mRNA_S-firma_F_contig10102.194.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10102.194.1 vs. uniprot
Match: D7FVU1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVU1_ECTSI) HSP 1 Score: 205 bits (522), Expect = 7.830e-62 Identity = 113/152 (74.34%), Postives = 134/152 (88.16%), Query Frame = 2
Query: 71 TTTEGMSKSALLKCAGIVAGGLCVAFPAKFLLTVSRLERPTYRVSKTIRVGRVTAEVREYEPYLIAESVVSGGSMKEGTTKGFMNVASYIFGDNAGSRATETGEAEPQTVAMTAPVRTEQPKKXXXXXXXXXXXXVRSNFRNMRVSFVMPRK 526
++ + +SK+ LLK AG++ G +CVA PAKFL++VSRLERPTY VSKT+RVGR+ AEVR+YEPYLIAESVVSG +M+EGTTKGFMNVA YIFGDNAG R +E GE EP VAMTAPVRTEQP+K XXXXXXXXXXX++SNFRNM+VSFVMP+K
Sbjct: 4 SSLKEVSKATLLKWAGVLTGAICVALPAKFLVSVSRLERPTYTVSKTVRVGRLAAEVRDYEPYLIAESVVSGETMREGTTKGFMNVAGYIFGDNAGGRVSEDGEVEPAQVAMTAPVRTEQPQKAXXXXXXXXXXXLKSNFRNMKVSFVMPKK 155
BLAST of mRNA_S-firma_F_contig10102.194.1 vs. uniprot
Match: A0A7S3UFV7_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UFV7_9CHLO) HSP 1 Score: 68.9 bits (167), Expect = 3.820e-10 Identity = 47/142 (33.10%), Postives = 65/142 (45.77%), Query Frame = 2
Query: 119 IVAGGLCVAFPAKFLLTVSRLERPTYRVSKTIRVGRVTAEVREYEPYLIAE-SVVSGGSMKEGTTKGFMNVASYIFGDNAGSRATETGEAEPQTVAMTAPVRTEQPKKXXXXXXXXXXXXVRSNFRNMRVSFVMPRKVKRTD 541
+VA + A+PA V +LE+P YRV KT+ + E+R YEPY++AE G M + GF +A YIF A + E Q +AMT+PVR E +VSFVMP K + +
Sbjct: 7 VVAAAILAAWPALVAYEVKKLEKPKYRVVKTLLGKKNKVEIRTYEPYVVAEYEAKEGTDMDNALSGGFRAIAGYIF-------ARDQPETTKQKIAMTSPVRLEM-----------------EGGEKHKVSFVMPSKYNKDN 124
BLAST of mRNA_S-firma_F_contig10102.194.1 vs. uniprot
Match: A0A2V0P5D1_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P5D1_9CHLO) HSP 1 Score: 68.2 bits (165), Expect = 1.230e-9 Identity = 45/119 (37.82%), Postives = 61/119 (51.26%), Query Frame = 2
Query: 104 LKCAGIVAGGLCVAFPAKFLLTVSRLERPTYRVSKTIRVGRVT-----------AEVREYEPYLIAESVVSGGSMKEGTTKGFMNVASYIFGDNAGSRATETGEAEPQTVAMTAPVRTE 427
L AG VAGG + +P + + E+P Y V + + G AEVR YEP L+AE V G +M+E +++GF +A +IFG N T G Q VAMT+PVR E
Sbjct: 11 LVVAGSVAGGAALLWPLVIAYEIRKCEKPKYAVLRALAAGPGDRRRFRLGFGQYAEVRRYEPMLVAEVEVEG-NMRETSSQGFRKIARFIFGAN-----TAAGGGGSQAVAMTSPVREE 123
BLAST of mRNA_S-firma_F_contig10102.194.1 vs. uniprot
Match: A0A7S2KEE6_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KEE6_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 2.590e-9 Identity = 45/125 (36.00%), Postives = 67/125 (53.60%), Query Frame = 2
Query: 65 HRTTTEGMSKSALLKCAGIVAGGLCVAFPAKFLLTV------SRLERPTYRVSKTIRVGRVTAEVREYEPYLIAESVVSGGSMKEGTTKGFMNVASYIFGDNAGSRATETGEAEPQTVAMTAPVR 421
H T ++ ALL + I+ G + + A++ + +LE+P Y V + + G E+R+YEPY+IAE+ V G +E T+ GF A YIFG N R G A+ + +AMTAPVR
Sbjct: 13 HHLTNPMIAFPALL--SKILVGAVAILGTARYSFGLYGWRIAEKLEKPVYTVIQKLPGG---VELRQYEPYMIAETTVDGVGFREPTSSGFRACAGYIFGKNKPRR----GMADGEKMAMTAPVR 128
BLAST of mRNA_S-firma_F_contig10102.194.1 vs. uniprot
Match: A0A7Y3BPF4_9DELT (Heme-binding protein n=2 Tax=Deltaproteobacteria TaxID=28221 RepID=A0A7Y3BPF4_9DELT) HSP 1 Score: 63.2 bits (152), Expect = 4.460e-8 Identity = 49/118 (41.53%), Postives = 61/118 (51.69%), Query Frame = 2
Query: 68 RTTTEGMSKSALLKCAG-IVAGGLCVAFPAKFLLTVSRLERPTYRVSKTIRVGRVTAEVREYEPYLIAESVVSGGSMKEGTTKGFMNVASYIFGDNAGSRATETGEAEPQTVAMTAPV 418
R G+ LL G IV GG VA+ E PTY VS+T+ G V E+REY PYL+AE+VV GG+ +GF +A YIFG N G+R +AMTAPV
Sbjct: 2 RWAGAGLGLILLLAALGAIVLGGGTVAY-----------ESPTYSVSQTL--GNV--EIREYRPYLVAETVV-GGTPDTAGNEGFRILAKYIFGSNRGTRK----------IAMTAPV 93
BLAST of mRNA_S-firma_F_contig10102.194.1 vs. uniprot
Match: A0A0S8F3J4_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium SG8_38_1 TaxID=1703408 RepID=A0A0S8F3J4_9DELT) HSP 1 Score: 60.5 bits (145), Expect = 3.490e-7 Identity = 39/83 (46.99%), Postives = 49/83 (59.04%), Query Frame = 2
Query: 182 ERPTYRVSKTIRVGRVTAEVREYEPYLIAESVVSGGSMKEGTTKGFMNVASYIFGDNAGSRATETGEAEPQTVAMTAPVRTEQ 430
E P YRV T R+G V E+REYEPYL+AE+ V G ++ +GF +A YIFGDN GS Q + MTAPV E+
Sbjct: 23 ESPGYRV--TNRLGPV--EIREYEPYLVAETTVDG-RLETAGNRGFRILAKYIFGDNRGS----------QKITMTAPVAQEK 90
BLAST of mRNA_S-firma_F_contig10102.194.1 vs. uniprot
Match: A0A2E5J0E8_9BACT (Heme-binding protein n=1 Tax=Candidatus Magasanikbacteria bacterium TaxID=2026717 RepID=A0A2E5J0E8_9BACT) HSP 1 Score: 60.5 bits (145), Expect = 5.710e-7 Identity = 56/145 (38.62%), Postives = 81/145 (55.86%), Query Frame = 2
Query: 92 KSALLKCAGIVAGGLCVAFPAKFLLTVSRLERPTYRVSKTIRVGRVTAEVREYEPYLIAESVVSGGSMKE-GTTKGFMNVASYIFGDNAGSRATETGEAEPQTVAMTAPVRTEQPKKXXXXXXXXXXXXVRSNFRNMRVSFVMPR 523
KSA+ + G + +AF +L+V +E P+Y V + E+R+Y+ Y+IA++ + G S + T +GF +A YIFG+N + Q+VAMTAPV T++ XXXXXXXXX N R+ VSFVMPR
Sbjct: 38 KSAMYSVISVF-GIIVLAFFLYSVLSVRNIEEPSYIVIDK----KNGYEIRKYDSYIIAQTRIIGASTRSTATNQGFSIIADYIFGNNT----------KRQSVAMTAPVNTQEVGYEKXXXXXXXXXERGENTRSYTVSFVMPR 167
BLAST of mRNA_S-firma_F_contig10102.194.1 vs. uniprot
Match: A0A6L7VQS5_9GAMM (Heme-binding protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L7VQS5_9GAMM) HSP 1 Score: 58.2 bits (139), Expect = 2.820e-6 Identity = 34/87 (39.08%), Postives = 50/87 (57.47%), Query Frame = 2
Query: 179 LERPTYRVSKTIRVGRVTA-EVREYEPYLIAESVVSGGSMKEGTTKGFMNVASYIFGDNAGSRATETGEAEPQTVAMTAPVRTEQPK 436
LE P+Y V + + T+ E+R YEPYL+AE++V+G G GF +A YIFG+N AT++ + MTAPV +P+
Sbjct: 43 LEEPSYEV-----IDQTTSYEIRIYEPYLVAETIVTGDFDDTGNV-GFRRLAGYIFGENTSRDATDSNRKSAVKMNMTAPVTRHRPQ 123
BLAST of mRNA_S-firma_F_contig10102.194.1 vs. uniprot
Match: A0A7Y2BJC4_9DELT (Heme-binding protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Y2BJC4_9DELT) HSP 1 Score: 57.4 bits (137), Expect = 4.410e-6 Identity = 38/79 (48.10%), Postives = 47/79 (59.49%), Query Frame = 2
Query: 182 ERPTYRVSKTIRVGRVTAEVREYEPYLIAESVVSGGSMKEGTTKGFMNVASYIFGDNAGSRATETGEAEPQTVAMTAPV 418
+ P Y V +T VG V E+REYEPYL+AE++V GG G +GF +A YIFGDN S Q +AMTAPV
Sbjct: 30 DSPAYSVIET--VGDV--EIREYEPYLVAETLVGGGHEGAGN-QGFRILAKYIFGDNRVS----------QKIAMTAPV 93
BLAST of mRNA_S-firma_F_contig10102.194.1 vs. uniprot
Match: A0A7S3WYX2_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3WYX2_9SPIT) HSP 1 Score: 55.5 bits (132), Expect = 9.790e-6 Identity = 35/84 (41.67%), Postives = 47/84 (55.95%), Query Frame = 2
Query: 179 LERPTYRVSKTIRVGRVTAEVREYEPYLIAESVV--SGGSMKEGTTKGFMNVASYIFGDNAGSRATETGEAEPQTVAMTAPVRT 424
LERP + V + I G E+R+YEP+LIAE+ V +G S +++GF VA YIFG N G+ + MTAPV T
Sbjct: 47 LERPAFHVVRKIGRG---VEIRQYEPFLIAETAVPQAGASAVRASSQGFRTVAKYIFGGNRGA----------VKMKMTAPVTT 117 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10102.194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10102.194.1 >prot_S-firma_F_contig10102.194.1 ID=prot_S-firma_F_contig10102.194.1|Name=mRNA_S-firma_F_contig10102.194.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=158bp MSKSALLKCAGIVAGGLCVAFPAKFLLTVSRLERPTYRVSKTIRVGRVTAback to top mRNA from alignment at S-firma_F_contig10102:2..1816- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10102.194.1 ID=mRNA_S-firma_F_contig10102.194.1|Name=mRNA_S-firma_F_contig10102.194.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1815bp|location=Sequence derived from alignment at S-firma_F_contig10102:2..1816- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10102:2..1816- >mRNA_S-firma_F_contig10102.194.1 ID=mRNA_S-firma_F_contig10102.194.1|Name=mRNA_S-firma_F_contig10102.194.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=948bp|location=Sequence derived from alignment at S-firma_F_contig10102:2..1816- (Sphaerotrichia firma ET2_F female)back to top |