mRNA_S-firma_F_contig10109.201.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10109.201.1
Unique NamemRNA_S-firma_F_contig10109.201.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig10109.201.1 vs. uniprot
Match: A0A6H5JP50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP50_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 5.370e-49
Identity = 87/129 (67.44%), Postives = 108/129 (83.72%), Query Frame = 3 
Query:  717 REKVDKSLDSGSSGPEAFQLLLRHLAEHFDTGDGQASFMRLQSFGVPNGTPFSDYLRSFRLLVSSVTGSERVLAPSVSMVVELVRQSVKRQYPTMSPLIYSGKLATAVTPFDSIAGMWEAFSSFSTNAT 1103
            R++V + LD G++GPEAF LLLR L+E FD GD Q SF+RLQ FGV NGT F+DYLR+FRLLVSSVTGSERVLAPSVSMV+E+VR SV +Q+P+++P++Y G LATAVTPFDSI  MW+AF+  +TN T
Sbjct:  116 RQQVKRRLDDGATGPEAFTLLLRLLSEQFDVGDRQESFLRLQEFGVSNGTLFADYLRAFRLLVSSVTGSERVLAPSVSMVLEIVRNSVSKQFPSLAPMLYPGDLATAVTPFDSIDAMWQAFAPLATNKT 244
[Close]
BLAST of mRNA_S-firma_F_contig10109.201.1 vs. uniprot
Match: A0A6H5JZJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZJ8_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 8.990e-42
Identity = 82/130 (63.08%), Postives = 101/130 (77.69%), Query Frame = 3 
Query:  717 REKVDKSLDSGSSGPEAFQLLLRHLAEHFDTGDGQASFMRLQSFGVPNGTPFSDYLRSFRLLVSSVTGSERVLAPSVSMVVELVRQSVKRQYPTMSPLIYSGKLATAVTPFDSIAG-MWEAFSSFSTNAT 1103
            +++V +SLD  + GP+AFQLLLRHLAEHFD GD Q SF+RLQ  G  +G PF+DYLR+FR  VSSVTGSER L  SVSMV+E+VR SV +Q+P+++PL Y G LATAVTPF SIA  M EAF+  +TN T
Sbjct:  115 KQQVKRSLDGEAPGPDAFQLLLRHLAEHFDVGDRQESFLRLQQLGAADGIPFADYLRAFRFFVSSVTGSERTLVRSVSMVLEIVRNSVDKQFPSLAPLWYPGVLATAVTPFKSIAVIMCEAFAPLATNKT 244
[Close]
BLAST of mRNA_S-firma_F_contig10109.201.1 vs. uniprot
Match: A0A6H5JE42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE42_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 1.710e-37
Identity = 69/99 (69.70%), Postives = 85/99 (85.86%), Query Frame = 3 
Query:  717 REKVDKSLDSGSSGPEAFQLLLRHLAEHFDTGDGQASFMRLQSFGVPNGTPFSDYLRSFRLLVSSVTGSERVLAPSVSMVVELVRQSVKRQYPTMSPLI 1013
            R++V +SLD G+ GP+AFQLLLRHLAE FD GD Q S +RLQ FGV +GTPF+DYLR+FRLLVSSVT SER LAPSVSMV+E+VR SV +Q+P++SPL+
Sbjct:  115 RQQVKRSLDGGAPGPDAFQLLLRHLAEQFDVGDRQESVLRLQQFGVADGTPFADYLRAFRLLVSSVTDSERTLAPSVSMVLEIVRNSVDKQFPSLSPLL 213
[Close]
BLAST of mRNA_S-firma_F_contig10109.201.1 vs. uniprot
Match: A0A6H5K3M2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3M2_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 4.710e-11
Identity = 38/64 (59.38%), Postives = 45/64 (70.31%), Query Frame = 3 
Query:  717 REKVDKSLDSGSSGPEAFQLLLRHLAEHFDTGDGQASFMRLQSFGVPNGTPF---SDYLRSFRL 899
            R++V + LD G++GPEAF LLLR L E FD GD Q SF+RLQ FGV NGT F     YL +FRL
Sbjct:  180 RQQVKRRLDDGATGPEAFTLLLRLLLEQFDVGDRQESFLRLQQFGVSNGTLFVYFKYYLWAFRL 243
[Close]
BLAST of mRNA_S-firma_F_contig10109.201.1 vs. uniprot
Match: A0A6H5KNG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNG1_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.760e-8
Identity = 42/124 (33.87%), Postives = 64/124 (51.61%), Query Frame = 3 
Query:  732 KSLDSGSSGPEAFQLLLRHLAEHFDTGDGQASFMRLQSFGVPNGTPFSDYLRSFRLLVSSVTGSERVLAPSVSMVVELVRQSVKRQYPTMSPLIYSGKLATAVTPFDSIAGMWEAFSSFSTNAT 1103
            +++DSG SGP+A QLLLR +     T        +LQ+F VP GT F  YL   ++LV SV   + V       +   V+  V  QY T++  ++ G+   A+ P+DS+  + EA    + N T
Sbjct:   88 RAMDSGMSGPDALQLLLRAVCSGLSTVTPALVLQQLQNFAVPAGTTFKAYLEDLKVLVESV---QMVGFAEDGTLQVAVKAGVTDQYATLTAPVFHGRNTQAL-PYDSLESLMEALDDMTDNTT 207
[Close]
BLAST of mRNA_S-firma_F_contig10109.201.1 vs. uniprot
Match: A0A6H5J7M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7M0_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 5.750e-7
Identity = 33/64 (51.56%), Postives = 41/64 (64.06%), Query Frame = 3 
Query:  717 REKVDKSLDSGSSGPEAFQLLLRHLAEHFDTGDGQASFMRLQ-------SF-GVPNGTPFSDYL 884
            R+ V  SLD G+ GP+AFQL LRHLAE FD GD Q SF+RLQ       SF G+ +G P   ++
Sbjct:  115 RQLVKGSLDGGTPGPDAFQLPLRHLAEQFDVGDRQESFLRLQQRCSRWYSFRGLSSGFPLVSFV 178
[Close]
BLAST of mRNA_S-firma_F_contig10109.201.1 vs. uniprot
Match: D7G674_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G674_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 5.090e-5
Identity = 35/114 (30.70%), Postives = 57/114 (50.00%), Query Frame = 3 
Query:  747 GSSGPEAFQLLLRHLAEHFDTGDGQASFMRLQSFGVPNGTPFSDYLRSFRLLVSSVTGSERVLAPSVSMVVELVRQSVKRQYPTMSPLIYSGKLATAVTPFDSIAGMWEAFSSF 1088
            GS+G EA   L   L     +   +     LQ+F VP GTP+S+YL +   LV +V     ++ P  + +   VR+SV  QY  ++  ++ GK    + PFD+I  + +   +F
Sbjct:    4 GSTGREALTFLTSALGRVVSSSSPEKLVYDLQTFTVPTGTPYSEYLTTLHGLVHNVRNLG-IVTPQDNTIQLAVRESVSDQYSVLTASVFKGK-QLGLVPFDNIDTLMQELRNF 115
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10109.201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JP50_9PHAE5.370e-4967.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZJ8_9PHAE8.990e-4263.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JE42_9PHAE1.710e-3769.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3M2_9PHAE4.710e-1159.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNG1_9PHAE1.760e-833.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J7M0_9PHAE5.750e-751.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G674_ECTSI5.090e-530.70CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10109contigS-firma_F_contig10109:2122..3846 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1104
Cds size741
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10109.201.1prot_S-firma_F_contig10109.201.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10109 2484..3846 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815538.228083-UTR-S-firma_F_contig10109:2121..24831622815538.228083-UTR-S-firma_F_contig10109:2121..2483Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10109 2122..2483 -
1696949399.5797677-UTR-S-firma_F_contig10109:2121..24831696949399.5797677-UTR-S-firma_F_contig10109:2121..2483Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10109 2122..2483 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815538.2390552-CDS-S-firma_F_contig10109:2483..24991622815538.2390552-CDS-S-firma_F_contig10109:2483..2499Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10109 2484..2499 -
1696949399.5921562-CDS-S-firma_F_contig10109:2483..24991696949399.5921562-CDS-S-firma_F_contig10109:2483..2499Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10109 2484..2499 -
1622815538.2509432-CDS-S-firma_F_contig10109:3121..38461622815538.2509432-CDS-S-firma_F_contig10109:3121..3846Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10109 3122..3846 -
1696949399.6006181-CDS-S-firma_F_contig10109:3121..38461696949399.6006181-CDS-S-firma_F_contig10109:3121..3846Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10109 3122..3846 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10109.201.1

>prot_S-firma_F_contig10109.201.1 ID=prot_S-firma_F_contig10109.201.1|Name=mRNA_S-firma_F_contig10109.201.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=247bp
PSFAAPTASSAPTAPPVLASLPARKQAYSNTDKQLARARIKRVLEKGDRN
FIVANFSNLSEQSCGEYPEHLTAQVQKHSLALLQVLTFDNAGLTLEQVIT
TARRVSSETEVLIVNLLKALREAHRNARRPCSWHADVQVPWADERATSSA
MPPPQAGGVTSVGGGSSSDGSRDNPRRPEDRFRPSSSSSADGASDSSSGP
SGGKHVRSRARQGTKASGGAPASSGSDTSPRRKSVKPTSGKRLTSH*
back to top

mRNA from alignment at S-firma_F_contig10109:2122..3846-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10109.201.1 ID=mRNA_S-firma_F_contig10109.201.1|Name=mRNA_S-firma_F_contig10109.201.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1725bp|location=Sequence derived from alignment at S-firma_F_contig10109:2122..3846- (Sphaerotrichia firma ET2_F female)
CCGTCCTTTGCGGCTCCCACGGCTTCTTCGGCTCCCACGGCTCCTCCTGT
TCTGGCGTCTCTTCCGGCTAGGAAGCAAGCCTATTCGAACACAGATAAGC
AACTGGCTAGGGCGCGGATCAAACGCGTCCTTGAGAAGGGAGACCGCAAC
TTCATTGTGGCTAACTTCAGCAACCTCTCCGAACAAAGCTGCGGCGAGTA
CCCGGAGCATCTCACCGCCCAGGTGCAGAAGCACTCACTGGCGCTGCTGC
AGGTCCTCACTTTTGATAACGCCGGTCTCACCCTGGAACAAGTGATCACC
ACCGCTCGTCGCGTTTCGTCGGAAACCGAGGTGCTCATCGTTAACCTGCT
GAAAGCGCTGCGTGAGGCCCACCGCAACGCTCGTCGTCCGTGCTCCTGGC
ACGCTGATGTCCAGGTCCCTTGGGCGGATGAGAGGGCCACTTCTTCGGCG
ATGCCGCCGCCGCAGGCTGGCGGTGTCACGAGTGTTGGAGGAGGGTCGTC
TAGCGACGGCTCTCGGGACAACCCGCGTCGCCCTGAGGACCGCTTCCGGC
CGTCGTCTTCGTCATCTGCGGATGGAGCGAGCGACTCTTCTTCCGGTCCT
TCTGGCGGCAAGCACGTCCGTTCTCGGGCTCGTCAGGGCACCAAGGCTTC
AGGCGGTGCGCCGGCTAGTTCTGGCTCTGACACTAGCCCTCGGCGCAAGT
CTGTCAAACCTACTTCAGGGAAAAGGCAAGTTTCTTCTCGGGTGGAGGTT
CCTTCTTTGTTGGACATAGCCGTCAGTGAGCAGCTCAAACTCCTTCTGCG
CAATGCCGCTTCATCAGAAACCGCCGTTTCCCACTCTCAAGTGTTGCCCG
AGGCTGCTTTTTCTGCTGAGCCCACAGCGGTCGCTCCCGCTGTTCAGGCA
TCTTCTTCGGTTGCCACCCCTGCTTTTTCGCATGGGGTTCCTCTTTCAGT
ACCGGTAGACGACAGCGCTTTGCCTGTCTCTTCATCCACCGCTCATGCCC
TTCAGGCTGCCGGCGATGCCACCGCGGCAGCCGATGAACTAGTGCGCGTC
TCCAAAGTTCAACGAGCTTATATCACGATGCCCCTCAAATTCATCGGGAA
AGTGGCCTCTTTGCCCTTCTCTCCGTCGTTGCCGGAGGCTGATGCCTACT
CGCAACTCATCCGGACTGTCAAAATCGCTTTGAACGATATTTTGCTGTAC
TGTGATGAATCTGGTGTCACCATCGATTCGCTCGATTATGTCCGAGGCTG
GGAACGACCACTCGAAAAGAAGCTTTTGATGGCTATTTCCGAAGACAAGT
CTACCACTTCTGACCTCACCCTTTCCATCACCGACTACTTCTCTCAGGTT
GACAAGTCACTAGACTCGGGTTCTTCCGGCCCAGAGGCGTTCCAGCTTCT
TCTGCGTCACCTCGCGGAGCACTTCGATACGGGAGACGGACAAGCGTCTT
TCATGCGCCTTCAGTCTTTTGGCGTTCCGAACGGCACTCCTTTTTCGGAT
TACCTTCGATCGTTTCGTTTGCTGGTTTCTTCTGTGACTGGGTCTGAGCG
AGTGTTAGCACCTAGCGTGTCTATGGTAGTCGAATTAGTGCGGCAATCGG
TCAAGCGTCAATACCCGACGATGTCTCCTCTGATTTACTCTGGTAAATTA
GCTACGGCTGTGACCCCTTTCGATAGCATCGCGGGCATGTGGGAGGCCTT
TTCTTCGTTTTCGACTAATGCGACG
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig10109:2122..3846-

>mRNA_S-firma_F_contig10109.201.1 ID=mRNA_S-firma_F_contig10109.201.1|Name=mRNA_S-firma_F_contig10109.201.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1482bp|location=Sequence derived from alignment at S-firma_F_contig10109:2122..3846- (Sphaerotrichia firma ET2_F female)
CCGTCCTTTGCGGCTCCCACGGCTTCTTCGGCTCCCACGGCTCCTCCTGT
TCTGGCGTCTCTTCCGGCTAGGAAGCAAGCCTATTCGAACACAGATAAGC
AACTGGCTAGGGCGCGGATCAAACGCGTCCTTGAGAAGGGAGACCGCAAC
TTCATTGTGGCTAACTTCAGCAACCTCTCCGAACAAAGCTGCGGCGAGTA
CCCGGAGCATCTCACCGCCCAGGTGCAGAAGCACTCACTGGCGCTGCTGC
AGGTCCTCACTTTTGATAACGCCGGTCTCACCCTGGAACAAGTGATCACC
ACCGCTCGTCGCGTTTCGTCGGAAACCGAGGTGCTCATCGTTAACCTGCT
GAAAGCGCTGCGTGAGGCCCACCGCAACGCTCGTCGTCCGTGCTCCTGGC
ACGCTGATGTCCAGGTCCCTTGGGCGGATGAGAGGGCCACTTCTTCGGCG
ATGCCGCCGCCGCAGGCTGGCGGTGTCACGAGTGTTGGAGGAGGGTCGTC
TAGCGACGGCTCTCGGGACAACCCGCGTCGCCCTGAGGACCGCTTCCGGC
CGTCGTCTTCGTCATCTGCGGATGGAGCGAGCGACTCTTCTTCCGGTCCT
TCTGGCGGCAAGCACGTCCGTTCTCGGGCTCGTCAGGGCACCAAGGCTTC
AGGCGGTGCGCCGGCTAGTTCTGGCTCTGACACTAGCCCTCGGCGCAAGT
CTGTCAAACCTACTTCAGGGAAAAGCCGTCCTTTGCGGCTCCCACGGCTT
CTTCGGCTCCCACGGCTCCTCCTGTTCTGGCGTCTCTTCCGGCTAGGAAG
CAAGCCTATTCGAACACAGATAAGCAACTGGCTAGGGCGCGGATCAAACG
CGTCCTTGAGAAGGGAGACCGCAACTTCATTGTGGCTAACTTCAGCAACC
TCTCCGAACAAAGCTGCGGCGAGTACCCGGAGCATCTCACCGCCCAGGTG
CAGAAGCACTCACTGGCGCTGCTGCAGGTCCTCACTTTTGATAACGCCGG
TCTCACCCTGGAACAAGTGATCACCACCGCTCGTCGCGTTTCGTCGGAAA
CCGAGGTGCTCATCGTTAACCTGCTGAAAGCGCTGCGTGAGGCCCACCGC
AACGCTCGTCGTCCGTGCTCCTGGCACGCTGATGTCCAGGTCCCTTGGGC
GGATGAGAGGGCCACTTCTTCGGCGATGCCGCCGCCGCAGGCTGGCGGTG
TCACGAGTGTTGGAGGAGGGTCGTCTAGCGACGGCTCTCGGGACAACCCG
CGTCGCCCTGAGGACCGCTTCCGGCCGTCGTCTTCGTCATCTGCGGATGG
AGCGAGCGACTCTTCTTCCGGTCCTTCTGGCGGCAAGCACGTCCGTTCTC
GGGCTCGTCAGGGCACCAAGGCTTCAGGCGGTGCGCCGGCTAGTTCTGGC
TCTGACACTAGCCCTCGGCGCAAGTCTGTCAAACCTACTTCAGGGAAAAG
GTTGACAAGTCACTAGGTTGACAAGTCACTAG
back to top