mRNA_S-firma_F_contig1010.189.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1010.189.1
Unique NamemRNA_S-firma_F_contig1010.189.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig1010.189.1 vs. uniprot
Match: D8LDF5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDF5_ECTSI)

HSP 1 Score: 220 bits (561), Expect = 1.610e-65
Identity = 143/264 (54.17%), Postives = 170/264 (64.39%), Query Frame = 3 
Query:   18 LVRVSVCDPAMRRTVTLSLALVLARRADAFFGSGLASPSLQLACRTSSDRPTPLFPAGRDPAGRLLYRASNDDCECSRAEEEQ-KNHAAPIVRLEDPDLDGRATGTTTATSASAAATLVSLAKRAVATLALASFLTSAVSVGEVAFSPPMAGPGVIGAGGGAFVAPAFAELEPLPLKSYSEEFSSALAPVNTVRGIWRTREIRNDGSALPAEGGRLGQRGICGGRLSFKGFVGAGKGTVEYKGCGEREGKGRWLTKPKNIVNGR 806
            L+ VS  +P +   + +  A  +  R  +   S  A+  L  A  T   R   L+ + R    R  Y+A   D E   +   +  NHA      E P L   +   TT T+A    T+ SLA++A+AT+ALA+ LT AV +GEV  SP +AG G     G A    AFAELEPLPLKSYSEEFSS LAPVNTVRG+WRTRE RNDGSALP E GRLG++GICGGRLSFKGFVGAGKGTVEYKGCG+REGKGRWLTKPKNIVNGR
Sbjct:    9 LLLVSAANPLVGWCLLVRPAHPITSRRTSSSSSRSAADLLPTATGTPDGRRQRLY-SSRTSTSRGYYKAEEQDHEAPPSSLRRIPNHA------ELPSLVRDSNAVTTTTTAE---TVASLARQALATVALAAVLTPAVFIGEVTVSPLLAGKG-----GVAPPTAAFAELEPLPLKSYSEEFSSGLAPVNTVRGLWRTRETRNDGSALPQEAGRLGRKGICGGRLSFKGFVGAGKGTVEYKGCGDREGKGRWLTKPKNIVNGR 257
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1010.189.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDF5_ECTSI1.610e-6554.17Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1010contigS-firma_F_contig1010:7939..10034 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_000810.1
Exons3
Model size1100
Cds size1044
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1010.189.1prot_S-firma_F_contig1010.189.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1010 7948..9987 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.0547488-UTR-S-firma_F_contig1010:7938..79471622815537.0547488-UTR-S-firma_F_contig1010:7938..7947Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1010 7939..7947 -
1696949398.8106914-UTR-S-firma_F_contig1010:7938..79471696949398.8106914-UTR-S-firma_F_contig1010:7938..7947Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1010 7939..7947 -
1622815537.1065447-UTR-S-firma_F_contig1010:9987..100341622815537.1065447-UTR-S-firma_F_contig1010:9987..10034Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1010 9988..10034 -
1696949398.8802478-UTR-S-firma_F_contig1010:9987..100341696949398.8802478-UTR-S-firma_F_contig1010:9987..10034Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1010 9988..10034 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.0701044-CDS-S-firma_F_contig1010:7947..84411622815537.0701044-CDS-S-firma_F_contig1010:7947..8441Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1010 7948..8441 -
1696949398.820935-CDS-S-firma_F_contig1010:7947..84411696949398.820935-CDS-S-firma_F_contig1010:7947..8441Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1010 7948..8441 -
1622815537.0829916-CDS-S-firma_F_contig1010:8925..92471622815537.0829916-CDS-S-firma_F_contig1010:8925..9247Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1010 8926..9247 -
1696949398.834325-CDS-S-firma_F_contig1010:8925..92471696949398.834325-CDS-S-firma_F_contig1010:8925..9247Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1010 8926..9247 -
1622815537.0928323-CDS-S-firma_F_contig1010:9759..99871622815537.0928323-CDS-S-firma_F_contig1010:9759..9987Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1010 9760..9987 -
1696949398.8488085-CDS-S-firma_F_contig1010:9759..99871696949398.8488085-CDS-S-firma_F_contig1010:9759..9987Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1010 9760..9987 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1010.189.1

>prot_S-firma_F_contig1010.189.1 ID=prot_S-firma_F_contig1010.189.1|Name=mRNA_S-firma_F_contig1010.189.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=348bp
MRRTVTLSLALVLARRADAFFGSGLASPSLQLACRTSSDRPTPLFPAGRD
PAGRLLYRASNDDCECSRAEEEQKNHAAPIVRLEDPDLDGRATGTTTATS
ASAAATLVSLAKRAVATLALASFLTSAVSVGEVAFSPPMAGPGVIGAGGG
AFVAPAFAELEPLPLKSYSEEFSSALAPVNTVRGIWRTREIRNDGSALPA
EGGRLGQRGICGGRLSFKGFVGAGKGTVEYKGCGEREGKGRWLTKPKNIV
NGRWDVTWWMVDGFFRRLLEVRSVCSLGRNVLGYPPLARVLKSSIHPLGV
VVLDSRSSQESFVSIPPLLTPPPSTITSMAAGTDLSTSAASPPLERC*
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mRNA from alignment at S-firma_F_contig1010:7939..10034-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1010.189.1 ID=mRNA_S-firma_F_contig1010.189.1|Name=mRNA_S-firma_F_contig1010.189.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2096bp|location=Sequence derived from alignment at S-firma_F_contig1010:7939..10034- (Sphaerotrichia firma ET2_F female)
CGCAAGGGCGCTGGGCGCTTGTCCGTGTCAGCGTGTGCGATCCAGCCATG
AGGAGGACCGTGACTCTTTCGCTGGCCTTAGTGCTTGCGAGGAGGGCCGA
TGCTTTCTTTGGATCGGGCTTGGCGAGTCCATCTCTCCAGCTCGCGTGTC
GAACATCGTCCGACAGACCAACCCCGTTGTTCCCCGCTGGAAGAGATCCT
GCGGGGCGACTGCTGTACAGAGCCAGCAACGACGACTGCGAGTGCTCCCG
GGCCGAAGAGGAACAGAAGAACCACGTGAGTGCTGGCATGGGCTTCGTGG
CGGCTGTTCGTGGTTCATGCGCGTGTTTGACCGTTCGTAAAAATCGACAC
ATGAAGCGGTGAGAAAACAAAAAACATGAACAGAGCAGCGTGCCATCCGA
CGACAGACGACCGGGGGGGGGGGCTGGCTGTGTGACCAGCTCGTCGACAC
TCTACTCGGTGTGTACGCACTATTGTGGTTACCTCCTTCGTTTCGTCTAT
GGTGTGCCCCCTCTGTGTATGTGGGACGATTTGATACCCACGCAGGGTTG
ACAGGAAGTGGTGTGAGTCAGACACTGGTCTAAAAGGTCTGGTGAGATGT
AAGAGCTTTCCCAAGAGGGGTCGGCACGAGAAGAGAGAATCACTATTGGA
TTTGGTTGTGTTTGGTAGTATTGCTATCTTACTTGCTGTGTGGTGTGAGT
TTGCACGTCTCCGTTCTTTGGTTGCACACTAGTTTCAAACCCAATAGTCT
CGTATACCGGGCCTGTCCTGCTGTGCTGTGTACGCAGGCCGCGCCCATCG
TCCGACTAGAAGACCCGGACCTAGACGGCCGTGCCACAGGTACCACCACC
GCCACAAGTGCTTCTGCCGCTGCCACCTTGGTGTCTTTGGCAAAGAGAGC
GGTAGCGACGTTAGCACTAGCATCGTTTCTCACTTCAGCGGTTTCTGTCG
GCGAGGTGGCGTTTTCGCCGCCGATGGCGGGCCCCGGCGTCATCGGCGCC
GGCGGGGGAGCGTTTGTGGCGCCGGCGTTCGCCGAGCTGGAGCCGTTGCC
GCTAAAGTCGTACTCGGAAGAATTCTCCAGTGCGCTCGCGCCCGTCAACA
CTGTGCGCGGTAAGCCAAAGTGCTCATCTGAAGGACGGGCCTTGGTAGAT
CGTTGCTATTGGCGTAGGAAGTACGTGCGGCAGCACTGCTGCACCTGACA
CGCCCGCCTCTGCTTTCGATGTCACTGCTGTTTGTCTTGGTGCTCACGTT
TGCAGGGATTTTCTGTTTTTGTTGTCTGCGCCTTTGTTTGGTTCGATCTC
GAGACCCCGGGGTTGTTTGCATGAAACAACTTGTTTTAGGCCAGTCGTGC
GAGGTAAGAAAATCGAGTGCTCCCATCCAACTTACAGCCGGCGTGTGTGC
TGCTTTACACTATAGCTCTCCGGATCGTTTGCACCTGTACCGCTGTACCA
CCTCGACCTTACTTTGACACACAGTATCGATGCTACAGTATTTCCACCAC
TTCCCTGCGTGTAATCCACCTCGACGTTTTTTCCATTTCGATTGTGACGG
CATAAACTATCGTTTTCCGTGCAATGTGCGCTTGCGTCCATAGGTATATG
GCGGACACGTGAGATACGCAACGACGGCTCCGCACTGCCGGCGGAAGGGG
GAAGGCTAGGCCAGAGAGGCATCTGCGGGGGGCGGCTATCCTTCAAGGGG
TTTGTGGGGGCTGGCAAGGGGACGGTGGAGTACAAAGGGTGCGGGGAACG
TGAAGGCAAGGGGAGGTGGCTGACCAAGCCCAAGAATATCGTCAACGGAA
GGTGGGATGTTACATGGTGGATGGTGGATGGCTTCTTTCGCCGCCTTCTC
GAAGTGCGAAGCGTTTGCTCATTGGGGCGAAACGTGTTGGGGTACCCACC
TCTCGCACGCGTCCTCAAGAGCTCTATCCACCCTCTCGGTGTTGTAGTAC
TTGATTCGAGATCGTCACAAGAGTCTTTTGTGTCGATCCCTCCGCTCTTG
ACCCCTCCCCCCTCCACGATCACCTCCATGGCCGCCGGTACAGACCTTTC
GACAAGTGCAGCATCTCCCCCTCTAGAACGTTGTTGACTTCGTGAC
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Coding sequence (CDS) from alignment at S-firma_F_contig1010:7939..10034-

>mRNA_S-firma_F_contig1010.189.1 ID=mRNA_S-firma_F_contig1010.189.1|Name=mRNA_S-firma_F_contig1010.189.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2088bp|location=Sequence derived from alignment at S-firma_F_contig1010:7939..10034- (Sphaerotrichia firma ET2_F female)
ATGAGGAGGACCGTGACTCTTTCGCTGGCCTTAGTGCTTGCGAGGAGGGC
CGATGCTTTCTTTGGATCGGGCTTGGCGAGTCCATCTCTCCAGCTCGCGT
GTCGAACATCGTCCGACAGACCAACCCCGTTGTTCCCCGCTGGAAGAGAT
CCTGCGGGGCGACTGCTGTACAGAGCCAGCAACGACGACTGCGAGTGCTC
CCGGGCCGAAGAGGAACAGAAGAACCACATGAGGAGGACCGTGACTCTTT
CGCTGGCCTTAGTGCTTGCGAGGAGGGCCGATGCTTTCTTTGGATCGGGC
TTGGCGAGTCCATCTCTCCAGCTCGCGTGTCGAACATCGTCCGACAGACC
AACCCCGTTGTTCCCCGCTGGAAGAGATCCTGCGGGGCGACTGCTGTACA
GAGCCAGCAACGACGACTGCGAGTGCTCCCGGGCCGAAGAGGAACAGAAG
AACCACGCCGCGCCCATCGTCCGACTAGAAGACCCGGACCTAGACGGCCG
TGCCACAGGTACCACCACCGCCACAAGTGCTTCTGCCGCTGCCACCTTGG
TGTCTTTGGCAAAGAGAGCGGTAGCGACGTTAGCACTAGCATCGTTTCTC
ACTTCAGCGGTTTCTGTCGGCGAGGTGGCGTTTTCGCCGCCGATGGCGGG
CCCCGGCGTCATCGGCGCCGGCGGGGGAGCGTTTGTGGCGCCGGCGTTCG
CCGAGCTGGAGCCGTTGCCGCTAAAGTCGTACTCGGAAGAATTCTCCAGT
GCGCTCGCGCCCGTCAACACTGTGCGCGGCCGCGCCCATCGTCCGACTAG
AAGACCCGGACCTAGACGGCCGTGCCACAGGTACCACCACCGCCACAAGT
GCTTCTGCCGCTGCCACCTTGGTGTCTTTGGCAAAGAGAGCGGTAGCGAC
GTTAGCACTAGCATCGTTTCTCACTTCAGCGGTTTCTGTCGGCGAGGTGG
CGTTTTCGCCGCCGATGGCGGGCCCCGGCGTCATCGGCGCCGGCGGGGGA
GCGTTTGTGGCGCCGGCGTTCGCCGAGCTGGAGCCGTTGCCGCTAAAGTC
GTACTCGGAAGAATTCTCCAGTGCGCTCGCGCCCGTCAACACTGTGCGCG
GTATATGGCGGACACGTGAGATACGCAACGACGGCTCCGCACTGCCGGCG
GAAGGGGGAAGGCTAGGCCAGAGAGGCATCTGCGGGGGGCGGCTATCCTT
CAAGGGGTTTGTGGGGGCTGGCAAGGGGACGGTGGAGTACAAAGGGTGCG
GGGAACGTGAAGGCAAGGGGAGGTGGCTGACCAAGCCCAAGAATATCGTC
AACGGAAGGTGGGATGTTACATGGTGGATGGTGGATGGCTTCTTTCGCCG
CCTTCTCGAAGTGCGAAGCGTTTGCTCATTGGGGCGAAACGTGTTGGGGT
ACCCACCTCTCGCACGCGTCCTCAAGAGCTCTATCCACCCTCTCGGTGTT
GTAGTACTTGATTCGAGATCGTCACAAGAGTCTTTTGTGTCGATCCCTCC
GCTCTTGACCCCTCCCCCCTCCACGATCACCTCCATGGCCGCCGGTACAG
ACCTTTCGACAAGTGCAGCATCTCCCCCTCTAGAACGTTGTTGAGTATAT
GGCGGACACGTGAGATACGCAACGACGGCTCCGCACTGCCGGCGGAAGGG
GGAAGGCTAGGCCAGAGAGGCATCTGCGGGGGGCGGCTATCCTTCAAGGG
GTTTGTGGGGGCTGGCAAGGGGACGGTGGAGTACAAAGGGTGCGGGGAAC
GTGAAGGCAAGGGGAGGTGGCTGACCAAGCCCAAGAATATCGTCAACGGA
AGGTGGGATGTTACATGGTGGATGGTGGATGGCTTCTTTCGCCGCCTTCT
CGAAGTGCGAAGCGTTTGCTCATTGGGGCGAAACGTGTTGGGGTACCCAC
CTCTCGCACGCGTCCTCAAGAGCTCTATCCACCCTCTCGGTGTTGTAGTA
CTTGATTCGAGATCGTCACAAGAGTCTTTTGTGTCGATCCCTCCGCTCTT
GACCCCTCCCCCCTCCACGATCACCTCCATGGCCGCCGGTACAGACCTTT
CGACAAGTGCAGCATCTCCCCCTCTAGAACGTTGTTGA
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