mRNA_S-firma_F_contig10096.173.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10096.173.1
Unique NamemRNA_S-firma_F_contig10096.173.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10096.173.1 vs. uniprot
Match: A0A3D2GXG9_9PROT (Uncharacterized protein n=1 Tax=Holosporales bacterium TaxID=2053559 RepID=A0A3D2GXG9_9PROT)

HSP 1 Score: 101 bits (251), Expect = 4.880e-24
Identity = 44/111 (39.64%), Postives = 71/111 (63.96%), Query Frame = 1
Query:    1 RKFKLGYINSHCVPVREDFFALMKERLGEERVIARGKCSSMPETRAGGEFGFGWVGLMSDCQSIMAMENSQVPGYATEKLLDAFRAGSVPVYWGDSEFIRTVFNPKAFIDV 333
            R  ++ YI S C P RE  F  +++RLG ++ I  G+CS+ P  +A G +G     L+ D   ++A EN    GY TEK+++A++ G++P+YWGD++ +R  FNP +F+DV
Sbjct:   49 RSHQVAYIASDCTPEREGIFHALRQRLGGDQAIGMGQCSTTPGHKAPGGYG-DLDALLKDYNFVIAAENRDYKGYVTEKIINAYKVGAIPIYWGDADTVREFFNPDSFMDV 158          
BLAST of mRNA_S-firma_F_contig10096.173.1 vs. uniprot
Match: A0A1F2Z6L5_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium RIFCSPHIGHO2_01_FULL_41_14 TaxID=1797217 RepID=A0A1F2Z6L5_9PROT)

HSP 1 Score: 101 bits (251), Expect = 3.830e-23
Identity = 44/111 (39.64%), Postives = 71/111 (63.96%), Query Frame = 1
Query:    1 RKFKLGYINSHCVPVREDFFALMKERLGEERVIARGKCSSMPETRAGGEFGFGWVGLMSDCQSIMAMENSQVPGYATEKLLDAFRAGSVPVYWGDSEFIRTVFNPKAFIDV 333
            R  ++ YI S C P RE  F  +++RLG ++ I  G+CS+ P  +A G +G     L+ D   ++A EN    GY TEK+++A++ G++P+YWGD++ +R  FNP +F+DV
Sbjct:  181 RSHQVAYIASDCTPEREGIFHALRQRLGGDQAIGMGQCSTTPGHKAPGGYG-DLDALLKDYNFVIAAENRDYKGYVTEKIINAYKVGAIPIYWGDADTVREFFNPDSFMDV 290          
BLAST of mRNA_S-firma_F_contig10096.173.1 vs. uniprot
Match: A0A2E3BZ69_9PROT (Uncharacterized protein n=1 Tax=Magnetococcales bacterium TaxID=2026759 RepID=A0A2E3BZ69_9PROT)

HSP 1 Score: 86.7 bits (213), Expect = 4.040e-18
Identity = 42/114 (36.84%), Postives = 70/114 (61.40%), Query Frame = 1
Query:    1 RKFKLGYINSHCVPVREDFFALMKERLGEERVIARGKCSSMPETRAGGEFGFGW---VGLMSDCQSIMAMENSQVPGYATEKLLDAFRAGSVPVYWGDSEFIRTVFNPKAFIDV 333
            R +   Y  S+ +P+RE  F L+KE+  +  V + G+C++  E     + G  W        D + ++AMEN  + GY TEK+L+A+ AG++P+YWG+S +++ +FNP +FIDV
Sbjct:  122 RPYLAAYCYSNPIPLREKLFKLLKEK--DNTVHSLGRCNTTKEFN---KIGTKWRDNPDYFKDYRFVIAMENKNMNGYVTEKILNAYIAGAIPIYWGNSSYVKEIFNPLSFIDV 230          
BLAST of mRNA_S-firma_F_contig10096.173.1 vs. uniprot
Match: A0A450SQ36_9GAMM (Glycosyltransferase family 10 (Fucosyltransferase) C-term n=1 Tax=Candidatus Kentron sp. DK TaxID=2126562 RepID=A0A450SQ36_9GAMM)

HSP 1 Score: 77.0 bits (188), Expect = 1.620e-14
Identity = 42/114 (36.84%), Postives = 63/114 (55.26%), Query Frame = 1
Query:    1 RKFKLGYINSHCVPVREDFFALMKERLGEERVIARGKC---SSMPETRAGGEFGFGWVGLMSDCQSIMAMENSQVPGYATEKLLDAFRAGSVPVYWGDSEFIRTVFNPKAFIDV 333
            R + L Y NS+CVP RE  F L+ ER       + G C     + + +  G++G   +   S+ + +MAMEN  VPGY TEK+++AF  G+    WGD+  ++  FN  AF+ V
Sbjct:  122 RNYFLAYCNSNCVPEREYMFDLLVERDRTGTCHSLGDCCGSKGVKKRKIAGDWGPKLIKAYSNYKFVMAMENRVVPGYITEKIINAFHGGAXXXXWGDN-IVKVFFNTDAFVHV 234          
BLAST of mRNA_S-firma_F_contig10096.173.1 vs. uniprot
Match: UPI0018CD375B (glycosyltransferase family 10 n=1 Tax=Gramella bathymodioli TaxID=2541727 RepID=UPI0018CD375B)

HSP 1 Score: 75.9 bits (185), Expect = 5.350e-14
Identity = 38/108 (35.19%), Postives = 61/108 (56.48%), Query Frame = 1
Query:   19 YINSHCVPVREDFFALMKERLGEERVIARGKCSSMPETRAGGEFGFGW----VGLMSDCQSIMAMENSQVPGYATEKLLDAFRAGSVPVYWGDSEFIRTVFNPKAFID 330
            Y N+   P+R+ FF  + E    +++ + GK  +      GG +   W    +   S C+  +A ENS  PGY TEK++ AF AG++P+YWG+ + +   FNP+AFI+
Sbjct:  123 YSNNQANPIRDQFFHSLNEY---KKISSPGKHLNNVNIEIGGRYASDWMFSKIDFQSKCKFTIAFENSSSPGYTTEKIMHAFLAGTIPIYWGNPK-VNLDFNPEAFIN 226          
BLAST of mRNA_S-firma_F_contig10096.173.1 vs. uniprot
Match: UPI001F4D61DA (glycosyltransferase family 10 n=1 Tax=Gramella sp. GC03-9 TaxID=2920386 RepID=UPI001F4D61DA)

HSP 1 Score: 73.9 bits (180), Expect = 2.750e-13
Identity = 40/109 (36.70%), Postives = 59/109 (54.13%), Query Frame = 1
Query:   19 YINSHCVPVREDFFALMKERLGEERVIARGKCSSMPETRAGGEFGFGW----VGLMSDCQSIMAMENSQVPGYATEKLLDAFRAGSVPVYWGDSEFIRTVFNPKAFIDV 333
            Y N    PVR+ FF  + +    + + + G   +  +   GG F   W    +   S C+  +A ENS  PGY TEK++ AF AGS+P+YWGD + +   FN +AFI+V
Sbjct:  124 YSNHQANPVRDQFFQALNDY---KPITSPGTHLNNSKISIGGRFSENWMFDKIEFQSKCKFTIAFENSSSPGYTTEKIMHAFVAGSIPIYWGDPK-VTADFNKEAFINV 228          
BLAST of mRNA_S-firma_F_contig10096.173.1 vs. uniprot
Match: K3X706_GLOUD (Fucosyltransferase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X706_GLOUD)

HSP 1 Score: 73.6 bits (179), Expect = 6.500e-13
Identity = 53/121 (43.80%), Postives = 67/121 (55.37%), Query Frame = 1
Query:    1 RKFKLGYINSHCV-PVREDFFALMKERLGEERVIARGKC---SSMP-ETRAGGEFGFGW----VGLMSDCQSIMAMENSQVPGYATEKLLDAFRAGSVPVYWGDSEFIRTVFNPKAFIDVG 336
            RKF   Y+ + C  P RE  F L+      E V A G C   S  P E R  G     +    V L S  + ++A EN Q PGY TEKL++AF AGSVP+Y+G SE +  VFNP++FID G
Sbjct:  784 RKF-CAYMYARCDRPQREYMFDLLSTM---EPVDALGACQGSSRAPNEKRWTGRSSIWYNDDAVRLYSQYKFVIAFENGQRPGYVTEKLVNAFLAGSVPIYFGHSESVAQVFNPESFIDCG 900          
BLAST of mRNA_S-firma_F_contig10096.173.1 vs. uniprot
Match: H3H520_PHYRM (Fucosyltransferase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H520_PHYRM)

HSP 1 Score: 72.0 bits (175), Expect = 9.690e-13
Identity = 45/116 (38.79%), Postives = 66/116 (56.90%), Query Frame = 1
Query:   16 GYINSHCVPVREDFFALMKERLGEERVI-ARGKC--SSMP--ETRAGGEFGFGW----VGLMSDCQSIMAMENSQVPGYATEKLLDAFRAGSVPVYWGDSEFIRTVFNPKAFIDVG 336
             Y+ +HC     +   LM + L   R + A GKC  SS P  +T+        +    V   +  + ++A EN++  GY TEKL++AF AGSVPVYWGDS+ +  +FNP++FID G
Sbjct:  105 AYLYAHCDRSDRE---LMYDALNALRPVDALGKCAGSSRPPDQTKMASRLAIFYNDDAVRRYAPYKFVLAFENTRAAGYVTEKLVNAFLAGSVPVYWGDSKTVSELFNPESFIDCG 217          
BLAST of mRNA_S-firma_F_contig10096.173.1 vs. uniprot
Match: A0A225WD45_9STRA (Fucosyltransferase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WD45_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.170e-12
Identity = 45/116 (38.79%), Postives = 60/116 (51.72%), Query Frame = 1
Query:   16 GYINSHCV-PVREDFFALMKERLGEERVIARGKCSSM---PETRAGGEFGFGW-----VGLMSDCQSIMAMENSQVPGYATEKLLDAFRAGSVPVYWGDSEFIRTVFNPKAFIDVG 336
             Y+ + C  P RE  F L+      E V A G C+     P++       F W     V L    + ++A ENS  PGY TEKL++ F AGS+P+YWG+S   R +FNP  FID G
Sbjct:  457 AYLYARCDRPYREYMFDLLNAM---EPVDALGVCAGSTRAPDSSFKASRYFKWFNDEAVTLYQGYKFVVAFENSAEPGYVTEKLVNPFLAGSIPIYWGNSTTARQIFNPDTFIDCG 569          
BLAST of mRNA_S-firma_F_contig10096.173.1 vs. uniprot
Match: A0A2P4XND5_9STRA (Fucosyltransferase n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XND5_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.650e-12
Identity = 43/111 (38.74%), Postives = 60/111 (54.05%), Query Frame = 1
Query:   16 GYINSHCV-PVREDFFALMKERLGEERVIARGKC---SSMPETRAGGEFGFGWVGLMSDCQSIMAMENSQVPGYATEKLLDAFRAGSVPVYWGDSEFIRTVFNPKAFIDVG 336
             Y+ + C   +RE  F L+      E V A G C   S  P+        F W    ++ + ++A ENS  PGY TEKLL+ F AGS+P+YWG+S  +  +FNP +FID G
Sbjct:  739 AYLYARCDRSLREYMFDLLNAM---EPVDALGICAGSSRPPDNSYRASRYFKWFNDEANYKFVIAFENSAEPGYVTEKLLNPFLAGSIPIYWGNSTTVSHLFNPDSFIDCG 846          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10096.173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D2GXG9_9PROT4.880e-2439.64Uncharacterized protein n=1 Tax=Holosporales bacte... [more]
A0A1F2Z6L5_9PROT3.830e-2339.64Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A2E3BZ69_9PROT4.040e-1836.84Uncharacterized protein n=1 Tax=Magnetococcales ba... [more]
A0A450SQ36_9GAMM1.620e-1436.84Glycosyltransferase family 10 (Fucosyltransferase)... [more]
UPI0018CD375B5.350e-1435.19glycosyltransferase family 10 n=1 Tax=Gramella bat... [more]
UPI001F4D61DA2.750e-1336.70glycosyltransferase family 10 n=1 Tax=Gramella sp.... [more]
K3X706_GLOUD6.500e-1343.80Fucosyltransferase n=1 Tax=Globisporangium ultimum... [more]
H3H520_PHYRM9.690e-1338.79Fucosyltransferase n=1 Tax=Phytophthora ramorum Ta... [more]
A0A225WD45_9STRA1.170e-1238.79Fucosyltransferase n=1 Tax=Phytophthora megakarya ... [more]
A0A2P4XND5_9STRA1.650e-1238.74Fucosyltransferase n=2 Tax=Phytophthora palmivora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10096contigS-firma_F_contig10096:56..391 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog865937.Gilli_0726
PFAMsGlyco_transf_10
Max annot lvl976|Bacteroidetes
KEGG koko:K20151
Evalue7.18e-15
EggNOG OGs28IN0@1|root,2Z8NG@2|Bacteria,4NNZ4@976|Bacteroidetes,1HXHT@117743|Flavobacteriia,2P7EX@244698|Gillisia
EC2.4.1.152,2.4.1.65
DescriptionGlycosyltransferase family 10 (fucosyltransferase) C-term
COG categoryS
CAZyGT10
BRITEko00000,ko01000,ko01003
Hectar predicted targeting categoryother localisation
Exons1
Model size336
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815535.6046138-CDS-S-firma_F_contig10096:55..3911622815535.6046138-CDS-S-firma_F_contig10096:55..391Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10096 56..391 +
1696949397.467824-CDS-S-firma_F_contig10096:55..3911696949397.467824-CDS-S-firma_F_contig10096:55..391Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10096 56..391 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10096.173.1prot_S-firma_F_contig10096.173.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10096 56..391 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10096.173.1

>prot_S-firma_F_contig10096.173.1 ID=prot_S-firma_F_contig10096.173.1|Name=mRNA_S-firma_F_contig10096.173.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=112bp
RKFKLGYINSHCVPVREDFFALMKERLGEERVIARGKCSSMPETRAGGEF
GFGWVGLMSDCQSIMAMENSQVPGYATEKLLDAFRAGSVPVYWGDSEFIR
TVFNPKAFIDVG
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mRNA from alignment at S-firma_F_contig10096:56..391+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10096.173.1 ID=mRNA_S-firma_F_contig10096.173.1|Name=mRNA_S-firma_F_contig10096.173.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=336bp|location=Sequence derived from alignment at S-firma_F_contig10096:56..391+ (Sphaerotrichia firma ET2_F female)
CGCAAGTTCAAGTTGGGGTACATCAACTCGCACTGCGTCCCCGTGCGGGA GGACTTTTTCGCCCTCATGAAGGAGCGGCTCGGGGAGGAAAGGGTCATTG CCAGGGGCAAGTGCTCGTCAATGCCGGAGACGCGGGCGGGGGGCGAGTTT GGCTTTGGCTGGGTGGGCCTCATGAGCGACTGCCAGTCCATCATGGCCAT GGAAAACAGCCAGGTGCCAGGCTACGCGACGGAGAAGCTGCTGGACGCCT TCCGGGCGGGGTCCGTGCCCGTGTACTGGGGTGACTCCGAGTTCATCCGG ACTGTGTTCAACCCCAAGGCCTTCATTGACGTCGGC
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Coding sequence (CDS) from alignment at S-firma_F_contig10096:56..391+

>mRNA_S-firma_F_contig10096.173.1 ID=mRNA_S-firma_F_contig10096.173.1|Name=mRNA_S-firma_F_contig10096.173.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=672bp|location=Sequence derived from alignment at S-firma_F_contig10096:56..391+ (Sphaerotrichia firma ET2_F female)
CGCAAGTTCAAGTTGGGGTACATCAACTCGCACTGCGTCCCCGTGCGGGA
GGACTTTTTCGCCCTCATGAAGGAGCGGCTCGGGGAGGAAAGGGTCATTG
CCAGGGGCAAGTGCTCGTCAATGCCGGAGACGCGGGCGGGGGGCGAGTTT
GGCTTTGGCTGGGTGGGCCTCATGAGCGACTGCCAGTCCATCATGGCCAT
GGAAAACAGCCAGGTGCCAGGCTACGCGACGGAGAAGCTGCTGGACGCCT
TCCGGGCGGGGTCCGTGCCCGTGTACTGGGGTGACTCCGAGTTCATCCGG
ACTGTGTTCAACCCCAAGGCCTTCATTGACGTCGGCCGCAAGTTCAAGTT
GGGGTACATCAACTCGCACTGCGTCCCCGTGCGGGAGGACTTTTTCGCCC
TCATGAAGGAGCGGCTCGGGGAGGAAAGGGTCATTGCCAGGGGCAAGTGC
TCGTCAATGCCGGAGACGCGGGCGGGGGGCGAGTTTGGCTTTGGCTGGGT
GGGCCTCATGAGCGACTGCCAGTCCATCATGGCCATGGAAAACAGCCAGG
TGCCAGGCTACGCGACGGAGAAGCTGCTGGACGCCTTCCGGGCGGGGTCC
GTGCCCGTGTACTGGGGTGACTCCGAGTTCATCCGGACTGTGTTCAACCC
CAAGGCCTTCATTGACGTCGGC
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