mRNA_S-firma_F_contig1010.192.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1010.192.1
Unique NamemRNA_S-firma_F_contig1010.192.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1010.192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1010contigS-firma_F_contig1010:21031..21402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size372
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.209476-CDS-S-firma_F_contig1010:21030..213421622815537.209476-CDS-S-firma_F_contig1010:21030..21342Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1010 21031..21342 +
1696949398.909702-CDS-S-firma_F_contig1010:21030..213421696949398.909702-CDS-S-firma_F_contig1010:21030..21342Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1010 21031..21342 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.2228527-UTR-S-firma_F_contig1010:21342..214021622815537.2228527-UTR-S-firma_F_contig1010:21342..21402Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1010 21343..21402 +
1696949398.9314077-UTR-S-firma_F_contig1010:21342..214021696949398.9314077-UTR-S-firma_F_contig1010:21342..21402Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1010 21343..21402 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1010.192.1prot_S-firma_F_contig1010.192.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1010 21031..21342 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1010.192.1

>prot_S-firma_F_contig1010.192.1 ID=prot_S-firma_F_contig1010.192.1|Name=mRNA_S-firma_F_contig1010.192.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=104bp
RAFFSNLRGRATIRCAGPTTAPILRVKNTAETRSRGVDTFWGFGGNGILV
DRRRIGRPLFVLLFGEAAGDQQCELGGVKAGFCFEFLVICFFVRPGRGGE
GGA*
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mRNA from alignment at S-firma_F_contig1010:21031..21402+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1010.192.1 ID=mRNA_S-firma_F_contig1010.192.1|Name=mRNA_S-firma_F_contig1010.192.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=372bp|location=Sequence derived from alignment at S-firma_F_contig1010:21031..21402+ (Sphaerotrichia firma ET2_F female)
AGAGCGTTTTTTTCGAATTTGCGTGGGAGGGCGACAATTCGGTGTGCGGG
CCCAACTACTGCACCTATTCTCCGCGTGAAAAACACCGCGGAAACAAGGT
CACGGGGGGTAGATACATTCTGGGGTTTCGGCGGGAATGGGATTTTAGTC
GATCGTAGGAGGATCGGCCGTCCGTTGTTTGTTTTGTTGTTTGGTGAGGC
GGCTGGAGACCAGCAGTGCGAGTTGGGTGGAGTGAAGGCTGGCTTTTGTT
TTGAGTTTTTGGTAATTTGTTTTTTCGTTCGACCTGGCCGGGGGGGGGAG
GGGGGGGCGTAGCACAATACGCAACGCTTTTGTTTCGTTGGCTTCACAGT
AAGTTAGGGCTTGCTTCAACAG
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Coding sequence (CDS) from alignment at S-firma_F_contig1010:21031..21402+

>mRNA_S-firma_F_contig1010.192.1 ID=mRNA_S-firma_F_contig1010.192.1|Name=mRNA_S-firma_F_contig1010.192.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=624bp|location=Sequence derived from alignment at S-firma_F_contig1010:21031..21402+ (Sphaerotrichia firma ET2_F female)
AGAGCGTTTTTTTCGAATTTGCGTGGGAGGGCGACAATTCGGTGTGCGGG
CCCAACTACTGCACCTATTCTCCGCGTGAAAAACACCGCGGAAACAAGGT
CACGGGGGGTAGATACATTCTGGGGTTTCGGCGGGAATGGGATTTTAGTC
GATCGTAGGAGGATCGGCCGTCCGTTGTTTGTTTTGTTGTTTGGTGAGGC
GGCTGGAGACCAGCAGTGCGAGTTGGGTGGAGTGAAGGCTGGCTTTTGTT
TTGAGTTTTTGGTAATTTGTTTTTTCGTTCGACCTGGCCGGGGGGGGGAG
GGGGGGGCGTAGAGAGCGTTTTTTTCGAATTTGCGTGGGAGGGCGACAAT
TCGGTGTGCGGGCCCAACTACTGCACCTATTCTCCGCGTGAAAAACACCG
CGGAAACAAGGTCACGGGGGGTAGATACATTCTGGGGTTTCGGCGGGAAT
GGGATTTTAGTCGATCGTAGGAGGATCGGCCGTCCGTTGTTTGTTTTGTT
GTTTGGTGAGGCGGCTGGAGACCAGCAGTGCGAGTTGGGTGGAGTGAAGG
CTGGCTTTTGTTTTGAGTTTTTGGTAATTTGTTTTTTCGTTCGACCTGGC
CGGGGGGGGGAGGGGGGGGCGTAG
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