mRNA_S-firma_F_contig10117.213.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10117.213.1
Unique NamemRNA_S-firma_F_contig10117.213.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10117.213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10117contigS-firma_F_contig10117:493..2153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size249
Cds size249
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815539.0902586-CDS-S-firma_F_contig10117:492..5771622815539.0902586-CDS-S-firma_F_contig10117:492..577Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10117 493..577 -
1696949400.3283281-CDS-S-firma_F_contig10117:492..5771696949400.3283281-CDS-S-firma_F_contig10117:492..577Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10117 493..577 -
1622815539.101131-CDS-S-firma_F_contig10117:1989..21531622815539.101131-CDS-S-firma_F_contig10117:1989..2153Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10117 1990..2153 -
1696949400.3360188-CDS-S-firma_F_contig10117:1989..21531696949400.3360188-CDS-S-firma_F_contig10117:1989..2153Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10117 1990..2153 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10117.213.1prot_S-firma_F_contig10117.213.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10117 493..2153 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10117.213.1

>prot_S-firma_F_contig10117.213.1 ID=prot_S-firma_F_contig10117.213.1|Name=mRNA_S-firma_F_contig10117.213.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=83bp
TAHTTCRACAAGRYHAAQTDVECTPCALGFANGETNMTACPECVPGQFAS
TTASTECNQCPRGLFQEHEGQTVCLDCPGNSF*
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mRNA from alignment at S-firma_F_contig10117:493..2153-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10117.213.1 ID=mRNA_S-firma_F_contig10117.213.1|Name=mRNA_S-firma_F_contig10117.213.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1661bp|location=Sequence derived from alignment at S-firma_F_contig10117:493..2153- (Sphaerotrichia firma ET2_F female)
ACGGCCCACACAACCTGCAGGGCATGCGCCGCCGGGCGCTACCACGCTGC
TCAGACGGACGTTGAGTGCACACCGTGTGCGCTGGGGTTTGCCAACGGTG
AAACCAACATGACGGCATGCCCAGAGTGTGTGCCGGGCCAGTTTGCGTCC
ACCACGGCCTCCACGTCTTGGTGCGCACCGCATAGCGGGCTGACGCGTGC
ACGTGGTCACCCCCTCCCCCCACCCCCCTCAGCGCTGACTGCCCGACGGG
TACCTTCACCGATGAACCCCGCCAGTCCGAGTGCGAGTCCTGTGCAGACG
ACAACACGCATGCCAGCTCCACGGGCTTGTCCACGTGTTCGTCCTGCGAA
GCTGGCAAGGTGACCAGCAACAAGGTCACGTGTGACGCGTGGTGTGTGTG
TTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTCCGTGGTGCTGTGGTTGTG
TTACCTGCAGCCCCCCAGCTTGCCCGGCTTGTTTCATTCCGGCAACAACG
CAACGTGAGTGCGGTTGCAGTTGTTCCAACTTGCCACATTTCATACCCCC
TGCAGCGAATGCTCACCGTGTTCCCCTGGCTACTACACCCCGAGCACAAC
CATGAGCGCTTGCCTCGCGTGTGACCTTGGGTACTTTTCGCCATCCATTT
TACGTGCGTTGGTTGGCCACTTTGGGGTGTGTGGTCTGACCCGCCCCCAC
AACAGGGAGTGTTTGTGCGGCCTGCGCGCCCGGGTTTGCCGCGAACCAGC
TCGCCACCTCCGCTTGCTTTTCTTGTGTTGGCAACGCCGAAGCTCGTGGG
TCCGCGTTGACGGCCTGTGGGGCATGTGAGCACGGCACGGTGGCCAAGAA
CTTTGCAAGCTGTAATGAGTGCCCGGCGGGGACGTTCCACGCCCAGCAGC
CGGACACCGCGTGCACGGTTGGTTTGGGGTGCGGGTGTTGGGGTTGCTGG
GTGCTTGACTAACTGGCACCCCCTTGCAGGACTGTTTGTCTGGGAAGTAC
CAGGGCGAGACTGGGAAAACGCAGTGCCTGGAATGCCCCCTGGGCACGTT
TGCCACCAACCCCAAGTGAGTGTGGCGACGGGTGCCTGGGGGGCCAATCC
CTTCACCCCAGTGTTTTTATGTGTGCAGGCAAGCCGCGTGTCGGGCGTGC
CCCGGAGGAAAGTTCCAGGACTTGATTCAGCAGCCCACCTGCAAGGACTG
CTTCGGAAACTACGTAACGCCGGACCCCGAAGAAGGCTCCGTCGGCGTGT
CAGTTTGCACCATTGTACGCCCTCCCTTTCATGCGTTTCTGCGCAACCAT
ACCTCCACCCCCCCCCCCACCAGTGCGACCATGGCAAAATCCGCCTCAAC
AACCGTAAGACGTGCAGCGACTGCCCCAAGGGGCGTTATCACGCCAACCA
AGACGACGAGCAATGCACGCAGTGCCTGCCGGGGTATTTTGCGCCGCAGG
CGGGCTTGTCCACCTGCACCGCGTGCCCACGGGGCTACTTTTCGGCGATT
GGCACATCGTGGGTTTGGGGATGGGGAGTTGGGGGGGTGCTTGTGCAGTA
GATGTTCACGACCCTCCCATTCTCAGGGAGTGCAATCAATGCCCCCGTGG
CCTGTTCCAAGAGCATGAAGGTCAAACCGTGTGCCTGGACTGCCCCGGCA
ACTCATTCTGA
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Coding sequence (CDS) from alignment at S-firma_F_contig10117:493..2153-

>mRNA_S-firma_F_contig10117.213.1 ID=mRNA_S-firma_F_contig10117.213.1|Name=mRNA_S-firma_F_contig10117.213.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=498bp|location=Sequence derived from alignment at S-firma_F_contig10117:493..2153- (Sphaerotrichia firma ET2_F female)
ACGGCCCACACAACCTGCAGGGCATGCGCCGCCGGGCGCTACCACGCTGC
TCAGACGGACGTTGAGTGCACACCGTGTGCGCTGGGGTTTGCCAACGGTG
AAACCAACATGACGGCATGCCCAGAGTGTGTGCCGGGCCAGTTTGCGTCC
ACCACGGCCTCCACACGGCCCACACAACCTGCAGGGCATGCGCCGCCGGG
CGCTACCACGCTGCTCAGACGGACGTTGAGTGCACACCGTGTGCGCTGGG
GTTTGCCAACGGTGAAACCAACATGACGGCATGCCCAGAGTGTGTGCCGG
GCCAGTTTGCGTCCACCACGGCCTCCACGGAGTGCAATCAATGCCCCCGT
GGCCTGTTCCAAGAGCATGAAGGTCAAACCGTGTGCCTGGACTGCCCCGG
CAACTCATTCTGAGGAGTGCAATCAATGCCCCCGTGGCCTGTTCCAAGAG
CATGAAGGTCAAACCGTGTGCCTGGACTGCCCCGGCAACTCATTCTGA
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