mRNA_S-firma_F_contig10100.193.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10100.193.1
Unique NamemRNA_S-firma_F_contig10100.193.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10100.193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10100contigS-firma_F_contig10100:541..1252 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size712
Cds size711
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.7059162-CDS-S-firma_F_contig10100:540..12511622815537.7059162-CDS-S-firma_F_contig10100:540..1251Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10100 541..1251 +
1696949399.338179-CDS-S-firma_F_contig10100:540..12511696949399.338179-CDS-S-firma_F_contig10100:540..1251Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10100 541..1251 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10100.193.1prot_S-firma_F_contig10100.193.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10100 541..1251 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10100.193.1

>prot_S-firma_F_contig10100.193.1 ID=prot_S-firma_F_contig10100.193.1|Name=mRNA_S-firma_F_contig10100.193.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=237bp
LFGVLSGAFFRLRRGSCRGTRGRGFTHIFTFTHVFTFTHVFTFTHVFIFT
HVFTFTHVLLCLERGSCGITASVFAGAVNVTLPRSNQGDCRVTVSFLVGG
LSCAFVPLKRQSCRVAVPIPFSGGKLSGVFLRSRRGIHRGNGQRLERGSG
RGVYRRGLRNAWLFPLLPLLLYVTPVSVRVPLFHRSRRGTSVFAVAFAFA
FIFTFFFTVTFMMILVSVSMFVFADLITLGTGALLLS
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mRNA from alignment at S-firma_F_contig10100:541..1252+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10100.193.1 ID=mRNA_S-firma_F_contig10100.193.1|Name=mRNA_S-firma_F_contig10100.193.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=712bp|location=Sequence derived from alignment at S-firma_F_contig10100:541..1252+ (Sphaerotrichia firma ET2_F female)
CTCTTTGGCGTCCTCAGCGGCGCCTTCTTTCGGCTCCGGCGGGGGAGCTG
CCGAGGAACCCGAGGCCGAGGTTTCACCCACATCTTCACCTTCACCCACG
TCTTCACCTTCACCCACGTCTTCACCTTCACCCACGTCTTCATCTTCACC
CACGTCTTCACCTTCACCCACGTTCTCCTGTGTCTCGAACGCGGGAGCTG
CGGGATCACCGCCTCCGTCTTCGCTGGCGCCGTGAACGTCACCCTCCCCC
GGTCCAACCAGGGGGACTGTCGAGTCACCGTTTCCTTCTTGGTCGGTGGC
CTGAGTTGCGCCTTCGTCCCGCTCAAGCGGCAGAGCTGTAGAGTCGCCGT
CCCCATCCCCTTCTCCGGCGGCAAGCTCAGCGGCGTCTTCCTCCGCAGTC
GCAGAGGGATCCACCGAGGAAACGGACAGCGTCTCGAGCGGGGGAGCGGC
CGAGGAGTCTACAGGCGGGGGCTCAGAAATGCTTGGCTCTTCCCCCTCCT
CCCCCTCCTCCTCTACGTCACCCCCGTCTCCGTCCGCGTCCCCCTCTTCC
ACCGAAGCCGACGTGGAACCTCCGTCTTCGCCGTCGCCTTCGCCTTCGCC
TTCATCTTCACCTTCTTCTTCACCGTCACCTTCATGATGATCTTGGTCTC
CGTCTCCATGTTCGTCTTCGCCGACCTCATCACCCTCGGCACCGGTGCCC
TCCTCCTCTCCG
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Coding sequence (CDS) from alignment at S-firma_F_contig10100:541..1252+

>mRNA_S-firma_F_contig10100.193.1 ID=mRNA_S-firma_F_contig10100.193.1|Name=mRNA_S-firma_F_contig10100.193.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1422bp|location=Sequence derived from alignment at S-firma_F_contig10100:541..1252+ (Sphaerotrichia firma ET2_F female)
CTCTTTGGCGTCCTCAGCGGCGCCTTCTTTCGGCTCCGGCGGGGGAGCTG
CCGAGGAACCCGAGGCCGAGGTTTCACCCACATCTTCACCTTCACCCACG
TCTTCACCTTCACCCACGTCTTCACCTTCACCCACGTCTTCATCTTCACC
CACGTCTTCACCTTCACCCACGTTCTCCTGTGTCTCGAACGCGGGAGCTG
CGGGATCACCGCCTCCGTCTTCGCTGGCGCCGTGAACGTCACCCTCCCCC
GGTCCAACCAGGGGGACTGTCGAGTCACCGTTTCCTTCTTGGTCGGTGGC
CTGAGTTGCGCCTTCGTCCCGCTCAAGCGGCAGAGCTGTAGAGTCGCCGT
CCCCATCCCCTTCTCCGGCGGCAAGCTCAGCGGCGTCTTCCTCCGCAGTC
GCAGAGGGATCCACCGAGGAAACGGACAGCGTCTCGAGCGGGGGAGCGGC
CGAGGAGTCTACAGGCGGGGGCTCAGAAATGCTTGGCTCTTCCCCCTCCT
CCCCCTCCTCCTCTACGTCACCCCCGTCTCCGTCCGCGTCCCCCTCTTCC
ACCGAAGCCGACGTGGAACCTCCGTCTTCGCCGTCGCCTTCGCCTTCGCC
TTCATCTTCACCTTCTTCTTCACCGTCACCTTCATGATGATCTTGGTCTC
CGTCTCCATGTTCGTCTTCGCCGACCTCATCACCCTCGGCACCGGTGCCC
TCCTCCTCTCCCTCTTTGGCGTCCTCAGCGGCGCCTTCTTTCGGCTCCGG
CGGGGGAGCTGCCGAGGAACCCGAGGCCGAGGTTTCACCCACATCTTCAC
CTTCACCCACGTCTTCACCTTCACCCACGTCTTCACCTTCACCCACGTCT
TCATCTTCACCCACGTCTTCACCTTCACCCACGTTCTCCTGTGTCTCGAA
CGCGGGAGCTGCGGGATCACCGCCTCCGTCTTCGCTGGCGCCGTGAACGT
CACCCTCCCCCGGTCCAACCAGGGGGACTGTCGAGTCACCGTTTCCTTCT
TGGTCGGTGGCCTGAGTTGCGCCTTCGTCCCGCTCAAGCGGCAGAGCTGT
AGAGTCGCCGTCCCCATCCCCTTCTCCGGCGGCAAGCTCAGCGGCGTCTT
CCTCCGCAGTCGCAGAGGGATCCACCGAGGAAACGGACAGCGTCTCGAGC
GGGGGAGCGGCCGAGGAGTCTACAGGCGGGGGCTCAGAAATGCTTGGCTC
TTCCCCCTCCTCCCCCTCCTCCTCTACGTCACCCCCGTCTCCGTCCGCGT
CCCCCTCTTCCACCGAAGCCGACGTGGAACCTCCGTCTTCGCCGTCGCCT
TCGCCTTCGCCTTCATCTTCACCTTCTTCTTCACCGTCACCTTCATGATG
ATCTTGGTCTCCGTCTCCATGTTCGTCTTCGCCGACCTCATCACCCTCGG
CACCGGTGCCCTCCTCCTCTCC
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