mRNA_S-firma_F_contig10093.170.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10093.170.1
Unique NamemRNA_S-firma_F_contig10093.170.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10093.170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10093contigS-firma_F_contig10093:686..1362 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size677
Cds size378
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10093.170.1prot_S-firma_F_contig10093.170.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10093 894..1271 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815535.3002427-UTR-S-firma_F_contig10093:685..8931622815535.3002427-UTR-S-firma_F_contig10093:685..893Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10093 686..893 +
1696949397.1648276-UTR-S-firma_F_contig10093:685..8931696949397.1648276-UTR-S-firma_F_contig10093:685..893Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10093 686..893 +
1622815535.3284533-UTR-S-firma_F_contig10093:1271..13621622815535.3284533-UTR-S-firma_F_contig10093:1271..1362Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10093 1272..1362 +
1696949397.2348268-UTR-S-firma_F_contig10093:1271..13621696949397.2348268-UTR-S-firma_F_contig10093:1271..1362Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10093 1272..1362 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815535.3172066-CDS-S-firma_F_contig10093:893..12711622815535.3172066-CDS-S-firma_F_contig10093:893..1271Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10093 894..1271 +
1696949397.1832404-CDS-S-firma_F_contig10093:893..12711696949397.1832404-CDS-S-firma_F_contig10093:893..1271Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10093 894..1271 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10093.170.1

>prot_S-firma_F_contig10093.170.1 ID=prot_S-firma_F_contig10093.170.1|Name=mRNA_S-firma_F_contig10093.170.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=126bp
MLYSRSGIETWRVRQYQPQEQVSLRPPSWSPRQNCGLTLSHFTPIDLPTA
TSWIIADMQTRTICEECVPNVDLHRPPLHAAVVVLQRYNTQQPQHTEGRL
CLPSVFGMIVHIQGCTAGKFLRNKS*
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mRNA from alignment at S-firma_F_contig10093:686..1362+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10093.170.1 ID=mRNA_S-firma_F_contig10093.170.1|Name=mRNA_S-firma_F_contig10093.170.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=677bp|location=Sequence derived from alignment at S-firma_F_contig10093:686..1362+ (Sphaerotrichia firma ET2_F female)
TCAAGGCCAAACAAGCCAATACAAAGCCCACGGTACAATATACGGCAAAG
CAGCGAGTCCTCCGCCTCGTGCGGGAAAGGGGGCGGGTCGAACGCAGCGG
CGCTACTTTCATGTTCGTTACTTTCTACTAGTTCGTGTCGAGCGATCGAA
GTAATGCTAATGGTGCGCAATCTCGAAAGACACGTCGGACAGGATCCTGC
ACGCGCACATGTTGTACAGCAGGTCCGGGATCGAGACTTGGCGTGTAAGG
CAGTACCAACCGCAGGAGCAGGTAAGCTTACGACCGCCCTCCTGGTCACC
CCGCCAAAACTGCGGCTTGACACTTTCACACTTCACACCCATCGACTTAC
CAACAGCGACGTCGTGGATCATCGCCGACATGCAAACTCGGACTATTTGC
GAGGAATGTGTGCCAAACGTTGATCTACATCGACCTCCTCTCCATGCTGC
CGTAGTAGTGCTGCAGCGGTACAATACACAGCAGCCGCAGCACACAGAGG
GTCGGCTCTGCCTCCCTTCAGTGTTCGGGATGATAGTTCATATTCAGGGC
TGCACAGCAGGGAAATTCCTTCGAAACAAAAGCTAGACCGTTCATCACTA
GCAACTGACCTCAGAATCGGCCATGCTGAGCTTGCAAGCGGGAAGTCGGA
AGTCCACTTCAGTGCCTTACAATGATA
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Coding sequence (CDS) from alignment at S-firma_F_contig10093:686..1362+

>mRNA_S-firma_F_contig10093.170.1 ID=mRNA_S-firma_F_contig10093.170.1|Name=mRNA_S-firma_F_contig10093.170.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=756bp|location=Sequence derived from alignment at S-firma_F_contig10093:686..1362+ (Sphaerotrichia firma ET2_F female)
ATGTTGTACAGCAGGTCCGGGATCGAGACTTGGCGTGTAAGGCAGTACCA
ACCGCAGGAGCAGGTAAGCTTACGACCGCCCTCCTGGTCACCCCGCCAAA
ACTGCGGCTTGACACTTTCACACTTCACACCCATCGACTTACCAACAGCG
ACGTCGTGGATCATCGCCGACATGCAAACTCGGACTATTTGCGAGGAATG
TGTGCCAAACGTTGATCTACATCGACCTCCTCTCCATGCTGCCGTAGTAG
TGCTGCAGCGGTACAATACACAGCAGCCGCAGCACACAGAGGGTCGGCTC
TGCCTCCCTTCAGTGTTCGGGATGATAGTTCATATTCAGGGCTGCACAGC
AGGGAAATTCCTTCGAAACAAAAGCTAGATGTTGTACAGCAGGTCCGGGA
TCGAGACTTGGCGTGTAAGGCAGTACCAACCGCAGGAGCAGGTAAGCTTA
CGACCGCCCTCCTGGTCACCCCGCCAAAACTGCGGCTTGACACTTTCACA
CTTCACACCCATCGACTTACCAACAGCGACGTCGTGGATCATCGCCGACA
TGCAAACTCGGACTATTTGCGAGGAATGTGTGCCAAACGTTGATCTACAT
CGACCTCCTCTCCATGCTGCCGTAGTAGTGCTGCAGCGGTACAATACACA
GCAGCCGCAGCACACAGAGGGTCGGCTCTGCCTCCCTTCAGTGTTCGGGA
TGATAGTTCATATTCAGGGCTGCACAGCAGGGAAATTCCTTCGAAACAAA
AGCTAG
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