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Homology
BLAST of mRNA_S-firma_F_contig10121.218.1 vs. uniprot
Match: D7FIP3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIP3_ECTSI) HSP 1 Score: 328 bits (841), Expect = 1.240e-105 Identity = 191/284 (67.25%), Postives = 221/284 (77.82%), Query Frame = 2
Query: 143 RRDMRRMAASAVVGLLSCDGATAFVPSGHRLGPS-SAMQSSNARRQAVSSCSSRHCMTSDGSGDSNHDHSDSTRTTKKARVPSWSVASRTAAACLATAAILSSSSLPAGAGVGGGRLDTDLLLGKGAAPTSAVMLLADEGDSTSSDGRADVSELVSELKKADRADLVLNSMVKINDVVDADEDGVLENPFAAESIVKGLIDKRRAGGDAWDGNTETAFGILKRKLDPFNVVLLRPYLKIAPFLGGAYYLAAFFVQQKFRDFFPYAYFGAVAVFVAPALIIVLTN 991
++ +RR+ +VG LSC TAFVP+ H LG SA++S+ +R + S TSDG +HD + T +A+ +WS A RTAAACLATAAILSSS LPAGA G + L G+G++P + +M+LADEGD +S+DGRADVS+LV ELKKADR D +LNSMVKINDVVD DEDGVLENPFAAESIVKGLIDKRRAGG+AWD NTETAFGILKRKLDPFNVVLLRPYLKIAPFLGGAYYLA FFVQQKFR FFPYAYFGAVAVFVAPALI++L N
Sbjct: 8 KKSLRRLTMHTLVGFLSCHDGTAFVPAAHMLGGGMSAIRSTTSRLTFPAHRSPPGMTTSDGG--LHHDD----KQTGEAKTSAWSGACRTAAACLATAAILSSS-LPAGAASGSRGVRHHLDGGRGSSPANVLMVLADEGDFSSADGRADVSQLVLELKKADRPDTLLNSMVKINDVVDWDEDGVLENPFAAESIVKGLIDKRRAGGEAWDSNTETAFGILKRKLDPFNVVLLRPYLKIAPFLGGAYYLAVFFVQQKFRGFFPYAYFGAVAVFVAPALIVILAN 284
BLAST of mRNA_S-firma_F_contig10121.218.1 vs. uniprot
Match: A0A836CGK9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGK9_9STRA) HSP 1 Score: 139 bits (351), Expect = 2.070e-35 Identity = 70/138 (50.72%), Postives = 97/138 (70.29%), Query Frame = 2
Query: 584 ADVSELVSELKKADRADLVLNSMVKINDVVDADEDGVLENPFAAESIVKGLIDKRRAGGDA--WDGNTETAFGILKRKLDPFNVVLLRPYLKIAPFLGGAYYLAAFFVQQKFRDFFPYAYFGAVAVFVAPALIIVLTN 991
AD+ ++EL +A AD L +MVK+N+++D+D DG +ENP A E +V+GL K+R W + + A+G+L+R+LDP+N LRPYL +APFLGG YYLAAFFVQQKF + FP AYF V VFVAP L +++ +
Sbjct: 9 ADMDGALAELSRAKDADQTLTAMVKVNEILDSD-DGTMENPLAREIVVRGLSAKKREARTTGEWRDDIDFAYGVLRRRLDPYNTFALRPYLGVAPFLGGLYYLAAFFVQQKFPEAFPLAYFSLVGVFVAPILFLLVNS 145
BLAST of mRNA_S-firma_F_contig10121.218.1 vs. uniprot
Match: A0A7S2XUD1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUD1_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 1.870e-19 Identity = 56/149 (37.58%), Postives = 82/149 (55.03%), Query Frame = 2
Query: 539 MLLADEGDSTSSDGRADVSELVSELKKADRADLVLNSMVKINDVVDADEDGVLENPFAAESIVKGLIDKRRAGGDAWDGNTETAFGILKRKLDPFNVVLLRPYLKIAPFLGGAYYLAAFFVQQKFRDFFPYAYFGAVAVFVAPALIIVL 985
M ++G+S S VSE + LK ++ + N++ I +++ DEDG L + +V+ + +K+ + W E F ++KRKLDP+N V+L PYLK+APF+GGA YLA +VQQ F YAY F AP II L
Sbjct: 106 MQRGEQGESGQSVSVGTVSEAIEALKSSEGPRQISNALEGIYNLIQ-DEDGPLVETADKKLVVQKVREKKASSQAVWTAENEIEFSVIKRKLDPYNTVVLGPYLKVAPFVGGAIYLALIWVQQSLPRVFDYAYIVGALAFAAPIFIIAL 253
BLAST of mRNA_S-firma_F_contig10121.218.1 vs. uniprot
Match: A0A6T5PVA6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5PVA6_HETAK) HSP 1 Score: 84.3 bits (207), Expect = 8.970e-15 Identity = 51/137 (37.23%), Postives = 78/137 (56.93%), Query Frame = 2
Query: 590 VSELVSELKKADR-ADLVLNSMVKINDVVDADEDGVLENPFAAESIVKGLIDKRRAGGDA-WDGNTETAFGILKRKLDPFNVVLLRPYLKIAPFLGGAYYLAAFFVQQKFRD-FFPYAYFGAVAVFVAPALIIVLTN 991
VS++V+++K + D ++ ++N + AD+D VL +P + +V+ LI+K+ D WD +GILKRKLDP+N V L YL +AP+LGG YLA VQ+ F AY F APA+++ L +
Sbjct: 95 VSQIVTDIKTQQKDTDSIIGLFAEVNRM--ADDDEVLIDPKDRKEVVRALIEKKANQADEKWDEQVYNGYGILKRKLDPYNTVALGGYLSVAPYLGGLLYLALVAVQRALPGRAFDVAYVVGALAFFAPAVLLALAS 229
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 2880.D7FIP3 |
| Max annot lvl | 2759|Eukaryota |
| Evalue | 6.29e-110 |
| EggNOG OGs | 2D01M@1|root,2SCF0@2759|Eukaryota |
| Hectar predicted targeting category | chloroplast |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-27_000520.1 |
| Exons | 4 |
| Model size | 1736 |
| Cds size | 882 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815539.5999455-UTR-S-firma_F_contig10121:1675..1787 | 1622815539.5999455-UTR-S-firma_F_contig10121:1675..1787 | Sphaerotrichia firma ET2_F female | UTR | S-firma_F_contig10121 1676..1787 + |
| 1696949400.8145533-UTR-S-firma_F_contig10121:1675..1787 | 1696949400.8145533-UTR-S-firma_F_contig10121:1675..1787 | Sphaerotrichia firma ET2_F female | UTR | S-firma_F_contig10121 1676..1787 + |
| 1622815539.6585746-UTR-S-firma_F_contig10121:4612..5354 | 1622815539.6585746-UTR-S-firma_F_contig10121:4612..5354 | Sphaerotrichia firma ET2_F female | UTR | S-firma_F_contig10121 4613..5354 + |
| 1696949400.8659225-UTR-S-firma_F_contig10121:4612..5354 | 1696949400.8659225-UTR-S-firma_F_contig10121:4612..5354 | Sphaerotrichia firma ET2_F female | UTR | S-firma_F_contig10121 4613..5354 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815539.6108034-CDS-S-firma_F_contig10121:1787..1933 | 1622815539.6108034-CDS-S-firma_F_contig10121:1787..1933 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig10121 1788..1933 + |
| 1696949400.8257334-CDS-S-firma_F_contig10121:1787..1933 | 1696949400.8257334-CDS-S-firma_F_contig10121:1787..1933 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig10121 1788..1933 + |
| 1622815539.6203253-CDS-S-firma_F_contig10121:2337..2797 | 1622815539.6203253-CDS-S-firma_F_contig10121:2337..2797 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig10121 2338..2797 + |
| 1696949400.8355975-CDS-S-firma_F_contig10121:2337..2797 | 1696949400.8355975-CDS-S-firma_F_contig10121:2337..2797 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig10121 2338..2797 + |
| 1622815539.6355345-CDS-S-firma_F_contig10121:3923..3989 | 1622815539.6355345-CDS-S-firma_F_contig10121:3923..3989 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig10121 3924..3989 + |
| 1696949400.8457034-CDS-S-firma_F_contig10121:3923..3989 | 1696949400.8457034-CDS-S-firma_F_contig10121:3923..3989 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig10121 3924..3989 + |
| 1622815539.6483033-CDS-S-firma_F_contig10121:4402..4612 | 1622815539.6483033-CDS-S-firma_F_contig10121:4402..4612 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig10121 4403..4612 + |
| 1696949400.8557646-CDS-S-firma_F_contig10121:4402..4612 | 1696949400.8557646-CDS-S-firma_F_contig10121:4402..4612 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig10121 4403..4612 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10121.218.1 >prot_S-firma_F_contig10121.218.1 ID=prot_S-firma_F_contig10121.218.1|Name=mRNA_S-firma_F_contig10121.218.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=294bp
MTTTANIRCWRRDMRRMAASAVVGLLSCDGATAFVPSGHRLGPSSAMQSS NARRQAVSSCSSRHCMTSDGSGDSNHDHSDSTRTTKKARVPSWSVASRTA AACLATAAILSSSSLPAGAGVGGGRLDTDLLLGKGAAPTSAVMLLADEGD STSSDGRADVSELVSELKKADRADLVLNSMVKINDVVDADEDGVLENPFA AESIVKGLIDKRRAGGDAWDGNTETAFGILKRKLDPFNVVLLRPYLKIAP FLGGAYYLAAFFVQQKFRDFFPYAYFGAVAVFVAPALIIVLTN* back to topmRNA from alignment at S-firma_F_contig10121:1676..5354+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-firma_F_contig10121.218.1 ID=mRNA_S-firma_F_contig10121.218.1|Name=mRNA_S-firma_F_contig10121.218.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3679bp|location=Sequence derived from alignment at S-firma_F_contig10121:1676..5354+ (Sphaerotrichia firma ET2_F female) GCAGGGTATACCCACAAAATACGACCCGTTTTACCGGGGCCCCTTTTGAT
CGACTTCGAGGTTCCAGGTTCCAGTACAGCAGTAGCTCTCCTGAGTCTGG
ATAGACCCTCTGATGACCACCACCGCCAACATTCGCTGCTGGAGGCGAGA
CATGCGGCGGATGGCAGCTAGCGCGGTCGTGGGATTGCTCAGCTGTGATG
GTGCAACAGCGTTCGTTCCTTCGGGACACCGACTTGGCCCATCATCGGCT
ATGCAGAGGTGTGCAGGAGCAGTCTCGGGAGAGACCTGGCAGACGCGAAC
TGTGGTGATGACTGTGGCGATTCTGTGTCCTTTGCTGCTTAGTTGTGATT
CGAAATGTTGTTGTGGCTCCCGGTGGGCGAGACATGGGCTTTTGTGCCCG
CGGACTCGTGCAATCATGCATGGGAGACAGCGGCTCATGAAATGGCAGAA
ACATGTGTCGAACACCGGCGCATCTCCCTCGCAAAAGACACCGCCACCGA
CCAAAACGCGAGCGCAGGCGCGTGTATTCGTTTGACGTTGCCGAAGCTGC
AGACTGGTGTTTTTTACGATGCATTCCAACACCGTTTCCTGCCGCCGCCG
ATCCTGCCTCCTCTTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCC
TTCCCGACTCAGCAGCAACGCCAGACGGCAGGCGGTCTCGTCCTGCAGCT
CACGACACTGCATGACCAGCGACGGCAGCGGGGACAGCAACCACGATCAC
AGCGACAGCACACGAACCACGAAAAAGGCGAGAGTTCCTTCCTGGTCAGT
AGCCTCCAGGACCGCGGCGGCCTGCCTGGCCACCGCAGCCATCCTTTCCT
CCTCCTCCTTGCCAGCGGGCGCCGGGGTCGGCGGCGGTCGCTTGGACACG
GACTTGCTGCTCGGGAAGGGGGCGGCGCCGACAAGCGCGGTTATGCTGTT
GGCCGACGAAGGCGATTCCACGTCTTCGGATGGCAGGGCTGACGTGAGTG
AGCTGGTGTCGGAGCTGAAGAAGGCCGACAGAGCCGACCTGGTGCTGAAC
TCGATGGTGAAGATCAACGACGTGGTGGACGCGGACGAGGACGGGGTGCT
GGAGAACCCGTTCGCGGCTGAGGTGTGGTGCCCGTGCCCAGTGGTGCTCA
AAATACAGAGGTAGATTTGGAAGTACTGTCTGCTACTGTAACTCGCTCTT
TTGAGTCGTAGGACCCTCAATGCCGTTCAAGGATTTTGTTCAGCAGCAGT
TTCAGGTGCTGACAACGGTGGTTCTTATTTATATACTAAAATCAAGACAA
TAAGGCCGAGAATAACGAAAACCAATTTCCCGTTGAACGTTTACCAGTTT
CGGGCATGGAATCACTAGAGCATACCATGGAGAGGTCACGCGTGTGTTGG
CGCGCTCAGATCTGCTGGTGGAACGGAGAAATCGAAGGTCGTAGCAGTCG
CTGGACTGTCAGCAAATTTGATAAAAAACGTTTGTCACGGCTGTGCGTGC
CTCCACAGACCGTAACCGCCTGATCTGCGGGTCCTCAGCAGTAGCTGGTG
TGGTGTATCAGCTACTGCTGTAGACCCGCAGTTCAGGAGACTGGGGTCCG
TGGTGACGAGCACAGCAGTGGGATACAGGTTGTGTCGATCAATTTGCGGA
GAATCTCCGTCGCTGCTACGACTCTCGATATCACCCCCAAAGCAGCGGAT
TTGAGCGTTCCAACGCACACGTGCCGGTGCTCTATTAATAGAGTGTTGTC
TAGTGGTTCCATGCCCGAAACTGCTTACCCTACAAAGGCAGACCTTAGTC
GAGCGCCCGCGGTTTTGGCTCCTTGACTTGATTTTAGACTGATCAAGACT
GGTGAGAATTTTCATCTTGATTATACAAAAGAGCCTGGAGGTAGACTACA
TACGTTGGGTAGGTGTGTACAGAGCACCCTACGCGAGAACCACCGTTTCT
TCTCGCGCCCAGTGCCTTCCTACTGGTTTGATGTATCCCGTGTGTGTTTC
GTGGTTGCTCGTTCGTTCTTTTTCAAACCCAGCCAACCCAAAGATCGGTT
TTCATCACCGCCTTAAGGCGTCCAGCACCTTCAAGTTTCCCGCGAAGGGT
TTGATGCCAGTACTCGAGGCCAAAATGAATCAAAACAACAGCTGGCTAGT
GTACAATTGTCCTCCTTTGCCTGACCGTGCGTACGCCCGAGTTGAGGCAT
TTTGAACCCACCTTGGCCCGCCCCCCCCCCCGTTCCGCGCGTACACAGAG
CATCGTCAAAGGGCTGATCGACAAACGGAGGGCTGGAGGCGACGCCTGGG
ATGGCAACACGGAGGTGGGAGGGGGCGGCGATCAAGTGCTGATCGCGCTT
GACAGCAGTGTTGCAACAGCAGTAGTAGGTCATACCGCCGTGTCGATGCG
GTACTGGTCCGTCTGCGAGTCTTCTCTGGCTGCCTTGTTTTCAGCCTATC
GCCCTGCTGCTGACCTATCCAATGGCGGACAACCAGCGACTTGACTTGGC
CGGTACATGCCCCCAAGACAGAGGTTGCGCTTGTTCTTTGTTGTTCGCAT
GCCATTCTCTCGTGTCGCGTACGGCTTACAAAGGTGGTCGAACAGCAACA
GACCACGGTTTCGGCATCTAGCAGCTTAGGAACCACGTTCTCTTCCAACC
GCCAACTGATCCGACCTCCCCATCCCCATCCCCATCACCCCCCTACATTC
TGCTCGCTCTTTTGGTGCATGGGACAGACTGCGTTTGGCATCTTGAAGCG
AAAACTGGATCCGTTCAACGTGGTCCTTCTTCGCCCGTACCTCAAGATTG
CGCCTTTCTTGGGAGGCGCGTACTACCTGGCGGCGTTCTTCGTGCAGCAG
AAGTTCAGAGACTTTTTCCCGTACGCGTATTTCGGCGCGGTCGCCGTTTT
CGTGGCCCCGGCGCTCATCATTGTGCTGACAAATTGATTTCGTGCCAACG
CCGAAAAGAGAGAATCGGGGAGAGTTTCTGCTTGACTTTTTTCGATACTC
GAGCGGGCGGGCGGACGTTGACGGTGCAGCGAGTTGCCCGTGCCACAGCA
TGATTCTTCAGTTTTTAGACGGGGTGAAGAGGGCGAGAACGGCTAGGCCT
GCTTGCGGCGAGTGTTTATTTCGTTGCCTTTCTTTTCAGTACACCTACGT
ATCTTACGTTCGTTCACTGTTTGGTTGTTTTTCTGAAAAGCGAGTATCAA
CTTTCGACATGAACGTGTGCTCTTGGTGAAGATAGAAACTTTGGTTGGCT
CCTCAGGAATTCGAATGGATCCTGTCTTAGTGGACGCCTTGTAGCTGGGG
GTGGGGGGGGCGGCGTCATGGATTCTTGCGCACCATGCAGATCATGCCAC
TGCTGCCATAGACTTGTTATCCTGGGTTCGTTTGCGGGAATTTTCTGAAT
TTTTGGAAAGGGAGAGGACGCATACGGCTGACGTTTTGTAGAAATTTTAT
TCAAATCTCGCGAACCTTTGAACGCCAACATCCACGGCTTCTGCGAGTCC
CGCGATAAGCGTTTGGGTATCATGATGATGGAATATACCGCAGCGGGGAG
CTCTCCCGTTCTGGCGGAAACGACCTCACTACCTCGAAAATGTTTCATGA
CAACTGGAGAGAGAGCCCTTCTACCATATGGGTTTGACGAAAGCATATTG
CCCTGGTCGCGCCGGTGTTTATGGCGGAG back to topCoding sequence (CDS) from alignment at S-firma_F_contig10121:1676..5354+ >mRNA_S-firma_F_contig10121.218.1 ID=mRNA_S-firma_F_contig10121.218.1|Name=mRNA_S-firma_F_contig10121.218.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1764bp|location=Sequence derived from alignment at S-firma_F_contig10121:1676..5354+ (Sphaerotrichia firma ET2_F female) ATGACCACCACCGCCAACATTCGCTGCTGGAGGCGAGACATGCGGCGGAT GGCAGCTAGCGCGGTCGTGGGATTGCTCAGCTGTGATGGTGCAACAGCGT TCGTTCCTTCGGGACACCGACTTGGCCCATCATCGGCTATGCAGAGATGA CCACCACCGCCAACATTCGCTGCTGGAGGCGAGACATGCGGCGGATGGCA GCTAGCGCGGTCGTGGGATTGCTCAGCTGTGATGGTGCAACAGCGTTCGT TCCTTCGGGACACCGACTTGGCCCATCATCGGCTATGCAGAGCAGCAACG CCAGACGGCAGGCGGTCTCGTCCTGCAGCTCACGACACTGCATGACCAGC GACGGCAGCGGGGACAGCAACCACGATCACAGCGACAGCACACGAACCAC GAAAAAGGCGAGAGTTCCTTCCTGGTCAGTAGCCTCCAGGACCGCGGCGG CCTGCCTGGCCACCGCAGCCATCCTTTCCTCCTCCTCCTTGCCAGCGGGC GCCGGGGTCGGCGGCGGTCGCTTGGACACGGACTTGCTGCTCGGGAAGGG GGCGGCGCCGACAAGCGCGGTTATGCTGTTGGCCGACGAAGGCGATTCCA CGTCTTCGGATGGCAGGGCTGACGTGAGTGAGCTGGTGTCGGAGCTGAAG AAGGCCGACAGAGCCGACCTGGTGCTGAACTCGATGGTGAAGATCAACGA CGTGGTGGACGCGGACGAGGACGGGGTGCTGGAGAACCCGTTCGCGGCTG AGCAGCAACGCCAGACGGCAGGCGGTCTCGTCCTGCAGCTCACGACACTG CATGACCAGCGACGGCAGCGGGGACAGCAACCACGATCACAGCGACAGCA CACGAACCACGAAAAAGGCGAGAGTTCCTTCCTGGTCAGTAGCCTCCAGG ACCGCGGCGGCCTGCCTGGCCACCGCAGCCATCCTTTCCTCCTCCTCCTT GCCAGCGGGCGCCGGGGTCGGCGGCGGTCGCTTGGACACGGACTTGCTGC TCGGGAAGGGGGCGGCGCCGACAAGCGCGGTTATGCTGTTGGCCGACGAA GGCGATTCCACGTCTTCGGATGGCAGGGCTGACGTGAGTGAGCTGGTGTC GGAGCTGAAGAAGGCCGACAGAGCCGACCTGGTGCTGAACTCGATGGTGA AGATCAACGACGTGGTGGACGCGGACGAGGACGGGGTGCTGGAGAACCCG TTCGCGGCTGAGAGCATCGTCAAAGGGCTGATCGACAAACGGAGGGCTGG AGGCGACGCCTGGGATGGCAACACGGAGAGCATCGTCAAAGGGCTGATCG ACAAACGGAGGGCTGGAGGCGACGCCTGGGATGGCAACACGGAGACTGCG TTTGGCATCTTGAAGCGAAAACTGGATCCGTTCAACGTGGTCCTTCTTCG CCCGTACCTCAAGATTGCGCCTTTCTTGGGAGGCGCGTACTACCTGGCGG CGTTCTTCGTGCAGCAGAAGTTCAGAGACTTTTTCCCGTACGCGTATTTC GGCGCGGTCGCCGTTTTCGTGGCCCCGGCGCTCATCATTGTGCTGACAAA TTGAACTGCGTTTGGCATCTTGAAGCGAAAACTGGATCCGTTCAACGTGG TCCTTCTTCGCCCGTACCTCAAGATTGCGCCTTTCTTGGGAGGCGCGTAC TACCTGGCGGCGTTCTTCGTGCAGCAGAAGTTCAGAGACTTTTTCCCGTA CGCGTATTTCGGCGCGGTCGCCGTTTTCGTGGCCCCGGCGCTCATCATTG TGCTGACAAATTGA back to top
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