mRNA_S-firma_F_contig10086.161.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10086.161.1
Unique NamemRNA_S-firma_F_contig10086.161.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig10086.161.1 vs. uniprot
Match: A0A5A8CYL0_CAFRO (Hypothetical protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CYL0_CAFRO)

HSP 1 Score: 89.4 bits (220), Expect = 2.240e-16
Identity = 57/172 (33.14%), Postives = 93/172 (54.07%), Query Frame = 2 
Query:  755 LNMKPMPGMPGSGINVASPASLPDTLALGTTYASDHSFNNDVNALLGEVDKSSGEARDIRTRLVEKENFMAALNTRKGIIDSDITADKDTLNSVMAHIKALSARVERLKNAAVQRTLAAQEHQYSQAAQSLTGEAENLKAVQKALKDKIKTLEKTNKPLLDEERAGMRASLE 1270
            L M+P+PG     I VA+P S+   L     Y + H++  D+ +L+ E+D S   AR +R +LV+K+NF+ ++  R+ ++  D+   K  L ++ AHI+A  ARVERLK    Q  L  Q+H    A + +     +++AV  AL  +++  +   K  L  E   MR SL+
Sbjct:   54 LVMEPLPGQGNQPIEVAAPTSVGGDLPDAARYGNLHAYTEDLKSLVKEMDDSEQNARSLRVKLVDKDNFLESMLKRERLLKIDLDQHKTQLAAMNAHIQATEARVERLKKERQQAELDYQKHSMDSATRHIATTINSVEAVSSALDSRLERTDARVKDALMRETEAMRRSLQ 225
[Close]
BLAST of mRNA_S-firma_F_contig10086.161.1 vs. uniprot
Match: A0A7S1CXG8_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CXG8_CYCTE)

HSP 1 Score: 69.3 bits (168), Expect = 1.450e-10
Identity = 46/118 (38.98%), Postives = 71/118 (60.17%), Query Frame = 2 
Query:  917 EARDIRTRLVEKENFMAALNTRKGIIDSDITADKDTLNSVMAHIKALSARVERLKNAAVQRTLAAQEHQYSQAAQSLTGEAENLKAVQKALKDKIKTLEKTNKPLLDEERAGMRASLE 1270
            +AR +R  +VEK+NF+  L  R+ ++  D+TA K TL ++ AHI+A+ AR+ RLK       +AAQ+ Q   A+  L  E  N++AV  AL+++I TL    K  L+ E   MR S++
Sbjct:    2 KARKLRMMIVEKDNFLEGLQKREKLLRVDMTAHKQTLGALGAHIQAVEARIGRLKEERQLADIAAQKLQMEAASGKLDVERTNIRAVASALENRIDTLGAGVKNNLETEIESMRRSVQ 119
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10086.161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A5A8CYL0_CAFRO2.240e-1633.14Hypothetical protein n=1 Tax=Cafeteria roenbergens... [more]
A0A7S1CXG8_CYCTE1.450e-1038.98Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10086contigS-firma_F_contig10086:117..2587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons5
Model size1365
Cds size1335
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815534.1528914-UTR-S-firma_F_contig10086:116..1181622815534.1528914-UTR-S-firma_F_contig10086:116..118Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10086 117..118 -
1696949395.9371336-UTR-S-firma_F_contig10086:116..1181696949395.9371336-UTR-S-firma_F_contig10086:116..118Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10086 117..118 -
1622815534.2158403-UTR-S-firma_F_contig10086:1652..16571622815534.2158403-UTR-S-firma_F_contig10086:1652..1657Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10086 1653..1657 -
1696949396.0703723-UTR-S-firma_F_contig10086:1652..16571696949396.0703723-UTR-S-firma_F_contig10086:1652..1657Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10086 1653..1657 -
1622815534.229484-UTR-S-firma_F_contig10086:2564..25871622815534.229484-UTR-S-firma_F_contig10086:2564..2587Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10086 2565..2587 -
1696949396.1075323-UTR-S-firma_F_contig10086:2564..25871696949396.1075323-UTR-S-firma_F_contig10086:2564..2587Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10086 2565..2587 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815534.1632934-CDS-S-firma_F_contig10086:118..5141622815534.1632934-CDS-S-firma_F_contig10086:118..514Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10086 119..514 -
1696949395.9453907-CDS-S-firma_F_contig10086:118..5141696949395.9453907-CDS-S-firma_F_contig10086:118..514Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10086 119..514 -
1622815534.1788034-CDS-S-firma_F_contig10086:585..6781622815534.1788034-CDS-S-firma_F_contig10086:585..678Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10086 586..678 -
1696949395.9800677-CDS-S-firma_F_contig10086:585..6781696949395.9800677-CDS-S-firma_F_contig10086:585..678Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10086 586..678 -
1622815534.191572-CDS-S-firma_F_contig10086:740..14651622815534.191572-CDS-S-firma_F_contig10086:740..1465Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10086 741..1465 -
1696949396.0248268-CDS-S-firma_F_contig10086:740..14651696949396.0248268-CDS-S-firma_F_contig10086:740..1465Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10086 741..1465 -
1622815534.2014627-CDS-S-firma_F_contig10086:1531..16521622815534.2014627-CDS-S-firma_F_contig10086:1531..1652Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10086 1532..1652 -
1696949396.044686-CDS-S-firma_F_contig10086:1531..16521696949396.044686-CDS-S-firma_F_contig10086:1531..1652Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10086 1532..1652 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10086.161.1prot_S-firma_F_contig10086.161.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10086 119..1652 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10086.161.1

>prot_S-firma_F_contig10086.161.1 ID=prot_S-firma_F_contig10086.161.1|Name=mRNA_S-firma_F_contig10086.161.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=445bp
MRLFVAIAALVAVVGAQTLVPQRMDTFSAPARFPSIAEGSGSGSAAIGSA
SGSGSALGSGSASGSGGSGSGSDVGSGSSPSVGSPIPPFKGNKDVVDNYV
TALQRDLNQDLADLHEKSLQIVRDATAALERVTAEKAEGGSGSGSLAGSA
SGSGSASGSASGSTSGSGSGSTSGSGSASGSASGSPSFIQLASTHLRGSG
SGSGSASASASGSASGSGSASGSASGSGSASGSGSDSPGPGMLNMKPMPG
MPGSGINVASPASLPDTLALGTTYASDHSFNNDVNALLGEVDKSSGEARD
IRTRLVEKENFMAALNTRKGIIDSDITADKDTLNSVMAHIKALSARVERL
KNAAVQRTLAAQEHQYSQAAQSLTGEAENLKAVQKALKDKIKTLEKTNKP
LLDEERAGMRASLELGSGSGAAPGSAARFAELDRSHRLYRKHRN*
back to top

mRNA from alignment at S-firma_F_contig10086:117..2587-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10086.161.1 ID=mRNA_S-firma_F_contig10086.161.1|Name=mRNA_S-firma_F_contig10086.161.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2471bp|location=Sequence derived from alignment at S-firma_F_contig10086:117..2587- (Sphaerotrichia firma ET2_F female)
AGCGTTCAACTTAGTGCCGCTTGGTGCGTGTGGTTGTGTGTGTTTGGGCC
CGCTGACCCCACGGGCGCCTTGTGCACCCATCTTTAATGGGGTAGCCGTG
CCCCACGTCCACACCCCGCCTGTGTGTGCACCAAACCAGTGACACTGTTC
CGCGGCTCCCATGGCCTCCCCCGGCTGCATGGGACCCCTTTGGGGCATTT
TCATGGGGTGTGCAGTGGAATTAAGCCCCATGCACACCCCTGCCGCCGTC
CAGGAGTCGCGGACCACAACTTGTGTTCACCCTTCCCATGTTGTGTTTGG
GGGTGTGGCTGTGGTGGGGTGTCATTCACACCTCTGTCATCCACGTCCTG
GTGTTTGTTTCGCCGAATGGACCCCTGGTGGCGTCAGGTGTCCGCGGCTG
TGTGTTTGTGTGTGGGGCCCCCTTGCCCACCCTTTGCTCCCTCCCCGTGC
TGTGCGTCCTTTGTGTGTGGTGCTGTGGCTTGCCCCACCCACACACCCCT
ACCTGTGGGTGTGTCTTTGAACAATTGGTTTCTCTGTTTCCAGCTTCTGT
TGTGTGCATGTTTTTTGCCGCACTCACGCACCCGGACACACACTGACTCA
CTCAACGCTGTTGAATGCACCAACCTTACCCTCGGAAGCTTGCCCCACTG
TTTGCAGGCGTGATTTTGTGCGCCTCTTCTTTCGTTGTGTGGGGTTGGGT
GCATCTCTCCTGCAAGCATGCAAGCCACGTGTCTAGTTGTTTTGAGGGTC
TGTGCACCGTACTCCTGACACACCGTGAGGTGTTTTGCTGCTGTGTGCAT
CCTTCCCCACGCATTTGGAGGCCTTACGTTACGCGTGCAATCTTTTCTCC
TCGCCTAAAGCAAAACTACACACATCCAGGAAGGAGGTTTCCTTTCGCTG
CCACCTCTTCTCACCCCATTTGATGCCCAGGTTTAATGCGGCTGTTTGTG
GCCATCGCGGCCCTTGTGGCCGTCGTTGGCGCCCAAACGCTGGTGCCACA
GCGGATGGACACGTTTTCAGCCCCAGCAAGGTTCCCGTCCATTGCTGAGG
GGTCAGGTGTGTGTGTTTGTCGAGCTGTACCTTGTGCCTTCCGCATGTTT
CCTCACCGGCCACACACCCCAGGCTCCGGTTCTGCTGCAATCGGCTCCGC
TTCAGGCTCTGGCTCCGCGTTGGGCTCTGGCTCCGCGTCGGGCTCGGGCG
GCTCCGGCTCCGGCTCTGATGTCGGGTCGGGTTCCTCCCCGTCCGTGGGC
TCCCCCATCCCGCCCTTCAAGGGCAACAAGGACGTCGTGGACAACTACGT
CACGGCCCTCCAGCGTGACCTCAACCAAGACCTGGCTGACCTCCACGAGA
AGAGCCTGCAAATTGTGCGGGACGCTACCGCTGCCCTGGAGCGTGTCACT
GCCGAGAAGGCGGAGGGCGGCTCTGGCTCCGGTTCCCTTGCCGGCTCCGC
GTCTGGGTCTGGCTCCGCGTCCGGGTCTGCCTCTGGCTCCACGTCTGGGT
CTGGGTCTGGCTCCACGTCTGGGTCTGGGTCTGCCTCTGGCTCCGCTTCT
GGCTCCCCATCTTTCATCCAGTTGGCGTCCACACACCTCCGCGGCAGCGG
CAGTGGGAGTGGCAGCGCCAGCGCCAGCGCCTCTGGTTCCGCCTCTGGCT
CTGGGTCGGCGTCGGGCAGCGCCTCTGGCTCCGGCTCCGCGTCTGGCTCC
GGCAGCGACTCCCCTGGCCCCGGCATGTTGAACATGAAGCCCATGCCTGG
CATGCCAGGCTCCGGCATCAACGTCGCCAGCCCGGCGTCCCTCCCCGATA
CGCTGGCGTTGGGGACAACATACGCCAGCGACCACTCGTTCAACAACGTG
CGTGATGCACGCCCTCATAATCCCTTGCCGCAAGCCTCACCTCCCACCCC
GCCCCACAGGACGTCAACGCGTTGTTGGGTGAGGTGGACAAGAGCAGCGG
TGAAGCCCGTGACATCAGGACGCGGCTTGTTGAAAAGGAGAACTTTATGG
CTGTGCGTTGTGGTGTCCCGTGTTTTGAGACGAGAGTGAGCCCCTCACCC
CGTGGCGTGTTTTTAACGCGCAGGCCCTCAACACGCGCAAGGGCATCATT
GACTCGGACATCACCGCGGACAAGGACACCCTGAACTCCGTCATGGCGCA
CATCAAGGCGTTGAGCGCCCGGGTGGAGCGCCTCAAGAACGCTGCCGTGC
AGCGCACGCTGGCTGCCCAGGAGCACCAGTACAGCCAGGCGGCGCAGAGC
CTGACGGGGGAGGCGGAGAACCTCAAGGCGGTGCAGAAGGCCCTCAAGGA
CAAGATCAAGACGCTGGAGAAGACCAACAAGCCCCTGCTGGACGAGGAGC
GCGCCGGCATGCGTGCGTCGTTGGAACTTGGCTCCGGCTCTGGGGCGGCA
CCCGGGTCCGCCGCGCGGTTTGCCGAGCTGGACCGCTCCCACCGCTTGTA
CCGCAAGCACCGCAACTGAGG
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig10086:117..2587-

>mRNA_S-firma_F_contig10086.161.1 ID=mRNA_S-firma_F_contig10086.161.1|Name=mRNA_S-firma_F_contig10086.161.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2670bp|location=Sequence derived from alignment at S-firma_F_contig10086:117..2587- (Sphaerotrichia firma ET2_F female)
ATGCGGCTGTTTGTGGCCATCGCGGCCCTTGTGGCCGTCGTTGGCGCCCA
AACGCTGGTGCCACAGCGGATGGACACGTTTTCAGCCCCAGCAAGGTTCC
CGTCCATTGCTGAGGGGTCAGATGCGGCTGTTTGTGGCCATCGCGGCCCT
TGTGGCCGTCGTTGGCGCCCAAACGCTGGTGCCACAGCGGATGGACACGT
TTTCAGCCCCAGCAAGGTTCCCGTCCATTGCTGAGGGGTCAGGCTCCGGT
TCTGCTGCAATCGGCTCCGCTTCAGGCTCTGGCTCCGCGTTGGGCTCTGG
CTCCGCGTCGGGCTCGGGCGGCTCCGGCTCCGGCTCTGATGTCGGGTCGG
GTTCCTCCCCGTCCGTGGGCTCCCCCATCCCGCCCTTCAAGGGCAACAAG
GACGTCGTGGACAACTACGTCACGGCCCTCCAGCGTGACCTCAACCAAGA
CCTGGCTGACCTCCACGAGAAGAGCCTGCAAATTGTGCGGGACGCTACCG
CTGCCCTGGAGCGTGTCACTGCCGAGAAGGCGGAGGGCGGCTCTGGCTCC
GGTTCCCTTGCCGGCTCCGCGTCTGGGTCTGGCTCCGCGTCCGGGTCTGC
CTCTGGCTCCACGTCTGGGTCTGGGTCTGGCTCCACGTCTGGGTCTGGGT
CTGCCTCTGGCTCCGCTTCTGGCTCCCCATCTTTCATCCAGTTGGCGTCC
ACACACCTCCGCGGCAGCGGCAGTGGGAGTGGCAGCGCCAGCGCCAGCGC
CTCTGGTTCCGCCTCTGGCTCTGGGTCGGCGTCGGGCAGCGCCTCTGGCT
CCGGCTCCGCGTCTGGCTCCGGCAGCGACTCCCCTGGCCCCGGCATGTTG
AACATGAAGCCCATGCCTGGCATGCCAGGCTCCGGCATCAACGTCGCCAG
CCCGGCGTCCCTCCCCGATACGCTGGCGTTGGGGACAACATACGCCAGCG
ACCACTCGTTCAACAACGCTCCGGTTCTGCTGCAATCGGCTCCGCTTCAG
GCTCTGGCTCCGCGTTGGGCTCTGGCTCCGCGTCGGGCTCGGGCGGCTCC
GGCTCCGGCTCTGATGTCGGGTCGGGTTCCTCCCCGTCCGTGGGCTCCCC
CATCCCGCCCTTCAAGGGCAACAAGGACGTCGTGGACAACTACGTCACGG
CCCTCCAGCGTGACCTCAACCAAGACCTGGCTGACCTCCACGAGAAGAGC
CTGCAAATTGTGCGGGACGCTACCGCTGCCCTGGAGCGTGTCACTGCCGA
GAAGGCGGAGGGCGGCTCTGGCTCCGGTTCCCTTGCCGGCTCCGCGTCTG
GGTCTGGCTCCGCGTCCGGGTCTGCCTCTGGCTCCACGTCTGGGTCTGGG
TCTGGCTCCACGTCTGGGTCTGGGTCTGCCTCTGGCTCCGCTTCTGGCTC
CCCATCTTTCATCCAGTTGGCGTCCACACACCTCCGCGGCAGCGGCAGTG
GGAGTGGCAGCGCCAGCGCCAGCGCCTCTGGTTCCGCCTCTGGCTCTGGG
TCGGCGTCGGGCAGCGCCTCTGGCTCCGGCTCCGCGTCTGGCTCCGGCAG
CGACTCCCCTGGCCCCGGCATGTTGAACATGAAGCCCATGCCTGGCATGC
CAGGCTCCGGCATCAACGTCGCCAGCCCGGCGTCCCTCCCCGATACGCTG
GCGTTGGGGACAACATACGCCAGCGACCACTCGTTCAACAACGACGTCAA
CGCGTTGTTGGGTGAGGTGGACAAGAGCAGCGGTGAAGCCCGTGACATCA
GGACGCGGCTTGTTGAAAAGGAGAACTTTATGGCTGACGTCAACGCGTTG
TTGGGTGAGGTGGACAAGAGCAGCGGTGAAGCCCGTGACATCAGGACGCG
GCTTGTTGAAAAGGAGAACTTTATGGCTGCCCTCAACACGCGCAAGGGCA
TCATTGACTCGGACATCACCGCGGACAAGGACACCCTGAACTCCGTCATG
GCGCACATCAAGGCGTTGAGCGCCCGGGTGGAGCGCCTCAAGAACGCTGC
CGTGCAGCGCACGCTGGCTGCCCAGGAGCACCAGTACAGCCAGGCGGCGC
AGAGCCTGACGGGGGAGGCGGAGAACCTCAAGGCGGTGCAGAAGGCCCTC
AAGGACAAGATCAAGACGCTGGAGAAGACCAACAAGCCCCTGCTGGACGA
GGAGCGCGCCGGCATGCGTGCGTCGTTGGAACTTGGCTCCGGCTCTGGGG
CGGCACCCGGGTCCGCCGCGCGGTTTGCCGAGCTGGACCGCTCCCACCGC
TTGTACCGCAAGCACCGCAACTGAGCCCTCAACACGCGCAAGGGCATCAT
TGACTCGGACATCACCGCGGACAAGGACACCCTGAACTCCGTCATGGCGC
ACATCAAGGCGTTGAGCGCCCGGGTGGAGCGCCTCAAGAACGCTGCCGTG
CAGCGCACGCTGGCTGCCCAGGAGCACCAGTACAGCCAGGCGGCGCAGAG
CCTGACGGGGGAGGCGGAGAACCTCAAGGCGGTGCAGAAGGCCCTCAAGG
ACAAGATCAAGACGCTGGAGAAGACCAACAAGCCCCTGCTGGACGAGGAG
CGCGCCGGCATGCGTGCGTCGTTGGAACTTGGCTCCGGCTCTGGGGCGGC
ACCCGGGTCCGCCGCGCGGTTTGCCGAGCTGGACCGCTCCCACCGCTTGT
ACCGCAAGCACCGCAACTGA
back to top