mRNA_S-firma_F_contig10096.174.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10096.174.1
Unique NamemRNA_S-firma_F_contig10096.174.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10096.174.1 vs. uniprot
Match: A0A3D2GXG9_9PROT (Uncharacterized protein n=1 Tax=Holosporales bacterium TaxID=2053559 RepID=A0A3D2GXG9_9PROT)

HSP 1 Score: 90.9 bits (224), Expect = 3.600e-20
Identity = 39/88 (44.32%), Postives = 59/88 (67.05%), Query Frame = 1
Query:   22 LMSDCKAIIAMENKRLRGYVTEKIVDAFRTGAIPVYWGDMEFVESVFNPEAYFDVAKYARMEDAADALAALLTDDRALRSKQHQPVLQ 285
            L+ D   +IA EN+  +GYVTEKI++A++ GAIP+YWGD + V   FNP+++ DV +YA  E+ ADA+ AL  +   L+ K   P+ +
Sbjct:  104 LLKDYNFVIAAENRDYKGYVTEKIINAYKVGAIPIYWGDADTVREFFNPDSFMDVTQYASFEELADAVVALTKEPAELQKKLRVPLFK 191          
BLAST of mRNA_S-firma_F_contig10096.174.1 vs. uniprot
Match: A0A1F2Z6L5_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium RIFCSPHIGHO2_01_FULL_41_14 TaxID=1797217 RepID=A0A1F2Z6L5_9PROT)

HSP 1 Score: 90.9 bits (224), Expect = 1.990e-19
Identity = 39/88 (44.32%), Postives = 59/88 (67.05%), Query Frame = 1
Query:   22 LMSDCKAIIAMENKRLRGYVTEKIVDAFRTGAIPVYWGDMEFVESVFNPEAYFDVAKYARMEDAADALAALLTDDRALRSKQHQPVLQ 285
            L+ D   +IA EN+  +GYVTEKI++A++ GAIP+YWGD + V   FNP+++ DV +YA  E+ ADA+ AL  +   L+ K   P+ +
Sbjct:  236 LLKDYNFVIAAENRDYKGYVTEKIINAYKVGAIPIYWGDADTVREFFNPDSFMDVTQYASFEELADAVVALTKEPAELQKKLRVPLFK 323          
BLAST of mRNA_S-firma_F_contig10096.174.1 vs. uniprot
Match: A0A2E3BZ69_9PROT (Uncharacterized protein n=1 Tax=Magnetococcales bacterium TaxID=2026759 RepID=A0A2E3BZ69_9PROT)

HSP 1 Score: 77.4 bits (189), Expect = 8.660e-15
Identity = 33/89 (37.08%), Postives = 56/89 (62.92%), Query Frame = 1
Query:   19 DLMSDCKAIIAMENKRLRGYVTEKIVDAFRTGAIPVYWGDMEFVESVFNPEAYFDVAKYARMEDAADALAALLTDDRALRSKQHQPVLQ 285
            D   D + +IAMENK + GYVTEKI++A+  GAIP+YWG+  +V+ +FNP ++ DV+ ++ +E   + +  L  D+   +     P+ +
Sbjct:  175 DYFKDYRFVIAMENKNMNGYVTEKILNAYIAGAIPIYWGNSSYVKEIFNPLSFIDVSDFSCIEACVEYILELDKDEERRKKIASVPLFK 263          
BLAST of mRNA_S-firma_F_contig10096.174.1 vs. uniprot
Match: H3H520_PHYRM (Fucosyltransferase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H520_PHYRM)

HSP 1 Score: 76.3 bits (186), Expect = 1.940e-14
Identity = 39/108 (36.11%), Postives = 60/108 (55.56%), Query Frame = 1
Query:    1 YKDSWVDLMSDCKAIIAMENKRLRGYVTEKIVDAFRTGAIPVYWGDMEFVESVFNPEAYFDVAKYARMEDAADALAALLTDDRA---LRSKQHQPVLQPGGYR-FFDW 312
            Y D  V   +  K ++A EN R  GYVTEK+V+AF  G++PVYWGD + V  +FNPE++ D  ++  ++D A+ +  +  DD      R ++  PV     +   F W
Sbjct:  155 YNDDAVRRYAPYKFVLAFENTRAAGYVTEKLVNAFLAGSVPVYWGDSKTVSELFNPESFIDCGRFDSLQDCAEYVVRV--DDSPEMYTRMRREAPVANMTAFNEAFSW 260          
BLAST of mRNA_S-firma_F_contig10096.174.1 vs. uniprot
Match: A0A7J6QED0_PEROL (Fucosyltransferase n=2 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6QED0_PEROL)

HSP 1 Score: 74.7 bits (182), Expect = 1.830e-13
Identity = 41/105 (39.05%), Postives = 62/105 (59.05%), Query Frame = 1
Query:    1 YKDSWVDLMSDCKAIIAMENKRLRGYVTEKIVDAFRTGAIPVYWGDMEFVESVFNPEAYFDVAKYARMEDAADALAAL-LTDDRALRSKQHQPVLQPGGYRFFDW 312
            + D  V++ +  K +IAMEN+ + GYVTEKIV+AF  GAIP+Y+GD   V+S+FN E++ D+A +     AA+ + +L   +  ALR  +        G   F W
Sbjct:  411 FYDDAVEIYTPYKFVIAMENRMVPGYVTEKIVNAFLAGAIPIYYGDSA-VDSLFNRESFIDLADFEDFRSAAEFVVSLNFNESAALRFVETSVFAGEDGLYPFSW 514          
BLAST of mRNA_S-firma_F_contig10096.174.1 vs. uniprot
Match: A0A7J6MYH5_PERCH (Fucosyltransferase n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6MYH5_PERCH)

HSP 1 Score: 73.6 bits (179), Expect = 4.630e-13
Identity = 39/103 (37.86%), Postives = 58/103 (56.31%), Query Frame = 1
Query:    1 YKDSWVDLMSDCKAIIAMENKRLRGYVTEKIVDAFRTGAIPVYWGDMEFVESVFNPEAYFDVAKYARMEDAADALAALLTDDRALRSKQHQPVLQP--GGYRF 303
            + D  V++    K +IAMEN+   GYVTEKIV+AF  GAIP+Y+GD     S+FNP ++ D+  +    +AA  +  +  D+ + R    +PV     G Y F
Sbjct:  386 FYDDAVEIYKPYKFVIAMENRVAPGYVTEKIVNAFLAGAIPIYYGDSA-ARSIFNPASFIDLDDFNDFGEAAKTVVEIALDESSARKYVEEPVFSTTNGSYPF 487          
BLAST of mRNA_S-firma_F_contig10096.174.1 vs. uniprot
Match: A0A8K1CPR8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CPR8_PYTOL)

HSP 1 Score: 73.2 bits (178), Expect = 6.520e-13
Identity = 33/95 (34.74%), Postives = 54/95 (56.84%), Query Frame = 1
Query:    1 YKDSWVDLMSDCKAIIAMENKRLRGYVTEKIVDAFRTGAIPVYWGDMEFVESVFNPEAYFDVAKYARMEDAADALAALLTDDRALRSKQHQPVLQ 285
            Y D  V   S+ K +IA E  ++ GYVTEK+V+AF  G +P+Y+G    V  +FNP ++ D  ++AR+ D A  +  +  D+      + +P +Q
Sbjct:  655 YNDEGVFTFSNYKFVIAFETAQVPGYVTEKLVNAFLAGTVPIYFGHSASVSHIFNPRSFIDCGRFARLRDCAAFVLRVHRDEEIYEQFRKEPPIQ 749          
BLAST of mRNA_S-firma_F_contig10096.174.1 vs. uniprot
Match: W2JNC7_PHYPR (Fucosyltransferase n=10 Tax=Phytophthora TaxID=4783 RepID=W2JNC7_PHYPR)

HSP 1 Score: 72.8 bits (177), Expect = 9.010e-13
Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = 1
Query:    1 YKDSWVDLMSDCKAIIAMENKRLRGYVTEKIVDAFRTGAIPVYWGDMEFVESVFNPEAYFDVAKYARMEDAADALAALLTDDRAL-RSKQHQPVLQPGG-YRFFDW 312
            Y D  V   +  K +IA EN R  GYVTEK+V+AF  G++P+Y GD + V  +FNP ++ D  ++  ++D A+ +  +        R +Q +PV      Y+ F W
Sbjct:  829 YNDDAVRQYAPYKFVIAFENTRTSGYVTEKLVNAFLAGSVPIYLGDSKTVSQLFNPASFIDCGRFDDLQDCAEFVVEVDNSPELYSRMRQERPVTNMTAFYQAFSW 934          
BLAST of mRNA_S-firma_F_contig10096.174.1 vs. uniprot
Match: K3X706_GLOUD (Fucosyltransferase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X706_GLOUD)

HSP 1 Score: 72.4 bits (176), Expect = 1.230e-12
Identity = 33/72 (45.83%), Postives = 47/72 (65.28%), Query Frame = 1
Query:    1 YKDSWVDLMSDCKAIIAMENKRLRGYVTEKIVDAFRTGAIPVYWGDMEFVESVFNPEAYFDVAKYARMEDAA 216
            Y D  V L S  K +IA EN +  GYVTEK+V+AF  G++P+Y+G  E V  VFNPE++ D  ++A + + A
Sbjct:  838 YNDDAVRLYSQYKFVIAFENGQRPGYVTEKLVNAFLAGSVPIYFGHSESVAQVFNPESFIDCGRFAMLRECA 909          
BLAST of mRNA_S-firma_F_contig10096.174.1 vs. uniprot
Match: A0A8K1C283_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C283_PYTOL)

HSP 1 Score: 71.6 bits (174), Expect = 2.270e-12
Identity = 38/106 (35.85%), Postives = 59/106 (55.66%), Query Frame = 1
Query:    1 YKDSWVDLMSDCKAIIAMENKRLRGYVTEKIVDAFRTGAIPVYWGDMEFVESVFNPEAYFDVAKYARMED-AADALAALLTDDRALRSKQHQPVLQPGGYR-FFDW 312
            Y D  V + S+ K +IA EN R+ GY+TEKIV+A   G++PVY+G    V  +FNPE++ D   +  + D AA  L    +D+     ++  P++    +R  F W
Sbjct:  683 YNDDAVVIFSEYKFVIAFENARVPGYLTEKIVNALLAGSVPVYFGHSTTVAQLFNPESFIDCGNFPLLRDCAAYVLQVHRSDELYAAYRRAPPIVNRTAFRQHFSW 788          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10096.174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D2GXG9_9PROT3.600e-2044.32Uncharacterized protein n=1 Tax=Holosporales bacte... [more]
A0A1F2Z6L5_9PROT1.990e-1944.32Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A2E3BZ69_9PROT8.660e-1537.08Uncharacterized protein n=1 Tax=Magnetococcales ba... [more]
H3H520_PHYRM1.940e-1436.11Fucosyltransferase n=1 Tax=Phytophthora ramorum Ta... [more]
A0A7J6QED0_PEROL1.830e-1339.05Fucosyltransferase n=2 Tax=Perkinsus olseni TaxID=... [more]
A0A7J6MYH5_PERCH4.630e-1337.86Fucosyltransferase n=1 Tax=Perkinsus chesapeaki Ta... [more]
A0A8K1CPR8_PYTOL6.520e-1334.74Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W2JNC7_PHYPR9.010e-1334.91Fucosyltransferase n=10 Tax=Phytophthora TaxID=478... [more]
K3X706_GLOUD1.230e-1245.83Fucosyltransferase n=1 Tax=Globisporangium ultimum... [more]
A0A8K1C283_PYTOL2.270e-1235.85Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10096contigS-firma_F_contig10096:855..1166 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog164328.Phyra83545
PFAMsGlyco_transf_10
Max annot lvl4776|Peronosporales
Evalue2.41e-14
EggNOG OGsKOG2619@1|root,KOG2619@2759|Eukaryota,3QHU6@4776|Peronosporales
DescriptionGlycosyltransferase family 10 (fucosyltransferase) C-term
COG categoryEG
Hectar predicted targeting categoryother localisation
Exons1
Model size312
Cds size288
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815535.6506581-CDS-S-firma_F_contig10096:854..11421622815535.6506581-CDS-S-firma_F_contig10096:854..1142Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10096 855..1142 -
1696949397.5069563-CDS-S-firma_F_contig10096:854..11421696949397.5069563-CDS-S-firma_F_contig10096:854..1142Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10096 855..1142 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815535.666321-UTR-S-firma_F_contig10096:1142..11661622815535.666321-UTR-S-firma_F_contig10096:1142..1166Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10096 1143..1166 -
1696949397.5393074-UTR-S-firma_F_contig10096:1142..11661696949397.5393074-UTR-S-firma_F_contig10096:1142..1166Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10096 1143..1166 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10096.174.1prot_S-firma_F_contig10096.174.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10096 855..1142 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10096.174.1

>prot_S-firma_F_contig10096.174.1 ID=prot_S-firma_F_contig10096.174.1|Name=mRNA_S-firma_F_contig10096.174.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=96bp
MSDCKAIIAMENKRLRGYVTEKIVDAFRTGAIPVYWGDMEFVESVFNPEA
YFDVAKYARMEDAADALAALLTDDRALRSKQHQPVLQPGGYRFFDW
back to top

mRNA from alignment at S-firma_F_contig10096:855..1166-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10096.174.1 ID=mRNA_S-firma_F_contig10096.174.1|Name=mRNA_S-firma_F_contig10096.174.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=312bp|location=Sequence derived from alignment at S-firma_F_contig10096:855..1166- (Sphaerotrichia firma ET2_F female)
TACAAGGACTCATGGGTTGACCTCATGAGCGATTGCAAGGCCATTATTGC CATGGAGAACAAGCGGCTACGGGGGTACGTGACGGAGAAAATAGTGGACG CGTTCCGCACGGGTGCCATCCCCGTGTACTGGGGTGACATGGAGTTCGTG GAGTCCGTGTTCAACCCGGAGGCGTACTTTGACGTGGCCAAGTACGCCCG GATGGAAGACGCGGCGGATGCGCTGGCGGCCCTCCTCACCGACGACCGCG CCCTGCGCAGCAAGCAGCACCAGCCCGTTTTGCAGCCTGGTGGCTACCGG TTCTTTGATTGG
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig10096:855..1166-

>mRNA_S-firma_F_contig10096.174.1 ID=mRNA_S-firma_F_contig10096.174.1|Name=mRNA_S-firma_F_contig10096.174.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=576bp|location=Sequence derived from alignment at S-firma_F_contig10096:855..1166- (Sphaerotrichia firma ET2_F female)
ATGAGCGATTGCAAGGCCATTATTGCCATGGAGAACAAGCGGCTACGGGG
GTACGTGACGGAGAAAATAGTGGACGCGTTCCGCACGGGTGCCATCCCCG
TGTACTGGGGTGACATGGAGTTCGTGGAGTCCGTGTTCAACCCGGAGGCG
TACTTTGACGTGGCCAAGTACGCCCGGATGGAAGACGCGGCGGATGCGCT
GGCGGCCCTCCTCACCGACGACCGCGCCCTGCGCAGCAAGCAGCACCAGC
CCGTTTTGCAGCCTGGTGGCTACCGGTTCTTTGATTGGATGAGCGATTGC
AAGGCCATTATTGCCATGGAGAACAAGCGGCTACGGGGGTACGTGACGGA
GAAAATAGTGGACGCGTTCCGCACGGGTGCCATCCCCGTGTACTGGGGTG
ACATGGAGTTCGTGGAGTCCGTGTTCAACCCGGAGGCGTACTTTGACGTG
GCCAAGTACGCCCGGATGGAAGACGCGGCGGATGCGCTGGCGGCCCTCCT
CACCGACGACCGCGCCCTGCGCAGCAAGCAGCACCAGCCCGTTTTGCAGC
CTGGTGGCTACCGGTTCTTTGATTGG
back to top