mRNA_S-firma_F_contig10096.173.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10096.173.1 vs. uniprot
Match: A0A3D2GXG9_9PROT (Uncharacterized protein n=1 Tax=Holosporales bacterium TaxID=2053559 RepID=A0A3D2GXG9_9PROT) HSP 1 Score: 101 bits (251), Expect = 4.880e-24 Identity = 44/111 (39.64%), Postives = 71/111 (63.96%), Query Frame = 1
Query: 1 RKFKLGYINSHCVPVREDFFALMKERLGEERVIARGKCSSMPETRAGGEFGFGWVGLMSDCQSIMAMENSQVPGYATEKLLDAFRAGSVPVYWGDSEFIRTVFNPKAFIDV 333
R ++ YI S C P RE F +++RLG ++ I G+CS+ P +A G +G L+ D ++A EN GY TEK+++A++ G++P+YWGD++ +R FNP +F+DV
Sbjct: 49 RSHQVAYIASDCTPEREGIFHALRQRLGGDQAIGMGQCSTTPGHKAPGGYG-DLDALLKDYNFVIAAENRDYKGYVTEKIINAYKVGAIPIYWGDADTVREFFNPDSFMDV 158
BLAST of mRNA_S-firma_F_contig10096.173.1 vs. uniprot
Match: A0A1F2Z6L5_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium RIFCSPHIGHO2_01_FULL_41_14 TaxID=1797217 RepID=A0A1F2Z6L5_9PROT) HSP 1 Score: 101 bits (251), Expect = 3.830e-23 Identity = 44/111 (39.64%), Postives = 71/111 (63.96%), Query Frame = 1
Query: 1 RKFKLGYINSHCVPVREDFFALMKERLGEERVIARGKCSSMPETRAGGEFGFGWVGLMSDCQSIMAMENSQVPGYATEKLLDAFRAGSVPVYWGDSEFIRTVFNPKAFIDV 333
R ++ YI S C P RE F +++RLG ++ I G+CS+ P +A G +G L+ D ++A EN GY TEK+++A++ G++P+YWGD++ +R FNP +F+DV
Sbjct: 181 RSHQVAYIASDCTPEREGIFHALRQRLGGDQAIGMGQCSTTPGHKAPGGYG-DLDALLKDYNFVIAAENRDYKGYVTEKIINAYKVGAIPIYWGDADTVREFFNPDSFMDV 290
BLAST of mRNA_S-firma_F_contig10096.173.1 vs. uniprot
Match: A0A2E3BZ69_9PROT (Uncharacterized protein n=1 Tax=Magnetococcales bacterium TaxID=2026759 RepID=A0A2E3BZ69_9PROT) HSP 1 Score: 86.7 bits (213), Expect = 4.040e-18 Identity = 42/114 (36.84%), Postives = 70/114 (61.40%), Query Frame = 1
Query: 1 RKFKLGYINSHCVPVREDFFALMKERLGEERVIARGKCSSMPETRAGGEFGFGW---VGLMSDCQSIMAMENSQVPGYATEKLLDAFRAGSVPVYWGDSEFIRTVFNPKAFIDV 333
R + Y S+ +P+RE F L+KE+ + V + G+C++ E + G W D + ++AMEN + GY TEK+L+A+ AG++P+YWG+S +++ +FNP +FIDV
Sbjct: 122 RPYLAAYCYSNPIPLREKLFKLLKEK--DNTVHSLGRCNTTKEFN---KIGTKWRDNPDYFKDYRFVIAMENKNMNGYVTEKILNAYIAGAIPIYWGNSSYVKEIFNPLSFIDV 230
BLAST of mRNA_S-firma_F_contig10096.173.1 vs. uniprot
Match: A0A450SQ36_9GAMM (Glycosyltransferase family 10 (Fucosyltransferase) C-term n=1 Tax=Candidatus Kentron sp. DK TaxID=2126562 RepID=A0A450SQ36_9GAMM) HSP 1 Score: 77.0 bits (188), Expect = 1.620e-14 Identity = 42/114 (36.84%), Postives = 63/114 (55.26%), Query Frame = 1
Query: 1 RKFKLGYINSHCVPVREDFFALMKERLGEERVIARGKC---SSMPETRAGGEFGFGWVGLMSDCQSIMAMENSQVPGYATEKLLDAFRAGSVPVYWGDSEFIRTVFNPKAFIDV 333
R + L Y NS+CVP RE F L+ ER + G C + + + G++G + S+ + +MAMEN VPGY TEK+++AF G+ WGD+ ++ FN AF+ V
Sbjct: 122 RNYFLAYCNSNCVPEREYMFDLLVERDRTGTCHSLGDCCGSKGVKKRKIAGDWGPKLIKAYSNYKFVMAMENRVVPGYITEKIINAFHGGAXXXXWGDN-IVKVFFNTDAFVHV 234
BLAST of mRNA_S-firma_F_contig10096.173.1 vs. uniprot
Match: UPI0018CD375B (glycosyltransferase family 10 n=1 Tax=Gramella bathymodioli TaxID=2541727 RepID=UPI0018CD375B) HSP 1 Score: 75.9 bits (185), Expect = 5.350e-14 Identity = 38/108 (35.19%), Postives = 61/108 (56.48%), Query Frame = 1
Query: 19 YINSHCVPVREDFFALMKERLGEERVIARGKCSSMPETRAGGEFGFGW----VGLMSDCQSIMAMENSQVPGYATEKLLDAFRAGSVPVYWGDSEFIRTVFNPKAFID 330
Y N+ P+R+ FF + E +++ + GK + GG + W + S C+ +A ENS PGY TEK++ AF AG++P+YWG+ + + FNP+AFI+
Sbjct: 123 YSNNQANPIRDQFFHSLNEY---KKISSPGKHLNNVNIEIGGRYASDWMFSKIDFQSKCKFTIAFENSSSPGYTTEKIMHAFLAGTIPIYWGNPK-VNLDFNPEAFIN 226
BLAST of mRNA_S-firma_F_contig10096.173.1 vs. uniprot
Match: UPI001F4D61DA (glycosyltransferase family 10 n=1 Tax=Gramella sp. GC03-9 TaxID=2920386 RepID=UPI001F4D61DA) HSP 1 Score: 73.9 bits (180), Expect = 2.750e-13 Identity = 40/109 (36.70%), Postives = 59/109 (54.13%), Query Frame = 1
Query: 19 YINSHCVPVREDFFALMKERLGEERVIARGKCSSMPETRAGGEFGFGW----VGLMSDCQSIMAMENSQVPGYATEKLLDAFRAGSVPVYWGDSEFIRTVFNPKAFIDV 333
Y N PVR+ FF + + + + + G + + GG F W + S C+ +A ENS PGY TEK++ AF AGS+P+YWGD + + FN +AFI+V
Sbjct: 124 YSNHQANPVRDQFFQALNDY---KPITSPGTHLNNSKISIGGRFSENWMFDKIEFQSKCKFTIAFENSSSPGYTTEKIMHAFVAGSIPIYWGDPK-VTADFNKEAFINV 228
BLAST of mRNA_S-firma_F_contig10096.173.1 vs. uniprot
Match: K3X706_GLOUD (Fucosyltransferase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X706_GLOUD) HSP 1 Score: 73.6 bits (179), Expect = 6.500e-13 Identity = 53/121 (43.80%), Postives = 67/121 (55.37%), Query Frame = 1
Query: 1 RKFKLGYINSHCV-PVREDFFALMKERLGEERVIARGKC---SSMP-ETRAGGEFGFGW----VGLMSDCQSIMAMENSQVPGYATEKLLDAFRAGSVPVYWGDSEFIRTVFNPKAFIDVG 336
RKF Y+ + C P RE F L+ E V A G C S P E R G + V L S + ++A EN Q PGY TEKL++AF AGSVP+Y+G SE + VFNP++FID G
Sbjct: 784 RKF-CAYMYARCDRPQREYMFDLLSTM---EPVDALGACQGSSRAPNEKRWTGRSSIWYNDDAVRLYSQYKFVIAFENGQRPGYVTEKLVNAFLAGSVPIYFGHSESVAQVFNPESFIDCG 900
BLAST of mRNA_S-firma_F_contig10096.173.1 vs. uniprot
Match: H3H520_PHYRM (Fucosyltransferase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H520_PHYRM) HSP 1 Score: 72.0 bits (175), Expect = 9.690e-13 Identity = 45/116 (38.79%), Postives = 66/116 (56.90%), Query Frame = 1
Query: 16 GYINSHCVPVREDFFALMKERLGEERVI-ARGKC--SSMP--ETRAGGEFGFGW----VGLMSDCQSIMAMENSQVPGYATEKLLDAFRAGSVPVYWGDSEFIRTVFNPKAFIDVG 336
Y+ +HC + LM + L R + A GKC SS P +T+ + V + + ++A EN++ GY TEKL++AF AGSVPVYWGDS+ + +FNP++FID G
Sbjct: 105 AYLYAHCDRSDRE---LMYDALNALRPVDALGKCAGSSRPPDQTKMASRLAIFYNDDAVRRYAPYKFVLAFENTRAAGYVTEKLVNAFLAGSVPVYWGDSKTVSELFNPESFIDCG 217
BLAST of mRNA_S-firma_F_contig10096.173.1 vs. uniprot
Match: A0A225WD45_9STRA (Fucosyltransferase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WD45_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 1.170e-12 Identity = 45/116 (38.79%), Postives = 60/116 (51.72%), Query Frame = 1
Query: 16 GYINSHCV-PVREDFFALMKERLGEERVIARGKCSSM---PETRAGGEFGFGW-----VGLMSDCQSIMAMENSQVPGYATEKLLDAFRAGSVPVYWGDSEFIRTVFNPKAFIDVG 336
Y+ + C P RE F L+ E V A G C+ P++ F W V L + ++A ENS PGY TEKL++ F AGS+P+YWG+S R +FNP FID G
Sbjct: 457 AYLYARCDRPYREYMFDLLNAM---EPVDALGVCAGSTRAPDSSFKASRYFKWFNDEAVTLYQGYKFVVAFENSAEPGYVTEKLVNPFLAGSIPIYWGNSTTARQIFNPDTFIDCG 569
BLAST of mRNA_S-firma_F_contig10096.173.1 vs. uniprot
Match: A0A2P4XND5_9STRA (Fucosyltransferase n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XND5_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 1.650e-12 Identity = 43/111 (38.74%), Postives = 60/111 (54.05%), Query Frame = 1
Query: 16 GYINSHCV-PVREDFFALMKERLGEERVIARGKC---SSMPETRAGGEFGFGWVGLMSDCQSIMAMENSQVPGYATEKLLDAFRAGSVPVYWGDSEFIRTVFNPKAFIDVG 336
Y+ + C +RE F L+ E V A G C S P+ F W ++ + ++A ENS PGY TEKLL+ F AGS+P+YWG+S + +FNP +FID G
Sbjct: 739 AYLYARCDRSLREYMFDLLNAM---EPVDALGICAGSSRPPDNSYRASRYFKWFNDEANYKFVIAFENSAEPGYVTEKLLNPFLAGSIPIYWGNSTTVSHLFNPDSFIDCG 846 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10096.173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10096.173.1 >prot_S-firma_F_contig10096.173.1 ID=prot_S-firma_F_contig10096.173.1|Name=mRNA_S-firma_F_contig10096.173.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=112bp RKFKLGYINSHCVPVREDFFALMKERLGEERVIARGKCSSMPETRAGGEFback to top mRNA from alignment at S-firma_F_contig10096:56..391+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10096.173.1 ID=mRNA_S-firma_F_contig10096.173.1|Name=mRNA_S-firma_F_contig10096.173.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=336bp|location=Sequence derived from alignment at S-firma_F_contig10096:56..391+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10096:56..391+ >mRNA_S-firma_F_contig10096.173.1 ID=mRNA_S-firma_F_contig10096.173.1|Name=mRNA_S-firma_F_contig10096.173.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=672bp|location=Sequence derived from alignment at S-firma_F_contig10096:56..391+ (Sphaerotrichia firma ET2_F female)back to top |