mRNA_S-firma_F_contig10103.196.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10103.196.1 vs. uniprot
Match: A0A6H5KNI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE) HSP 1 Score: 116 bits (290), Expect = 4.430e-26 Identity = 62/106 (58.49%), Postives = 76/106 (71.70%), Query Frame = 1
Query: 112 GISRCLDACIVALNQACDKGEKSWYTSTLELQLASLELCKACRSVSTLLVHVDPTTPRNLW-ASKAPESTALESPSSVVSSRVPLVRALGLTWSVPADLVRQVSAT 426
G S+CLDA +VALNQACD EK WY STLELQL SLE+C ACR V TL V V P TP +LW S+ +T SP +SSRVP+V+A GLTW++P +++Q SAT
Sbjct: 5 GNSKCLDAFVVALNQACDGQEKRWYVSTLELQLVSLEVCGACRRVQTLHVRVKPQTPPSLWFPSQNHTTTNNRSPKVCISSRVPVVQAFGLTWALPMGVLQQRSAT 110
BLAST of mRNA_S-firma_F_contig10103.196.1 vs. uniprot
Match: A0A6H5LIJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIJ3_9PHAE) HSP 1 Score: 109 bits (273), Expect = 7.310e-24 Identity = 61/137 (44.53%), Postives = 87/137 (63.50%), Query Frame = 1
Query: 118 SRCLDACIVALNQACDKGEKSWYTSTLELQLASLELCKACRSVSTLLVHVDPTTPRNLWASKAPESTA-LESPSSVVSSRVPLVRALGLTWSVPADLVRQVSATAKF-------LSFKDCFNEPIIGLTWPDSLLKL 504
+RCLDA ++AL+QAC+ GEK WY STLELQL SL+LC+ACR+ S L VHVD TPR+LW+S+ ++ S + +SSRVP+VRAL LTW++ + + + +A + L C + + WP L +L
Sbjct: 9 TRCLDAFVIALSQACEGGEKRWYASTLELQLTSLDLCRACRTTSILHVHVDDQTPRSLWSSRTAQTRPNTRSWNLHISSRVPVVRALRLTWALSMEALLRKAAIELWTWSERLELLGSSCVSSLGSEVVWPRGLTQL 145
BLAST of mRNA_S-firma_F_contig10103.196.1 vs. uniprot
Match: D7G7F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F9_ECTSI) HSP 1 Score: 94.0 bits (232), Expect = 1.850e-20 Identity = 52/105 (49.52%), Postives = 68/105 (64.76%), Query Frame = 1
Query: 112 GISRCLDACIVALNQACDKGEKSWYTSTLELQLASLELCKACRSVSTLLVHVDPTTPRNLWASKAPESTALESPSSV-VSSRVPLVRALGLTWSVPADLVRQVSA 423
G +R DA +AL+QAC+ GEK WYTST ELQL SL++C+ACRS TL V V TP +LW+ ++ S V V SRVP+VRAL LTW+ + + Q +A
Sbjct: 5 GYTRSFDAFAIALSQACEGGEKRWYTSTTELQLGSLDICRACRSTPTLHVRVTGGTPTSLWSPPTVQALPNTQSSKVRVVSRVPVVRALRLTWAFSMETLVQRAA 109
BLAST of mRNA_S-firma_F_contig10103.196.1 vs. uniprot
Match: A0A6H5L1V9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V9_9PHAE) HSP 1 Score: 97.1 bits (240), Expect = 1.080e-19 Identity = 51/94 (54.26%), Postives = 64/94 (68.09%), Query Frame = 1
Query: 121 RCLDACIVALNQACDKGEKSWYTSTLELQLASLELCKACRSVSTLLVHVDPTTPRNLWASKAPESTALESPSSVVSSRVPLVRALGLTWSVPAD 402
RCLDA +VAL+Q + GEK WYTSTL+LQLASLE C ACRS L V+VD TP LW S +P++ S+RVP V+A+GLTW+ P +
Sbjct: 8 RCLDAFVVALSQCYEGGEKRWYTSTLQLQLASLEFCGACRSTPMLHVYVDAETPPTLW------SLGQANPTAGTSTRVPAVQAVGLTWARPTE 95
BLAST of mRNA_S-firma_F_contig10103.196.1 vs. uniprot
Match: D7FT95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT95_ECTSI) HSP 1 Score: 87.4 bits (215), Expect = 6.630e-17 Identity = 59/139 (42.45%), Postives = 80/139 (57.55%), Query Frame = 1
Query: 103 SNAGISRCLDACIVALNQACDKGEKSWYTSTLELQLASLELCKACRSVSTLLVHVDPTTPRNLWASKAPESTALESPSSVVSSRVPLVRALGLTWSVPADLVRQVSATA----KFLSFKDCFNEPII-GLTWPDSLLKL 504
+ AG SRCLDA I+ALNQA GE WYTST++LQLASLELC +CRS+ L ++V TP LW A + S +RVP+VRA +TW +P +R ++ A S F++ + G+ WP+ L L
Sbjct: 5 ARAGPSRCLDALIIALNQASG-GE--WYTSTMQLQLASLELCASCRSMHLLKLNVQHGTPTRLWRGTA-TTRETRSVKRRNVTRVPVVRARTVTWKLPGLALRNMTGDAWSEVTTFSLGPGFDDDLPRGIQWPEKLTLL 139
BLAST of mRNA_S-firma_F_contig10103.196.1 vs. uniprot
Match: A0A6H5JA08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA08_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 1.510e-16 Identity = 61/143 (42.66%), Postives = 82/143 (57.34%), Query Frame = 1
Query: 88 RSGMNSNA--GISRCLDACIVALNQACDKGEKSWYTSTLELQLASLELCKACRSVSTLLVHVDPTTPRNLWASKAPESTALESPSSVVSSRVPLVRALGLTWSVPADLVRQVSATA----KFLSFKDCFNEPII-GLTWPDSL 495
RSG ++N G SRCLDA I+ALNQA GE WYTST++LQL SLELC ACRS+ L ++V TP LW A + S +RVP+VRA +TW +P +R ++ A S F++ + G+ WP+ L
Sbjct: 29 RSGRHTNVETGPSRCLDALIIALNQASG-GE--WYTSTMQLQLTSLELCAACRSMHLLKLNVQHGTPPRLWRGTA-TTRETRSVKRRNVTRVPVVRARTVTWKLPGVALRNMTGDAWSEVTTFSLGPGFDDDLPRGIQWPEKL 167
BLAST of mRNA_S-firma_F_contig10103.196.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 2.640e-16 Identity = 56/129 (43.41%), Postives = 77/129 (59.69%), Query Frame = 1
Query: 124 CLDACIVALNQACDKGEKSWYTSTLELQLASLELCKACRSVSTLLVHVDPTTPRNLWASK-APESTALESPSSVVSSRVPLVRALGLTWSVP--ADLVRQVSATA--KFLSFKDCFNEPIIGLTWPDSL 495
CL+A IVALN+ CD KSWYTST ELQLASL+ C ACR+ T+ ++VD PR L AS AP P + +RVP +R+ +TW++P A L + A ++L F D F + + + WP+ L
Sbjct: 51 CLEALIVALNETCDG--KSWYTSTKELQLASLDFCIACRNCQTVHLNVDEQIPRRLLASADAPPPH----PKRLCWTRVPRLRSRRVTWNMPTAAKLRTPIFAMTDMEYLEFGDAFGDSLEAVPWPEHL 173
BLAST of mRNA_S-firma_F_contig10103.196.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 3.760e-16 Identity = 57/130 (43.85%), Postives = 69/130 (53.08%), Query Frame = 1
Query: 118 SRCLDACIVALNQACDKGEKSWYTSTLELQLASLELCKACRSVSTLLVHVDPTTPRNLWASKAPESTALESPSSVVSSRVPLVRALGLTWSVPADLVRQVSATAK----FLSFKDCFNEPIIGLTWPDSL 495
S CL VALN+ CD KSWYTST ELQLASLELC ACR TL + VD TPR L A+ S P + +RVP +RA TW+VP + S A +L F F+ + + WP L
Sbjct: 134 SSCLKTLTVALNETCDG--KSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLAAADAPSPH---PKRLCGTRVPRLRARRATWNVPTASGMRTSIFATMDVDYLEFGQAFHGSLDAIVWPRRL 258
BLAST of mRNA_S-firma_F_contig10103.196.1 vs. uniprot
Match: A0A6H5JR57_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR57_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 3.900e-16 Identity = 53/107 (49.53%), Postives = 64/107 (59.81%), Query Frame = 1
Query: 112 GISRCLDACIVALNQACDK----GEK-SWYTSTLELQLASLELCKACRSVSTLLVHVDPTTPRNLWASKAPESTALESPSSVVSSRVPLVRALGLTWSVPADLVRQV 417
G SR LDA VALNQA D G+ W+TSTL LQLAS++LC+ACRSV TLLV +D TPR+LW T S S RVP +RA G+ W + A + V
Sbjct: 13 GYSRFLDALTVALNQAYDSRAGDGDNIRWFTSTLNLQLASVDLCRACRSVPTLLVKIDHDTPRSLWT-----PTVYAGAYSAPSGRVPPLRAHGVRWEIEATFAKHV 114
BLAST of mRNA_S-firma_F_contig10103.196.1 vs. uniprot
Match: A0A6H5JFC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC0_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 9.050e-16 Identity = 54/141 (38.30%), Postives = 76/141 (53.90%), Query Frame = 1
Query: 103 SNAGISRCLDACIVALNQACDKGEKSWYTSTLELQLASLELCKACRSVSTLLVHVDPTTPRNLWASKAPESTALE----SPSSVVSSRVPLVRALGLTWSVPADLVRQVS---ATAKFLSFKDCFNEPIIGLTWPDSLLKL 504
S AG SRCLDA VALNQACD G WY ST +LQL+SL C ACRSV T+ + VD +TP L++ + + S V+++RVP +RA +TW + + R ++ + D N+ + W D + L
Sbjct: 23 SIAGPSRCLDAFKVALNQACDGG--GWYVSTEQLQLSSLPFCVACRSVPTMHLKVDRSTPARLFSGDDDAAAVRDKGHGSSKRVMAARVPALRARKVTWQLSGETPRCTGVGLSSVELFVLGDAVNDSMDEAVWSDGMRSL 161 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10103.196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10103.196.1 >prot_S-firma_F_contig10103.196.1 ID=prot_S-firma_F_contig10103.196.1|Name=mRNA_S-firma_F_contig10103.196.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=237bp NAFLSPPPALVKVSTPTYVNPLKLAVSLQRSGMNSNAGISRCLDACIVALback to top mRNA from alignment at S-firma_F_contig10103:3224..5393+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10103.196.1 ID=mRNA_S-firma_F_contig10103.196.1|Name=mRNA_S-firma_F_contig10103.196.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2170bp|location=Sequence derived from alignment at S-firma_F_contig10103:3224..5393+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10103:3224..5393+ >mRNA_S-firma_F_contig10103.196.1 ID=mRNA_S-firma_F_contig10103.196.1|Name=mRNA_S-firma_F_contig10103.196.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1422bp|location=Sequence derived from alignment at S-firma_F_contig10103:3224..5393+ (Sphaerotrichia firma ET2_F female)back to top |