mRNA_S-firma_F_contig1010.191.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig1010.191.1 vs. uniprot
Match: D8LDF3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDF3_ECTSI) HSP 1 Score: 453 bits (1165), Expect = 1.030e-155 Identity = 211/240 (87.92%), Postives = 231/240 (96.25%), Query Frame = 1
Query: 301 YEGQNKRALIWAAVYFLGWIMQRLWCHLGLPDHCDLAMKPLDVLSDLVVLFTFSLAQAYWCEILLESRFEELKKAPWIFVVILATPVLISALGLIDGLERWDRNNRGEDFEFSAIRSTIFIFGLIAAVLLVAWHFARAWLTLPGMQLLSGGVKVDKPEEDLHGIYASSRIVVIAWCILFTSFIISEDDGFDYRGALLAWVLSLIAVFPHPVSYLWLGVNTGIFIQGIGANRLRFLGCEGW 1020
YEGQNKRALIWAA+YFL WI+QRLWCHLGLPDHCDLAM+PLDVL+DLVVLFTFSLAQAYWCEILL+ RFEELKKAPWIF VIL TP++ISALG I GLERWD++N G+DFEFSA+RSTIF+FGLIAAVLLVAWHFARAWLTLPGMQLLSGGVKV+ P+EDLHGIY+SSRIV+IAWCILFTSFIISEDDGFDYRGALLAW+LSLIAVFPHPVSY+WLGVNTGIF+QGIGANRLRFLGC+ W
Sbjct: 4 YEGQNKRALIWAALYFLAWILQRLWCHLGLPDHCDLAMRPLDVLTDLVVLFTFSLAQAYWCEILLDDRFEELKKAPWIFGVILITPIIISALGRIGGLERWDKDNEGKDFEFSALRSTIFVFGLIAAVLLVAWHFARAWLTLPGMQLLSGGVKVEPPKEDLHGIYSSSRIVIIAWCILFTSFIISEDDGFDYRGALLAWMLSLIAVFPHPVSYIWLGVNTGIFLQGIGANRLRFLGCKEW 243
BLAST of mRNA_S-firma_F_contig1010.191.1 vs. uniprot
Match: D7G1P1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1P1_ECTSI) HSP 1 Score: 185 bits (470), Expect = 1.380e-50 Identity = 101/242 (41.74%), Postives = 140/242 (57.85%), Query Frame = 1
Query: 292 GHPYEGQNKRALIWAAVYFLGWIMQRLWCHLGLPDHCDLAMKPLDVLSDLVVLFTFSLAQAYWCEILLESRFEELKKAPWIFVVILATPVLISALGLIDGLERWDRNNRGEDFEFSAIRSTIFIFGLIAAVLLVAWHFARAWLTLPGMQLLSGGVKVDKP-EEDLHGIYASSRIVVIAWCILFTSFIISEDDGFDYRGALLAWVLSLIAVFPHPVSYLWLGVNTGIFIQGIGANRLRFLGCE 1014
G Y Q KRA W + L W+ QRL CH LP HCDL L+VL+DL+ L F L QA++CE+L E RF L + + +VI+ +++SA+ D + R N D+ S I + + + + VA+HFA AW TLPG +SG + +D EE+LH IY SR +++++ +L+ +F E DG LLAWVLSL A F S +WL + TG+FIQG G+ RLRFL CE
Sbjct: 29 GDAYIEQAKRAAAWIGLLLLCWLFQRLMCHFNLPPHCDLPSDALEVLTDLLALLVFGLTQAWFCEVLEERRFRHLTREAYFGIVIIVIGLIVSAIETTDWFQDM-RFNDNSDWRDSHIVMAVVLITFVLVI--VAYHFAEAWRTLPGAYYVSGNINLDIVIEENLHRIYNVSRGLIVSYALLYGAFAFEEGDGLKQHYVLLAWVLSLTAQFKSKPSIIWLALCTGVFIQGFGSYRLRFL-CE 266
BLAST of mRNA_S-firma_F_contig1010.191.1 vs. uniprot
Match: D8LDF2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDF2_ECTSI) HSP 1 Score: 181 bits (460), Expect = 1.200e-49 Identity = 102/248 (41.13%), Postives = 150/248 (60.48%), Query Frame = 1
Query: 271 KKQSIVMGHP--------YEGQNKRALIWAAVYFLGWIMQRLWCHLGLPDHCDLAMKPLDVLSDLVVLFTFSLAQAYWCEILLESRFEELKKAPWIFVVILATPVLISALGLIDGLERWDRNNRGEDF-EFSAIRSTIFIFGLIAAVLLVAWHFARAWLTLPGMQLLSG-GVKVDKPEEDLHGIYASSRIVVIAWCILFTSFIISEDDGFDYRGALLAWVLSLIAVFPHPVSYLWLGVNTGIFIQGIG 984
K + + HP Y Q RA WA +Y LGW++ RL C+ GLP C+L +PL+VL+ L+VL FSLAQA++CEI+ E RF +L + ++++ + +S L + L RN+ E+ + + + IFI LI V+++ HFA AW LPG L+SG GV + EDL IY +SR++++A+ IL+ +F ++ DDG+ Y+ LLAWVLSL A F +S WL V TG+F+QGIG
Sbjct: 17 KDGGVALTHPVNPMRRGAYVEQATRATGWAVMYILGWLLMRLSCYAGLPGDCNLPDEPLEVLTVLLVLLVFSLAQAWFCEIMEERRFRDLASKVYFPLLMVGAALALSGLSRAESL----RNSLQEERRDLTTFQVAIFIILLILTVVVLLLHFAEAWKVLPGAHLISGVGVPRVEVREDLLSIYVASRMLILAYFILYAAFSVARDDGWGYQLYLLAWVLSLFAQFKSFISVFWLAVTTGVFLQGIG 260
BLAST of mRNA_S-firma_F_contig1010.191.1 vs. uniprot
Match: A0A6H5JIF9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIF9_9PHAE) HSP 1 Score: 139 bits (350), Expect = 3.710e-34 Identity = 85/243 (34.98%), Postives = 130/243 (53.50%), Query Frame = 1
Query: 310 QNKRALIWAAVYFLGWIMQRLWCHLGLPDHCDLAMKPLDVLSDLVVLFTFSLAQA---YWCEILLESRFEELKKAPWIFVVILATPVLISALGLIDGLERWDRNNRGEDFEFSAIRSTIFIFGLIAAVLLVAWHFARAWLTLPGMQLLSGGVKVDKPEEDLHGI--------YASSRIVVIAWCILFTSFIISEDDGFDYRGALLAWVLSLIAVFPHPVSYLWLGVNTGIFIQGIGANRLRFL 1005
+ +A +W + Y L W++ ++ C L P + A +PLDVL++L L F+L QA + C+ L RF L K ++ VV++ + + SAL DG G + + ST+ + IA L +HF AW TLPG ++SGGV PE+ + Y ++ ++V A+ L +F+ D ++Y LLAWV+SLIA+F P S +WLGV TG F+QG+GA +FL
Sbjct: 9 RGAKAAVWFSFYVLCWLLMQVSCELEPPGNYRWACQPLDVLTELPFLLAFALGQATTAFLCDTLDSERFHSLSKERYLPVVVVGSGITTSALTKNDGFVDTHEIEDGMTTAVNVV-STLLV---IAVGLAFVYHFFVAWTTLPGAVMISGGVST--PEDATAPVRSGNRFARYMATAVLVAAFVALNAAFVHRRGDNWNYHYTLLAWVMSLIAIFDDPFSVVWLGVTTGAFLQGVGAYSFQFL 245
BLAST of mRNA_S-firma_F_contig1010.191.1 vs. uniprot
Match: A0A6H5JMR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMR1_9PHAE) HSP 1 Score: 130 bits (327), Expect = 1.340e-30 Identity = 83/239 (34.73%), Postives = 128/239 (53.56%), Query Frame = 1
Query: 310 QNKRALIWAAVYFLGWIMQRLWCHLGLPDHCDLAMKPLDVLSDLVVLFTFSLAQAYWCEILLESRFEELKKAPWIFVVILATPVLISALGLIDGLERWDRNNRGEDFEFSAIRSTIFIFGLIAAVLLVAWHFARAWLTLPGMQL----LSGGVKVDKPE---EDLHGIYASSRIVVIAWCILFTSFIISEDDGFDYRGALLAWVLSLIAVFPHPVSYLWLGVNTGIFIQGIGANRLRFL 1005
Q +A W Y + + C +G+P++C A +DVL++L LF F+ A+ C IL +R+ L K + V+++A+ + SAL DG E ++ G D S + + I LI L+ A+H+ AW LPG L +SG V P E+ + Y +S V++ + +LF++F S D +DY LLAW++SLIA F +S WLG+ TG+F+QG+GA R L
Sbjct: 43 QGVKAASWVGFYIFLYALMAASCEVGVPENCTRATDAMDVLTELPFLFVFA---AFMCGILNGTRYHALSKKMYFPVLVIASGLATSALMNNDGFE--GLHDPGGDL--SPAEAALSIILLILVALVFAYHYFLAWKFLPGGWLGWGMVSGQVAEPPPPSRAENRYLQYMASITVIMLYIVLFSAFAYSRGDEWDYHYVLLAWLMSLIAAFDDYISVAWLGITTGVFLQGVGAYSFRVL 274
BLAST of mRNA_S-firma_F_contig1010.191.1 vs. uniprot
Match: D7G1N8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1N8_ECTSI) HSP 1 Score: 91.7 bits (226), Expect = 3.860e-18 Identity = 50/132 (37.88%), Postives = 74/132 (56.06%), Query Frame = 1
Query: 631 EFSAIRSTIFIFGLIAAVLLVAWHFARAWLTLPGMQL----LSGGVKVDKPE---EDLHGIYASSRIVVIAWCILFTSFIISEDDGFDYRGALLAWVLSLIAVFPHPVSYLWLGVNTGIFIQGIGANRLRFL 1005
E S + + I L+ L+ A+H+ AW LPG L +SG V P E+ + Y +S V++ + +LF++F S D +DY LLAW++SLIA F +S WLG+ TG+F+QG+GA R L
Sbjct: 15 ELSPAEAALSIILLVLVALVFAYHYFLAWKFLPGGWLGWGMVSGQVAEPPPPSRAENRYLQYMASITVIMVYIVLFSAFAYSRGDEWDYHYVLLAWLMSLIAAFDDYISVAWLGITTGVFLQGVGAYSFRVL 146
BLAST of mRNA_S-firma_F_contig1010.191.1 vs. uniprot
Match: C5L8A4_PERM5 (Uncharacterized protein n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5L8A4_PERM5) HSP 1 Score: 65.1 bits (157), Expect = 9.310e-8 Identity = 54/198 (27.27%), Postives = 88/198 (44.44%), Query Frame = 1
Query: 436 DLVVLFTFSLAQAYWCEILLE---SRFEELKKAPWIFVVILATPVLISALGLIDGLERWDRNNRGEDFEFSAIRSTIFIFGLIAAVLLVAWHFARAWLTLPGMQLLSGGVKVDKPEEDLHGIYASSRIVVIAWCILFTSFII--------SEDDG---FDYRGALLAWVLSLIAVFPHPVSYLWLGVNTGIFIQGIGA 987
+L L F + QA++ E++ + S++ + W F+ A + + LG++D L + G ++A S + F LL+ WH + LP + +Y SR+ V+ CI +F++ DD F +AW+LSLIA F HP+S L L + +GIF+QGI A
Sbjct: 130 NLANLAMFGIIQAWFVEVIDDPKRSKWIFSLRRWWFFITFFAASTVFTLLGMLDVLSHSSISPSGHLDNWNAF-SIVLTFLASFLALLIIWHVVYSIKVLPTYADAA--------------VYIISRVGVV--CIFGITFLLIHYDDKYNKHDDNPVTFHLHHYFIAWLLSLIAAFDHPISLLMLSITSGIFVQGIAA 310
BLAST of mRNA_S-firma_F_contig1010.191.1 vs. uniprot
Match: A0A7J6NSF0_PEROL (Uncharacterized protein n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6NSF0_PEROL) HSP 1 Score: 63.9 bits (154), Expect = 5.090e-7 Identity = 60/244 (24.59%), Postives = 100/244 (40.98%), Query Frame = 1
Query: 298 PYEGQNKRALIWAAVYFLGWIMQRLWCH-LGLPDHCDLAMKPLDVLSDLVVLFTFSLAQAYWCEILLE-SRFEELKKAP--WIFVVILATPVLISALGLIDGLERWDRNNRGEDFEFSAIRSTIFIFGLIAAVLLVAWHFARAWLTLPGMQLLSGGVKVDKPEEDLHGIYASSRIVVIAWCILFTSFII-------SEDDG---FDYRGALLAWVLSLIAVFPHPVSYLWLGVNTGIFIQGIGA 987
P + L W + G+ R +C +P D L ++L L F + QA++ E++ + R + + P W F+ A + + LG++D L + G ++A ST+ WH W ++ + P +Y SR V+ C +F++ + DD F +AW+LSLIA F HP+S + L + +GIF+QGI A
Sbjct: 418 PSSSSDDGVLRWLLLLVAGYAYNRFFCEKYNIPRDSD-RYTYLGHSTNLANLAMFGIIQAWFVEVIDDPKRSKWIFSFPRWWFFITFFAASTVFTLLGMLDALSHNSISPSGHLDRWNAF-STVLTXXXXXXXXXXXWH---VWYSIKVL-----------PTYPDAAVYILSRFGVV--CTFGVTFLLIHFDDEHNHDDNPVTFHLHHYFIAWLLSLIAAFDHPISLIMLAITSGIFVQGIAA 643 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1010.191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1010.191.1 >prot_S-firma_F_contig1010.191.1 ID=prot_S-firma_F_contig1010.191.1|Name=mRNA_S-firma_F_contig1010.191.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=309bp MPCACDHSCHCDAKPAPPPVKPVEEKPKPPPPKEEKPKPPPPKEEKPKPPback to top mRNA from alignment at S-firma_F_contig1010:15888..21318+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig1010.191.1 ID=mRNA_S-firma_F_contig1010.191.1|Name=mRNA_S-firma_F_contig1010.191.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=5431bp|location=Sequence derived from alignment at S-firma_F_contig1010:15888..21318+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig1010:15888..21318+ >mRNA_S-firma_F_contig1010.191.1 ID=mRNA_S-firma_F_contig1010.191.1|Name=mRNA_S-firma_F_contig1010.191.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1854bp|location=Sequence derived from alignment at S-firma_F_contig1010:15888..21318+ (Sphaerotrichia firma ET2_F female)back to top |