mRNA_S-firma_F_contig101.181.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig101.181.1 vs. uniprot
Match: D8LFQ9_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFQ9_ECTSI) HSP 1 Score: 464 bits (1194), Expect = 7.580e-137 Identity = 494/1362 (36.27%), Postives = 593/1362 (43.54%), Query Frame = 3
Query: 27 GQRSSRDVTLGADSGYLTPPKEGQERGGRGLASRDGGACSQPSG---TAWPERAGGMPGEGRGARSAXXXXXXXXXXSNKAGKTRRVKSPSAPLEGLHKSDGCFVTPKKISRPDFGGG---------VRIMGVSPSSHEPVRIAPMVRRCSS---------IDARHNDDFDDHAAGS-----AEYSNRGDGXXXXXXXXXFSDGRSHDGTSGXXXXXXXXVTTPAADAFYQRGXXAGFVVGRSRERLSXXXXXXXXXXRSGDSDGAER-----------GLEAAEKERDAAELVSVGYDEWKEACTAEGKIYYYNRRTRVPRWTLPPTATYVPDPNRPAGYRIFALAPTAVTVSKGSTNANATGSDRAKETTQGRSY--AARGTVETGTSSSHEGDSCALQESKGKRGDGSPPTALS--LSTATPATATMTTGGTPCSPQSFPSGTSSSSTAAAADKAASRPSAVESRSAATASQRFVVHKSGLW----VSSSQPAAPTPPSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVAQPNPETRAENA-TPPAPQIDPAGXXXXXXXXXXVATCLAVGTHGE-PLEPATPXXXXXXXXXXXXDGAELEDSEGLPSSTVSESAVGAVPPSQEAPEGPAEGDAASLVGSPSSAEGGPAPDYT--------------SSAAG---SEAAMVAXXXXXXXXXXXXESMEEPATLKTTRRAVAAVDG--GGSETQSMAAPPAGVPPVSAAGPLFRAGQRETESEEANEEGRGGXXXXXXXXXXXXXXXXXXL------------STTLKDFVHTVRAESGGRRQDDSHAAPSPGSRAVAGARERGVNGLSRTNKGGMEEEAAVFSTARSPRTLRRRPLGPVRRSEDLGPSLLPSRCAL-----------ELVASFSLWPAAASRAATAAGTPTTALAGLPVNQARSRFVSPSHSYLDERAAAAAARQDGKTVRLARXXXXXXXXXXVFGGAQDKGL-PGSSVLRHRVRRQLFSEDSEAKPLVFCPFCGEGVICAGGLQAHLQGCYVLDRCRGGETHKQVEVAIKAISMQTQKRDTPKPAAGEHRYAVFSLDDDSVRGSTTVLQQAPPAFLSQTATSTGPENVLG----SQTPDVGG----------AGPEASGAGLEFSLGEGEVGAAVE-RCEGCGRTFAPGRLQSHAKACRSVFLERRAPYDPRAMRAKGTPLEFFQQPIGASTPDADPSTSGKNKKGDRGNATVSRRVGGAGVGGKKRSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRTNSGAATTATLAKLPVVEGSAHCPFCSGSVPRAKLSAHLLRCKRLRSTQGASKAE 3797
G + LG+ + LTPPK + G R LA +P TAWP+RA G G RS XXXXXXX + R SP+ PLEGLHK +GCFVTPKKIS G R MGVSPS HEPVRIAPMVR S AA S A + D FS + G T D +++ + FVVGRS ER+S XX G+ AA DAAEL++V +DEWKEA TAEGKIYYYNRRTRVPRWTLPPTAT+VPDPNRPAGYRIFALA T V ++ G + + E T G RG G + E DS + + G G P ++ LS TP MTT + S AA++ A+A + V +G V++ + PP+A T ENA T A P G V H E P+ P P + S +PS G + EGG AP SA G + V +EPA + TTR A G E ++ A P AGP+ + E E+ A G+ G XXXXXXX S +L+DFVH VR +SGGR + S +R G + G R+ M ++ FS+ R P T RRPLGPVRRSE++ L SR + E A +LW ATAA TPTTALAG+PV Q S S A A R G V + G + +GL PGSSVLRHRVRRQLFSEDSEA+PLVFCPFCGEGV+ AGGL+ HLQ CYVLDRCRG ETHKQVEVAI+A+S++ Q + A H SL+ S + S+T+LQ A P F+S+ GPENVL S+ ++GG A E SG GLE SLG G G A E RC CGRTFAPGRL+SHAKACRSVFLERR PYDP+AMRA+GTPLEFFQQPIGA++ D +PSTSG GD G SRR GVG S G + A L LP VEGSAHCPFCS S+PRAKLSAHLLRCK+LR +Q + E
Sbjct: 19 GSSPASAALLGSTTDCLTPPKLDGQGGDRDLA-----LVMKPERAVRTAWPDRAAGRATGGYCERSDRGGXXXXXXXXX---RNARAVSPTLPLEGLHKMEGCFVTPKKISGHVLLGNRGXXXXXXXXRRMGVSPSDHEPVRIAPMVRHDRSDXXXXXXXXXXXXXXXXXXXXAATSMHTRTAAKQHEND----RAYTLGFSTTETRPVDRGDRKTGSTGATAVVDDFPWKQTESSRFVVGRSSERMSAAESMGRGXXXXXXXXXXXXXXXXXXXXCLGGVAAAG--HDAAELLTVEHDEWKEARTAEGKIYYYNRRTRVPRWTLPPTATFVPDPNRPAGYRIFALAAT-VNINIGDKSTAPASATSGSERTSGGVIDPLLRGPGGAGAGGAREADSSRERFGRDNSGGGGAPLLIAPTLSEVTP----MTT-------------SDLESPAASSPTTXXXXXXXXXXXXASARVKNGVGTTGCGDGGAVTTPKRRESAPPAAARSPRDNGGTVETL----------------------------TSTENAHTVSASPAPPTGYFSADETASLVEKTRDDDKHPERPVSPTAPRL-----------SCSVGHSMSVPS-----------------------------AGGGAGIEGGAAPPXXXXXXXXXXXXXXXXGSAVGEGKTPRRQVEHGVEVGSACLTEVLPDEPAAV-TTRAAXXXXXXVREGEEFETEAQLTVDAPTTGGAGPVKTDRELEMEAAAAMATGQQGLSSQSGGAGQRXXXXXXXXXXXXXXXXXXXSSASLQDFVHYVRVQSGGRGDASLSSPASRSNRRRGGGQGAGAM---RSGDAHMSKDKEAFSSERIPGTFHRRPLGPVRRSEEMEHPLS-SRSSKPQEHHSHQGLEEPAADTALW-------ATAAETPTTALAGVPVYQTHXXXXXXS-SRSRRSAQADTVRYSGSGVSGGKTGVCDAKG----GSSGGRGLLPGSSVLRHRVRRQLFSEDSEARPLVFCPFCGEGVVRAGGLRDHLQECYVLDRCRGSETHKQVEVAIRAVSVEHQMHTS---ATNTHGKGASSLNGGSFQDSSTLLQHALPPFVSK---GNGPENVLAPAVASENSELGGVVATGGGRGAAAGEVSGVGLEVSLGGGGAGGAEEERCGDCGRTFAPGRLRSHAKACRSVFLERRRPYDPKAMRARGTPLEFFQQPIGAASSDGNPSTSGTG--GDGGGTAASRR----GVGRNNPSSVGGSSVRREGSSQSGGADCVSPGELDVSVGTGGGSSRGAGGEVGGSFLRRSKKVA-LKTLPAVEGSAHCPFCSTSIPRAKLSAHLLRCKKLRRSQTCPRPE 1250
BLAST of mRNA_S-firma_F_contig101.181.1 vs. uniprot
Match: A0A6H5KQR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQR3_9PHAE) HSP 1 Score: 314 bits (804), Expect = 1.060e-89 Identity = 219/433 (50.58%), Postives = 251/433 (57.97%), Query Frame = 3
Query: 2529 ATAAGTPTTALAGLPVNQARSRFVSPSHSYLDERAAAAAARQDGKTVRLARXXXXXXXXXXVFGGAQDKGL-PGSSVLRHRVRRQLFSEDSEAKPLVFCPFCGEGVICAGGLQAHLQGCYVLDRCRGGETHKQVEVAIKAISMQTQKRDTPKPAAGEHRYAVFSLDDDSVRGSTTVLQQAPPAFLSQTATSTGPENVLG----SQTPDVGG----------AGPEASGAGLEFSLGEGEVGAA-VERCEGCGRTFAPGRLQSHAKACRSVFLERRAPYDPRAMRAKGTPLEFFQQPIGASTPDADPSTSGKNKKGDRGNATVSRRVGGAGVGGKKRSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRTNSGAATTATLAKLPVVEGSAHCPFCSGSVPRAKLSAHLLRCKRLRSTQ 3779
A+AA TPTTALAG+P Q S S A A R G V XXXXXX ++ +GL PGSSVLRHRVRRQLFSEDSEA+PLVFCPFCGEGV+ A GL+ HLQ CYVLDRCRG ETHKQVEVAIKA+S++ Q + A H SL+D S + S+T+LQ A F+S+ PENVL S+ ++G AG E SG E S G G G A ERCE CGRTFAPGRL+SHAKACRSVFLERR PYDP+AMRA+GTPLEFFQQPIGA++ D +P+TSGK GD G SRR GVG K S G + A L LP VEG AHCPFCS S+PRAKLSAHLLRCK+LR +Q
Sbjct: 34 ASAAETPTTALAGVPGYQTHHHHPS---SRSRRSAQADTVRYSGSGV----GGGNXXXXXXXXXXSEGRGLLPGSSVLRHRVRRQLFSEDSEARPLVFCPFCGEGVVRARGLRDHLQECYVLDRCRGSETHKQVEVAIKAVSVENQMHTS---ATNTHGRRASSLNDGSFQDSSTLLQHALSPFVSK---GNDPENVLAPAVASENSELGRVVATGGLRGTAGGEVSGVSSEVSSGGGGAGGAKFERCEDCGRTFAPGRLRSHAKACRSVFLERRRPYDPKAMRARGTPLEFFQQPIGAASSD-NPTTSGKG--GDGGGNAASRR----GVGRNKPSSVGGSSVRREGSSESGDADRVSPGGLDVSVGTGGGSSRGVGGEVGGSFLRRSKKVA-LKTLPAVEGRAHCPFCSSSIPRAKLSAHLLRCKKLRRSQ 445
BLAST of mRNA_S-firma_F_contig101.181.1 vs. uniprot
Match: A0A835Z7V0_9STRA (WW domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7V0_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 8.830e-17 Identity = 67/205 (32.68%), Postives = 84/205 (40.98%), Query Frame = 3
Query: 2751 SVLRHRVRRQLFSEDSEAKPLVFCPFCGEGVICAGGLQAHLQGCYVLDRCRGGETHKQVEVAIKAISMQTQKRDTPKPAAGEHRYAVFSLDDDSVRGSTTVLQQAPPAFLSQTATSTGPENVLGSQTPDVGGAGPEASGAGLEFSLGEGEVGAAVERCEGCGRTFAPGRLQSHAKACRSVFLERRAPYDPRAMRAKGTPLEFFQQ 3365
S +RH RRQLFSE + A+P V+CP+CGE A L AHL C VL+R RGG + VE A+ A RD A + R F G + E+C CGRTFA GR+ +HA+ CR VF RR +D R R +GTPL F Q+
Sbjct: 683 SAVRHGPRRQLFSEGAPAQPSVYCPYCGERED-AAALAAHLAACVVLERARGGPAQRSVEAALLAA------RDAADAAXXXXXXXXXXXXXXAPRE---------------------------------------------RFVRSGGGARSGEEQCADCGRTFAEGRIDAHARVCRRVFGARRPVFDGRERRLRGTPLAFMQR 835 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig101.181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig101.181.1 >prot_S-firma_F_contig101.181.1 ID=prot_S-firma_F_contig101.181.1|Name=mRNA_S-firma_F_contig101.181.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=1420bp MKAKGQRSSRDVTLGADSGYLTPPKEGQERGGRGLASRDGGACSQPSGTAback to top mRNA from alignment at S-firma_F_contig101:16745..26578- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig101.181.1 ID=mRNA_S-firma_F_contig101.181.1|Name=mRNA_S-firma_F_contig101.181.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=9834bp|location=Sequence derived from alignment at S-firma_F_contig101:16745..26578- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig101:16745..26578- >mRNA_S-firma_F_contig101.181.1 ID=mRNA_S-firma_F_contig101.181.1|Name=mRNA_S-firma_F_contig101.181.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=8520bp|location=Sequence derived from alignment at S-firma_F_contig101:16745..26578- (Sphaerotrichia firma ET2_F female)back to top |