YA+VL L  IGTP A   IDRPA+Y +FLSLK  SGGF +H DGEVD+RGTYTVIAVA +LN+LT ELTEGVA+F VRCQTYEGGFGGEP NEAHGGY +CA A+L+IL +    D+E    WL  RQ++ EGGFQGRTNKLVD CYSFWQG A+A+ + V
Sbjct:   43 FVSLDASRPWICYWIIHALYLLNREPTF-MYPRVINT-LKFMQNKYGGFGGGPSQITHCAPNYAAVLTLCTIGTPAALEVIDRPAMYGYFLSLKSPSGGFMIHTDGEVDSRGTYTVIAVARVLNILTKELTEGVADFVVRCQTYEGGFGGEPNNEAHGGYNYCALATLLILKSAHLCDMEAQENWLLRRQVKLEGGFQGRTNKLVDSCYSFWQGAALAMCEMV 263          
BLAST of mRNA_S-firma_F_contig10123.219.1 vs. uniprot
Match: A0A7S4ECU6_9STRA (Protein farnesyltransferase subunit beta n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4ECU6_9STRA)

HSP 1 Score: 285 bits (730), Expect = 4.770e-92
Identity = 138/227 (60.79%), Postives = 166/227 (73.13%), Query Frame = 1
Query:    1 FISLDASRPWMIYWILHSLDLLGHFPE-GELVERILQTVLSCQDSEIGGFGGGPQQLPHGAPMYASVLALLLIGTPEAYTGIDRPALYRFFLSLKHASGGFRMHDDGEVDARGTYTVIAVASLLNMLTDELTEGVAEFAVRCQTYEGGFGGEPWNEAHGGYTFCAFASLVILGACDQADLEGLRRWLCARQMRAEGGFQGRTNKLVDGCYSFWQGGAVALLDYVTAG 678
            F++LDASRPW++YWI+H+LDLL    +  E+ +R + T+ +C+    G FGGGP+QL H AP YA+ LAL  IG+ EA+  IDRPALY+F LS+K AS GFRMHDDGEVD RGTYT IAVA+L N+LT +L EGVAE+A  CQTYEGGFGGEP  EAHGGY FCA A+L IL AC   DL+ L  W+  RQ   EGG+QGR NKLVD CYSFWQGG   L  +   G
Sbjct:   76 FVALDASRPWLVYWIIHALDLLEALDDDAEIKQRCISTLRACRAE--GAFGGGPRQLAHLAPTYAATLALCCIGSNEAFETIDRPALYQFLLSMKDASNGFRMHDDGEVDVRGTYTAIAVAALTNVLTPQLVEGVAEYAASCQTYEGGFGGEPGVEAHGGYGFCAIATLCILDACHLVDLDALDAWVARRQTSIEGGYQGRANKLVDACYSFWQGGTAQLSAHARRG 300          
BLAST of mRNA_S-firma_F_contig10123.219.1 vs. uniprot
Match: A0A3M6VTJ6_9STRA (Protein farnesyltransferase subunit beta n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VTJ6_9STRA)

HSP 1 Score: 283 bits (723), Expect = 3.470e-91
Identity = 143/233 (61.37%), Postives = 169/233 (72.53%), Query Frame = 1
Query:    1 FISLDASRPWMIYWILHSLDLLGHFPEGELVERILQTVLSCQDSEI-GGFGGGPQQLPHGAPMYASVLALLLIGTPEAYTGIDRPALYRFFLSLKHA-SGGFRMHDDGEVDARGTYTVIAVASLLNMLTDELTEGVAEFAVRCQTYEGGFGGEPWNEAHGGYTFCAFASLVILGACDQA-DLEGLRRWLCARQMRAEGGFQGRTNKLVDGCYSFWQGGAVALLDYVTAGRHSE 690
            F++LDASRPW+IYWILH+LDLL   PE E   R++ T+    +++  GGFGGGP+QL H A  YAS L L L+GTPEA+  +DRP LYRFFL+ KHA SG F  HD GE D R TY VI++ASL  +LTDEL +GV E+ + CQTYEGGFGGEP NEAHGGY FC+ A+L IL A DQ  DL GL  WL  RQM  EGG+QGRTNKLVDGCYSFWQG   ALL  V   R+ +
Sbjct:   78 FVALDASRPWIIYWILHALDLLDALPEEETA-RVIDTLKPFWNNDHEGGFGGGPKQLGHTATNYASCLTLALLGTPEAWEAVDRPGLYRFFLARKHATSGAFTAHDGGEADVRVTYCVISIASLYGILTDELKDGVVEYVLSCQTYEGGFGGEPGNEAHGGYAFCSVATLYILEAIDQIRDLPGLLHWLANRQMPFEGGYQGRTNKLVDGCYSFWQGAVPALLAQVVRQRYGD 309          
BLAST of mRNA_S-firma_F_contig10123.219.1 vs. uniprot
Match: D0NST4_PHYIT (Protein farnesyltransferase subunit beta n=20 Tax=Phytophthora TaxID=4783 RepID=D0NST4_PHYIT)

HSP 1 Score: 282 bits (721), Expect = 9.110e-91
Identity = 142/233 (60.94%), Postives = 169/233 (72.53%), Query Frame = 1
Query:    1 FISLDASRPWMIYWILHSLDLLGHFPEGELVERILQTVLSCQDSEI-GGFGGGPQQLPHGAPMYASVLALLLIGTPEAYTGIDRPALYRFFLSLKHAS-GGFRMHDDGEVDARGTYTVIAVASLLNMLTDELTEGVAEFAVRCQTYEGGFGGEPWNEAHGGYTFCAFASLVILGACDQA-DLEGLRRWLCARQMRAEGGFQGRTNKLVDGCYSFWQGGAVALLDYVTAGRHSE 690
            F+SLDASRPW+IYW+LH+LDLLG  PE E  +R++ T+  C + ++ GGFGGG +QL H A  YAS L L L+GTPEA   +DR  LYRFF+S KHA+ G F  HD GEVD R TY VI++ASL  +LTDEL  GV ++ + CQTYEGGFGGEP NEAHGGY FC+ A+L IL A DQ  DL GL  WL  RQM  EGG+QGRTNKLVDGCYSFWQG   ALL  V   R+ +
Sbjct:   87 FVSLDASRPWIIYWVLHALDLLGALPEEE-TDRVIGTLKHCWNDDLDGGFGGGQKQLGHTATTYASCLTLALLGTPEALDTVDRHKLYRFFMSRKHAATGAFTAHDGGEVDVRVTYCVISIASLYGILTDELKTGVVDYILSCQTYEGGFGGEPGNEAHGGYAFCSVAALYILDAVDQIRDLPGLLHWLANRQMPFEGGYQGRTNKLVDGCYSFWQGAVPALLAEVVRERYGD 318          
BLAST of mRNA_S-firma_F_contig10123.219.1 vs. uniprot
Match: A0A3R7H5E8_9STRA (Protein farnesyltransferase subunit beta n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7H5E8_9STRA)

HSP 1 Score: 279 bits (714), Expect = 1.070e-89
Identity = 142/233 (60.94%), Postives = 167/233 (71.67%), Query Frame = 1
Query:    1 FISLDASRPWMIYWILHSLDLLGHFPEGELVERILQTVLSC-QDSEIGGFGGGPQQLPHGAPMYASVLALLLIGTPEAYTGIDRPALYRFFLSLKHAS-GGFRMHDDGEVDARGTYTVIAVASLLNMLTDELTEGVAEFAVRCQTYEGGFGGEPWNEAHGGYTFCAFASLVILGACDQA-DLEGLRRWLCARQMRAEGGFQGRTNKLVDGCYSFWQGGAVALLDYVTAGRHSE 690
            F++LDASRPW++YWILH+L+LL   P+ E   R + T+ +C  D   GGFGGGP+QL H A  YAS L L L+GTPEA   +DR ALYRFFLS KHA+ G F  HD GEVD R TY V+++ASL  +LTDEL  GV ++ + CQTYEGGFGGEP NEAHGGY FCA A+L IL A DQ  DL GL  WL  RQM  EGG+QGRTNKLVDGCYSFWQG   ALL  V   R+ +
Sbjct:   88 FVALDASRPWIVYWILHALELLDALPK-EQTARAIATLKTCWNDDHDGGFGGGPKQLGHTATNYASCLTLALLGTPEALETVDRQALYRFFLSRKHAATGAFTAHDGGEVDVRVTYCVVSIASLYGILTDELKAGVVDYVLSCQTYEGGFGGEPGNEAHGGYAFCAVATLYILEAVDQIQDLPGLLHWLANRQMPFEGGYQGRTNKLVDGCYSFWQGALPALLADVVRERYGD 319          
BLAST of mRNA_S-firma_F_contig10123.219.1 vs. uniprot
Match: A0A7S2S187_9STRA (Protein farnesyltransferase subunit beta n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S187_9STRA)

HSP 1 Score: 280 bits (716), Expect = 3.450e-89
Identity = 151/255 (59.22%), Postives = 174/255 (68.24%), Query Frame = 1
Query:    1 FISLDASRPWMIYWILHSLDLLG--------HFPEGE---LVERILQTVLSCQDSEIGGFGGGPQQLPHGAPMYASVLALLLIGTP------------------EAYTGIDRPALYRFFLSLKH-ASGGFRMHDDGEVDARGTYTVIAVASLLNMLTDELTEGVAEFAVRCQTYEGGFGGEPWNEAHGGYTFCAFASLVILGACDQADLEGLRRWLCARQMRAEGGFQGRTNKLVDGCYSFWQGGAVALLDYVTA 675
            ++ LDASRPW+ YWI H+LDLL         H P+     L  RI+Q++  CQ+S  GGFGGG QQL H AP YA+ LALL IG                     A+  IDR A+Y +FLSLK  ASGGFRMHDDGEVD RGTYTVIA++SLLN+LT ELT+GVAEFA+ CQTYEGGFGGEP  EAHGGY FCA A+L +LG   +ADL  L RWL  RQ   EGGFQGR NKLVDGCYSFWQGG  ALL ++ A
Sbjct:   80 YVCLDASRPWLCYWITHALDLLDALHPARPLHHPQSTARGLRLRIVQSLSFCQNS-TGGFGGGNQQLSHCAPNYAACLALLAIGAAGQTSPGETLSDEDLAVREAAWGAIDRVAMYSWFLSLKDPASGGFRMHDDGEVDVRGTYTVIAISSLLNILTPELTKGVAEFALACQTYEGGFGGEPGVEAHGGYVFCALAALALLGRAKEADLLSLERWLADRQTHHEGGFQGRANKLVDGCYSFWQGGTGALLAFLNA 333          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10123.219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXI8_ECTSI1.090e-14587.01Protein farnesyltransferase subunit beta n=1 Tax=E... [more]
A0A836CMB6_9STRA1.140e-10567.97Protein farnesyltransferase subunit beta n=1 Tax=T... [more]
F0Y5G6_AURAN3.860e-10063.44Protein farnesyltransferase subunit beta n=1 Tax=A... [more]
W7TZN2_9STRA2.750e-9561.97Protein farnesyltransferase subunit beta n=2 Tax=N... [more]
A0A7S3M5V6_9STRA1.800e-9262.78Protein farnesyltransferase subunit beta n=2 Tax=S... [more]
A0A7S4ECU6_9STRA4.770e-9260.79Protein farnesyltransferase subunit beta n=1 Tax=P... [more]
A0A3M6VTJ6_9STRA3.470e-9161.37Protein farnesyltransferase subunit beta n=1 Tax=P... [more]
D0NST4_PHYIT9.110e-9160.94Protein farnesyltransferase subunit beta n=20 Tax=... [more]
A0A3R7H5E8_9STRA1.070e-8960.94Protein farnesyltransferase subunit beta n=3 Tax=P... [more]
A0A7S2S187_9STRA3.450e-8959.22Protein farnesyltransferase subunit beta n=1 Tax=R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10123contigS-firma_F_contig10123:1133..5168 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7FXI8
Preferred nameFNTB
PFAMsPrenyltrans
Max annot lvl2759|Eukaryota
KEGG rclassRC00069,RC03004
KEGG koko:K05954
KEGG ReactionR09844
KEGG Pathwayko00900,ko01130,map00900,map01130
GOsGO:0001101,GO:0003674,GO:0003824,GO:0004311,GO:0004659,GO:0004660,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005875,GO:0005965,GO:0006464,GO:0006807,GO:0006950,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0008284,GO:0008285,GO:0008318,GO:0009414,GO:0009415,GO:0009611,GO:0009628,GO:0009719,GO:0009725,GO:0009737,GO:0009787,GO:0009788,GO:0009889,GO:0009891,GO:0009893,GO:0009934,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010035,GO:0010118,GO:0010556,GO:0010557,GO:0010604,GO:0010646,GO:0010648,GO:0014070,GO:0015630,GO:0016740,GO:0016765,GO:0018342,GO:0018343,GO:0019222,GO:0019538,GO:0022603,GO:0023051,GO:0023057,GO:0032991,GO:0033036,GO:0033993,GO:0034097,GO:0034613,GO:0036211,GO:0042060,GO:0042127,GO:0042221,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045787,GO:0046872,GO:0046914,GO:0048145,GO:0048146,GO:0048509,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051179,GO:0051641,GO:0051726,GO:0051769,GO:0051770,GO:0060255,GO:0065007,GO:0070727,GO:0071704,GO:0072657,GO:0072659,GO:0097305,GO:0097354,GO:0140096,GO:1901419,GO:1901420,GO:1901564,GO:1901700,GO:1902494,GO:1905957,GO:1905958,GO:1990069,GO:1990234,GO:1990778
Evalue1.45e-137
EggNOG OGsCOG5029@1|root,KOG0365@2759|Eukaryota
EC2.5.1.58
Descriptionprotein farnesylation
COG categoryO
BRITEko00000,ko00001,ko01000,ko01006
Hectar predicted targeting categoryother localisation
Exons6
Model size693
Cds size663
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815539.6994424-CDS-S-firma_F_contig10123:1132..12381622815539.6994424-CDS-S-firma_F_contig10123:1132..1238Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10123 1133..1238 -
1696949400.889823-CDS-S-firma_F_contig10123:1132..12381696949400.889823-CDS-S-firma_F_contig10123:1132..1238Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10123 1133..1238 -
1622815539.7110498-CDS-S-firma_F_contig10123:1805..19271622815539.7110498-CDS-S-firma_F_contig10123:1805..1927Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10123 1806..1927 -
1696949400.9056857-CDS-S-firma_F_contig10123:1805..19271696949400.9056857-CDS-S-firma_F_contig10123:1805..1927Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10123 1806..1927 -
1622815539.721639-CDS-S-firma_F_contig10123:2529..25801622815539.721639-CDS-S-firma_F_contig10123:2529..2580Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10123 2530..2580 -
1696949400.9208908-CDS-S-firma_F_contig10123:2529..25801696949400.9208908-CDS-S-firma_F_contig10123:2529..2580Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10123 2530..2580 -
1622815539.7344208-CDS-S-firma_F_contig10123:3362..35281622815539.7344208-CDS-S-firma_F_contig10123:3362..3528Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10123 3363..3528 -
1696949400.9366763-CDS-S-firma_F_contig10123:3362..35281696949400.9366763-CDS-S-firma_F_contig10123:3362..3528Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10123 3363..3528 -
1622815539.7484741-CDS-S-firma_F_contig10123:4074..41961622815539.7484741-CDS-S-firma_F_contig10123:4074..4196Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10123 4075..4196 -
1696949400.9474099-CDS-S-firma_F_contig10123:4074..41961696949400.9474099-CDS-S-firma_F_contig10123:4074..4196Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10123 4075..4196 -
1622815539.7610905-CDS-S-firma_F_contig10123:5042..51381622815539.7610905-CDS-S-firma_F_contig10123:5042..5138Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10123 5043..5138 -
1696949400.9567366-CDS-S-firma_F_contig10123:5042..51381696949400.9567366-CDS-S-firma_F_contig10123:5042..5138Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10123 5043..5138 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815539.7715735-UTR-S-firma_F_contig10123:5138..51681622815539.7715735-UTR-S-firma_F_contig10123:5138..5168Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10123 5139..5168 -
1696949400.9653099-UTR-S-firma_F_contig10123:5138..51681696949400.9653099-UTR-S-firma_F_contig10123:5138..5168Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10123 5139..5168 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10123.219.1prot_S-firma_F_contig10123.219.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10123 1133..5138 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10123.219.1

>prot_S-firma_F_contig10123.219.1 ID=prot_S-firma_F_contig10123.219.1|Name=mRNA_S-firma_F_contig10123.219.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=221bp
MIYWILHSLDLLGHFPEGELVERILQTVLSCQDSEIGGFGGGPQQLPHGA
PMYASVLALLLIGTPEAYTGIDRPALYRFFLSLKHASGGFRMHDDGEVDA
RGTYTVIAVASLLNMLTDELTEGVAEFAVRCQTYEGGFGGEPWNEAHGGY
TFCAFASLVILGACDQADLEGLRRWLCARQMRAEGGFQGRTNKLVDGCYS
FWQGGAVALLDYVTAGRHSEV
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mRNA from alignment at S-firma_F_contig10123:1133..5168-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10123.219.1 ID=mRNA_S-firma_F_contig10123.219.1|Name=mRNA_S-firma_F_contig10123.219.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=4036bp|location=Sequence derived from alignment at S-firma_F_contig10123:1133..5168- (Sphaerotrichia firma ET2_F female)
TTCATTTCCTTAGACGCTAGCCGGCCGTGGATGATCTACTGGATCCTGCA CTCCCTTGACCTCCTCGGCCACTTCCCTGAGGGGGAGCTGGTGGAGAGAA TTCTTCAGACCGTACTGTCCTGCCAGGTTTGTGCATGTAACGGCAATGTA AACGGTGAACATCAAGTACTCCGTATGTTGTTGTTGTTGTTGTTGTTGTT GTTGTTGTTGTTGTTGTGGTTGTTGTTGTTGTGGTTGGTGGTGGTGGTGG TGGTGGTGGTGGTGGTGGTTGTGGTTGTTGTTGTTGTTGTTGTTGTTGTT GTTGTTGTTGTTGTTGTTGTTGTCTTCACATTAGAAACCATCCCGGTCTC TGTATCCAGTACCTCCCTCTGTCTCAACCTCTCCGTACTACTGTAATCCA GCACTTGACGCGGCCGATTTCCCTGGTCACAAGCTAACATACCTATAAAA GTTATACCAAAATTTGAAATTTGTCCTATATTTTATCTAAATAGCACGAC GCCGAAGAGGTGTCACAAACTCTTGGCCGATCGATTGTCCCTTCCGATGT TTGCCACCTCTAGTTACCTTTTTGCGCCCCCAAGTACATTCTGGAAGTAC GTGGGGATTTAAGATTTAGCGGCCTTCCTTGCTTGTTTCGCCGCGTTTCT TGCTTCGTTTTTTTTTTTGGGTGAACTGCTCTGCTGTACCGGCACCGGGG TTTGTTCCGTCGCCCTTTTCATTCGTCGTGCTTTTCGTTCAATATTTTTT CTTTTTGTCTCTCTTGTTGCGTGTGTTTTTTTTTGTTCCATCGTCTTCTT TTTTTTCTTTTTGTCTCTCTTGTTGTGTGTGTGTGTGTTTTTTTTTGTTC CATCTCCCTTTTTCATTCGTCGCGCTATTCGTTCAATACAGTACTTGTTT TTTCTTTCTTATTGTCTCTCTTGTTGTGTGTGTGTTTTTTTTTTTCTCTG CTGTGCTCTGCTCTGGTGGCAGGACTCGGAAATAGGGGGGTTCGGCGGGG GGCCCCAGCAACTACCGCACGGAGCCCCCATGTACGCGTCCGTCCTGGCG CTGCTGCTCATCGGGACCCCGGAGGCGTACACCGGCATCGATAGGTGATG AATGACTAGCGCGATGATGTGATGATGTCCGCACAGGGGCGATGGTTCCG TGATGTTTTGATGTTCCGTTTCAACTAAATAAGAGTATGCGTTATAATGT TCCGTTTCAACTAAATAAGAGAGAAGCGTTATAATGTTCCGAGTACGTAG AAACAAAAAGGCAAGTGAGGGGGCCGGGAAGGGAACGGGGGGGGGGGGGG GGGGGCGACGGGGGCTGAAAGAGCCCCGCTTGCACAGAAGAGAGGTGCCG CACAGCGTTCGTTCCCTTTTTCCACCCTCTTTGTGCGCGCTGGACCTGAT TCCTCCCTCCCTTGCCGCCTAGGAGCTTACCCACCCACCCACCCACCACC CACCCACCTCCCCCTTTCCTGCTCCCAATTGTCATCGTCGCCCCACCCTA CAGAGGCTGTCTTGTCATTTGCAGGCCTGCTCTTTTCTCGCCGCTCCCAA ATGTCATCATCATCATCCTGCCCTCTCTTGCTGCTCCCAAGTGTCATCAT CATCATCCTGCTCTCTCTTGTCTTTGTGTGCCACTTGCAGGCCTGCCCTG TACCGCTTCTTCCTGTCGCTCAAGCACGCCTCCGGGGGTTTCCGGATGCA CGACGACGGGGAGGTGGACGCTAGAGGCACCTACACGGTCATCGCGGTCG CGTCGCTGCTCAACATGCTCACGGACGAGCTCACAGAAGGAGTGGCTGAG TTCGCGGTGAGATACCGACATGTGATGTGGATGCGGACAGCTTGTGTATC CACGTGCTTCTGTTATGTTGGGATGCGCGCGGACTTCGAGGTTCATGCGT AAATGTAGAGTCGTTGAAATCGAGGGCAGTTGTTGTCTTGTCTCGTTTTT CGTTTGTTGTTTTGTTTCGTTTTGTTTTGTTTTTGTGTTTTTATATGTCT TTGAAGTTTGGTTGTCTCCTCTCGTTTCGTTTTTTTTTATTTTTGTTTTT ATTTTGTTTTTTATTTTGTTTTTTTAGTTGTTTCTGTTATGACGTGCTTG TTTGTTTTTGAACTCAGCACGCACGTACAGCAGCAGCACCCGAAGTGCCC CTCCCTCTCACTCTCCCGGTCGCTGTGTGTTTGTTCGTGTCTCCCCCCCT AGGTCGGCGGTGCTGGTAAACAGTCTTATGGTGCTGGTAAACAGTCTTAT GGTGCTGGTAAACAGTCTTATGGTGCTGGTAAACAGTCTTATGTTTGGAG AGAGAGAGAGAGAACCTTCCTCCCCGTGTGTACGTAAAATTACTCCAATG GTTTTTCGTAACGCTTTGCCTACTATGTATTGCGAGTGATACATACTACG ATAGCGTACATAGCGCTACAAGTAGTGCTGACTTTTTTCTGTCCCCTGTC CCTGCCGGTTGTCGCATCTTCCCTGTGCCCGTGATTATCACGTAACATAT GATCATCATCATGCTGCTGCTGCTGCTGCTGCTGATGATGATGACGACGA TGCTGGCGATAATAATGATGATGATGATGGTGTGATAGGTCCGGTGCCAG ACGTACGAAGGGGGATTCGGGGGCGAGCCGTGGAACGAGGTGAGAAAAAA AAAAAAAAAAAAAAAAAAAGCCTCGATCGNNNNNNNNNNAAAAATAGAAA TAATATGGAGGGGAAAGATAAGGAGAAAAAAAAAAAAAGAGAAAAAAGGG AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACG CCTCCATCGTCTTGGCAGGCTACATTACCGAGACTACTATAGATGACGAG TTTTTCACTCACGGCCTTTGTCGTGCGGCCACAAGGCGACGATCGAGCTG CGTGGCGTAACTTATATTTTTCGCGGAATACATGGATGTACATAGTTCAC GTCTCAAGTTCGCTGGACTCCTGAAGGTTCGTGCACCACCGCTCCCACGG GTACCATTCTAGAAGTATGGGCGGCATGAGATTGGCTCTCCCAGTAAATC TAGCTTGCCCGTCATATATCGCTTGATTCGGAACCAAGCCCCGTCTGTAG TGTTTTGCTTCTCTGCCCCGAGCGCCGTTAATAAAGTCTTTTACCCAAAA CACGCCACACTTTTTTTTTTTTTTGTATTTTGTGTTTTCTTTTCGCCCGT CGGGGCGCGGGCGTGGGGGGTTTGTTTCGTTGCACCTGCAGGCACACGGC GGCTACACTTTCTGCGCTTTCGCGTCCCTGGTGATCTTGGGGGCGTGCGA TCAGGCGGACCTCGAGGGGCTCCGTAGATGGCTGTGCGCCAGACAGATGC GAGCGGAAGGAGGGTAAGCAAGCAAGCAAGCAAACAAGCTAGATACTTAG CTGCGAAATGAGAGAGAGAAGGGTGGGGGGGGGGGGGCGGTTCAGCAGTA GAGGGAGATATTTGTTTCAACCGTTTGGCCATGATGATGATGAGGGAAGA GGAGGAGGGGAATATAGAAGCAAGGGCGCAAAGAACGAGAGAAAGAGAGA GAGAGAGAGAAGGTGTACACGAACATAGGTACTTCCAAAGCGTGCTGCAG CCATCCATCACCATGGCGACGACGTTTTTTTTGTTTTTTTTTCTCCTCCT CCATGAGCGTTTCTGTCGTCTGCCCCACCGGCCCCCGTCCTCCGCTTCGA CTGAATAGCTAGACGACCCACCCGGGGTCACACAGGTAGTGATGACCCTC GAGTACCCTAAACCCACCCCGGACTCTAAACTATCAATGCACGCTGACCT GCGACACGGGAGTCTGATGATGTCTTTTTTTCGTGACACGCGAGTCTGAT GATGTCTTTTTTTCGTGTGCTCCTGCTCGTGTTGTTTCGTTTCGGTTTCG TTTCGGTTTCGTTTTGCGGTTTCGTTTCAGGTTCCAAGGGAGAACCAACA AGCTCGTGGACGGCTGCTACTCCTTCTGGCAGGGCGGGGCGGTGGCCTTG CTGGACTACGTCACCGCGGGGCGACACAGCGAGGTG
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Coding sequence (CDS) from alignment at S-firma_F_contig10123:1133..5168-

>mRNA_S-firma_F_contig10123.219.1 ID=mRNA_S-firma_F_contig10123.219.1|Name=mRNA_S-firma_F_contig10123.219.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1326bp|location=Sequence derived from alignment at S-firma_F_contig10123:1133..5168- (Sphaerotrichia firma ET2_F female)
ATGATCTACTGGATCCTGCACTCCCTTGACCTCCTCGGCCACTTCCCTGA
GGGGGAGCTGGTGGAGAGAATTCTTCAGACCGTACTGTCCTGCCAGATGA
TCTACTGGATCCTGCACTCCCTTGACCTCCTCGGCCACTTCCCTGAGGGG
GAGCTGGTGGAGAGAATTCTTCAGACCGTACTGTCCTGCCAGGACTCGGA
AATAGGGGGGTTCGGCGGGGGGCCCCAGCAACTACCGCACGGAGCCCCCA
TGTACGCGTCCGTCCTGGCGCTGCTGCTCATCGGGACCCCGGAGGCGTAC
ACCGGCATCGATAGGACTCGGAAATAGGGGGGTTCGGCGGGGGGCCCCAG
CAACTACCGCACGGAGCCCCCATGTACGCGTCCGTCCTGGCGCTGCTGCT
CATCGGGACCCCGGAGGCGTACACCGGCATCGATAGGCCTGCCCTGTACC
GCTTCTTCCTGTCGCTCAAGCACGCCTCCGGGGGTTTCCGGATGCACGAC
GACGGGGAGGTGGACGCTAGAGGCACCTACACGGTCATCGCGGTCGCGTC
GCTGCTCAACATGCTCACGGACGAGCTCACAGAAGGAGTGGCTGAGTTCG
CGGCCTGCCCTGTACCGCTTCTTCCTGTCGCTCAAGCACGCCTCCGGGGG
TTTCCGGATGCACGACGACGGGGAGGTGGACGCTAGAGGCACCTACACGG
TCATCGCGGTCGCGTCGCTGCTCAACATGCTCACGGACGAGCTCACAGAA
GGAGTGGCTGAGTTCGCGGTCCGGTGCCAGACGTACGAAGGGGGATTCGG
GGGCGAGCCGTGGAACGAGGTCCGGTGCCAGACGTACGAAGGGGGATTCG
GGGGCGAGCCGTGGAACGAGGCACACGGCGGCTACACTTTCTGCGCTTTC
GCGTCCCTGGTGATCTTGGGGGCGTGCGATCAGGCGGACCTCGAGGGGCT
CCGTAGATGGCTGTGCGCCAGACAGATGCGAGCGGAAGGAGGGCACACGG
CGGCTACACTTTCTGCGCTTTCGCGTCCCTGGTGATCTTGGGGGCGTGCG
ATCAGGCGGACCTCGAGGGGCTCCGTAGATGGCTGTGCGCCAGACAGATG
CGAGCGGAAGGAGGGTTCCAAGGGAGAACCAACAAGCTCGTGGACGGCTG
CTACTCCTTCTGGCAGGGCGGGGCGGTGGCCTTGCTGGACTACGTCACCG
CGGGGCGACACAGCGAGGTGGTTCCAAGGGAGAACCAACAAGCTCGTGGA
CGGCTGCTACTCCTTCTGGCAGGGCGGGGCGGTGGCCTTGCTGGACTACG
TCACCGCGGGGCGACACAGCGAGGTG
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